Wall clock time and date at job start Tue Mar 31 2020 21:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47194 * 2 1 4 4 H 1.08996 * 109.47091 * 304.99774 * 3 2 1 5 5 F 1.39895 * 109.47027 * 64.99964 * 3 2 1 6 6 C 1.50700 * 109.46990 * 184.99958 * 3 2 1 7 7 O 1.21290 * 120.00001 * 314.99704 * 6 3 2 8 8 N 1.34770 * 120.00013 * 135.00293 * 6 3 2 9 9 C 1.48152 * 127.83867 * 179.97438 * 8 6 3 10 10 C 1.54393 * 104.61580 * 219.60250 * 9 8 6 11 11 H 1.09003 * 110.43036 * 95.04684 * 10 9 8 12 12 C 1.50697 * 110.34079 * 217.26101 * 10 9 8 13 13 C 1.38216 * 120.01502 * 55.51707 * 12 10 9 14 14 C 1.38226 * 120.02514 * 180.02562 * 13 12 10 15 15 C 1.38265 * 120.05353 * 0.02562 * 14 13 12 16 16 C 1.38177 * 120.02212 * 359.70277 * 15 14 13 17 17 C 1.38436 * 120.00925 * 235.53462 * 12 10 9 18 18 F 1.35104 * 120.02854 * 359.95937 * 17 12 10 19 19 C 1.54286 * 104.95922 * 336.13038 * 10 9 8 20 20 H 1.08996 * 110.34225 * 241.12456 * 19 10 9 21 21 N 1.46501 * 110.33967 * 118.87047 * 19 10 9 22 22 C 1.36944 * 119.99745 * 154.99933 * 21 19 10 23 23 H 1.08000 * 120.00001 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99825 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00210 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99744 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47301 * 89.99513 * 26 24 22 28 28 H 1.48495 * 109.46833 * 209.99761 * 26 24 22 29 29 H 1.48502 * 109.47231 * 329.99617 * 26 24 22 30 30 C 1.48141 * 127.83968 * 359.96943 * 8 6 3 31 31 H 1.08992 * 109.47311 * 300.00326 * 1 2 3 32 32 H 1.09009 * 109.46863 * 60.00001 * 1 2 3 33 33 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47485 * 240.00046 * 2 1 3 35 35 H 1.09000 * 109.47229 * 119.99545 * 2 1 3 36 36 H 1.08997 * 110.40720 * 100.81454 * 9 8 6 37 37 H 1.09000 * 110.40695 * 338.38433 * 9 8 6 38 38 H 1.08001 * 119.98647 * 359.97438 * 13 12 10 39 39 H 1.08001 * 119.97063 * 179.97438 * 14 13 12 40 40 H 1.07994 * 119.98907 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.01627 * 180.27269 * 16 15 14 42 42 H 0.96999 * 120.00790 * 335.00020 * 21 19 10 43 43 H 0.96998 * 119.99740 * 180.02562 * 25 24 22 44 44 H 1.09005 * 110.40643 * 21.61230 * 30 8 6 45 45 H 1.09004 * 110.41219 * 259.18424 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1238 7 8 4.2064 0.6810 0.5447 8 7 4.1467 2.2941 -0.9773 9 6 5.5979 2.4431 -1.2357 10 6 5.8136 3.9650 -1.3805 11 1 6.1253 4.3973 -0.4296 12 6 6.8405 4.2495 -2.4460 13 6 6.6672 3.7519 -3.7238 14 6 7.6093 4.0123 -4.7012 15 6 8.7262 4.