Wall clock time and date at job start Tue Mar 31 2020 21:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47663 * 2 1 4 4 H 1.08999 * 109.49780 * 55.06373 * 3 2 1 5 5 C 1.53202 * 109.49690 * 295.00313 * 3 2 1 6 6 N 1.46923 * 108.77132 * 185.41235 * 5 3 2 7 7 C 1.34780 * 120.62572 * 233.62693 * 6 5 3 8 8 O 1.21554 * 120.00382 * 356.15589 * 7 6 5 9 9 C 1.47856 * 119.99796 * 176.16094 * 7 6 5 10 10 C 1.39537 * 120.12507 * 50.76570 * 9 7 6 11 11 C 1.38205 * 119.88133 * 179.76927 * 10 9 7 12 12 F 1.35099 * 119.94609 * 180.25849 * 11 10 9 13 13 C 1.38533 * 120.11720 * 0.51325 * 11 10 9 14 14 C 1.38525 * 120.24653 * 359.73970 * 13 11 10 15 15 F 1.35100 * 119.94146 * 180.02562 * 14 13 11 16 16 C 1.38208 * 120.11917 * 0.02562 * 14 13 11 17 17 C 1.46915 * 118.74292 * 53.60858 * 6 5 3 18 18 C 1.53194 * 108.89369 * 306.31709 * 17 6 5 19 19 C 1.53038 * 109.50315 * 175.16285 * 3 2 1 20 20 H 1.08999 * 109.45830 * 61.29563 * 19 3 2 21 21 N 1.46500 * 109.45912 * 301.34137 * 19 3 2 22 22 C 1.36933 * 120.00335 * 155.00007 * 21 19 3 23 23 H 1.07999 * 119.99909 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00100 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00335 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99965 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46694 * 90.00017 * 26 24 22 28 28 H 1.48498 * 109.46923 * 209.99792 * 26 24 22 29 29 H 1.48492 * 109.47063 * 330.00084 * 26 24 22 30 30 H 1.09003 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47097 * 300.00157 * 1 2 3 32 32 H 1.09005 * 109.47274 * 60.00031 * 1 2 3 33 33 H 1.09009 * 109.46840 * 240.00042 * 2 1 3 34 34 H 1.09003 * 109.47071 * 120.00713 * 2 1 3 35 35 H 1.08993 * 109.58460 * 65.62363 * 5 3 2 36 36 H 1.09000 * 109.57856 * 305.19671 * 5 3 2 37 37 H 1.08005 * 120.06089 * 0.02562 * 10 9 7 38 38 H 1.07998 * 119.87707 * 179.76743 * 13 11 10 39 39 H 1.08003 * 120.06398 * 180.02562 * 16 14 13 40 40 H 1.09002 * 109.58858 * 66.17896 * 17 6 5 41 41 H 1.09003 * 109.59034 * 186.45702 * 17 6 5 42 42 H 1.09000 * 109.49852 * 174.65883 * 18 17 6 43 43 H 1.09005 * 109.49489 * 294.75229 * 18 17 6 44 44 H 0.97003 * 119.99914 * 334.99438 * 21 19 3 45 45 H 0.96996 * 119.99773 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2417 3.4655 -1.3493 7 6 1.4817 4.5579 -1.5628 8 8 0.2944 4.4368 -1.7935 9 6 2.0921 5.9038 -1.5165 10 6 3.2433 6.1764 -2.2564 11 6 3.8071 7.4375 -2.2132 12 9 4.9186 7.7044 -2.9331 13 6 3.2373 8.4271 -1.4287 14 6 2.0975 8.1605 -0.6880 15 9 1.5467 9.1303 0.0745 16 6 1.5227 6.9043 -0.7276 17 6 3.6922 3.5897 -1.1522 18 6 4.0769 2.8901 0.1552 19 6 3.5656 1.4448 0.1216 20 1 3.9989 0.9266 -0.7338 21 7 3.9578 0.7606 1.3562 22 6 5.1962 0.1847 1.4562 23 1 5.8836 0.2346 0.6247 24 6 5.5680 -0.4631 2.6261 25 7 4.7304 -0.5235 3.6397 26 14 7.2571 -1.2493 2.7622 27 1 8.2231 -0.2570 3.2983 28 1 7.1874 -2.4167 3.6774 29 1 7.7033 -1.6990 1.4192 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 0.5498 2.2174 -1.3538 36 1 1.9908 1.5396 -2.1546 37 1 3.6907 5.4045 -2.8651 38 1 3.6832 9.4101 -1.3949 39 1 0.6338 6.6975 -0.1501 40 1 4.2157 3.1207 -1.9854 41 1 3.9646 4.6437 -1.0965 42 1 5.1615 2.8934 0.2642 43 1 3.6247 3.4162 0.9960 44 1 3.3403 0.7155 2.1029 45 1 4.9904 -0.9759 4.4574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037974367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:29 Heat of formation + Delta-G solvation = -89.395669 kcal Electronic energy + Delta-G solvation = -29686.402347 eV Core-core repulsion = 25339.954470 eV Total energy + Delta-G solvation = -4346.447877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.38813 -49.36510 -40.75963 -38.76978 -37.67385 -34.90941 -33.85789 -31.88000 -31.64616 -30.84774 -29.58220 -28.68889 -25.78698 -24.13545 -23.98275 -23.15649 -22.64771 -20.92588 -20.36375 -19.49670 -18.20881 -17.62866 -17.16731 -16.99952 -16.67048 -16.33158 -16.05134 -15.94961 -15.67199 -15.07002 -14.94070 -14.68519 -14.27292 -14.04098 -13.78845 -13.41318 -13.32065 -13.27503 -12.96802 -12.79653 -12.45533 -12.39548 -12.30436 -12.13042 -11.78353 -11.65523 -11.35656 -10.97926 -10.90101 -10.76611 -10.44740 -10.26513 -10.19860 -10.08266 -9.78645 -9.66743 -9.46751 -9.18497 -8.93127 -8.63649 -7.01377 -5.82038 -3.11060 0.27771 0.51524 2.34268 2.70776 3.04375 3.39229 3.43556 3.44907 3.46496 3.95391 4.03878 4.32293 4.45129 4.53323 4.54988 4.90477 5.00320 5.14141 5.19235 5.26558 5.31968 5.38055 5.45780 5.49003 5.51086 5.55488 5.59093 5.61981 5.65476 5.81147 5.93449 6.04833 6.08503 6.23637 6.25094 6.28686 6.31832 6.39684 6.46879 6.60163 6.75768 6.89434 6.98398 7.28152 7.64330 7.94323 8.35990 9.47718 10.04402 10.39163 11.40275 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.003197 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.523097 B = 8755.177817 C =10006.011702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.559 3.441 8 O -0.532 6.532 9 C -0.059 4.059 10 C -0.136 4.136 11 C 0.129 3.871 12 F -0.126 7.126 13 C -0.176 4.176 14 C 0.131 3.869 15 F -0.126 7.126 16 C -0.116 4.116 17 C 0.093 3.907 18 C -0.152 4.152 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 14.614 -12.268 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.346 3.654 8 O -0.410 6.410 9 C -0.062 4.062 10 C -0.156 4.156 11 C 0.110 3.890 12 F -0.104 7.104 13 C -0.196 4.196 14 C 0.111 3.889 15 F -0.105 7.105 16 C -0.136 4.136 17 C -0.030 4.030 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.662 14.464 -12.396 19.873 hybrid contribution 1.083 -0.107 0.522 1.207 sum -4.578 14.357 -11.874 19.185 Atomic orbital electron populations 1.21851 0.96763 1.01132 1.01306 1.21450 0.94397 0.95536 1.03585 1.21791 0.97732 0.96387 0.96563 0.91094 1.21851 0.99497 0.80767 0.98205 1.48105 1.08735 1.06574 1.69035 1.18035 0.86141 0.83684 0.77542 1.90810 1.14881 1.86298 1.49027 1.19527 0.94648 0.94634 0.97425 1.21388 0.95927 0.96397 1.01858 1.17047 0.85164 0.93216 0.93593 1.91568 1.49205 1.94310 1.75365 1.21179 0.97332 1.01451 0.99612 1.17057 0.93100 0.85847 0.92878 1.91565 1.84540 1.61330 1.73021 1.21181 1.01398 0.90694 1.00302 1.22237 0.79022 1.01902 0.99793 1.22755 1.02348 0.99287 0.94899 1.20250 0.90676 0.90462 0.91354 0.93331 1.42402 1.16501 1.64383 1.12695 1.19203 0.91800 1.27469 0.98641 0.91227 1.24720 0.98098 1.01453 0.96412 1.69656 1.35239 1.48331 1.04693 0.86238 0.84140 0.78773 0.77311 1.21773 1.21818 1.20776 0.93105 0.92963 0.93211 0.92379 0.89695 0.88899 0.91185 0.83033 0.82929 0.83094 0.90939 0.89842 0.90365 0.92093 0.78177 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.71 5.31 -26.74 -0.14 -1.85 16 3 C -0.10 -1.60 1.93 -90.50 -0.17 -1.78 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.59 5.31 -3.71 -0.02 1.57 16 6 N -0.59 -7.67 2.97 -173.88 -0.52 -8.18 16 7 C 0.56 7.54 7.23 -12.32 -0.09 7.45 16 8 O -0.53 -8.71 16.48 5.32 0.09 -8.62 16 9 C -0.06 -0.65 5.00 -104.99 -0.53 -1.18 16 10 C -0.14 -1.28 7.34 -39.11 -0.29 -1.57 16 11 C 0.13 1.17 7.29 -39.48 -0.29 0.88 16 12 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 13 C -0.18 -1.49 10.00 -39.37 -0.39 -1.88 16 14 C 0.13 1.25 7.29 -39.49 -0.29 0.96 16 15 F -0.13 -1.26 17.26 2.25 0.04 -1.22 16 16 C -0.12 -1.22 9.72 -39.10 -0.38 -1.60 16 17 C 0.09 1.11 5.37 -3.72 -0.02 1.09 16 18 C -0.15 -2.37 5.69 -26.45 -0.15 -2.52 16 19 C 0.18 3.24 2.20 -67.73 -0.15 3.09 16 20 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 21 N -0.72 -16.52 4.33 -53.24 -0.23 -16.75 16 22 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 26 Si 0.90 21.58 29.55 -169.99 -5.02 16.56 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.08 1.57 7.22 -51.93 -0.37 1.20 16 35 H 0.09 1.29 5.74 -51.93 -0.30 0.99 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.15 1.22 7.07 -52.48 -0.37 0.85 16 38 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.87 4.54 -51.93 -0.24 0.64 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.38 9.59 7.51 -40.82 -0.31 9.29 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -29.47 371.27 -8.21 -37.68 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.13 Total: 8.15 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.79 Total: -5.73 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.02 Total: -51.26 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.47 -8.21 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.720 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds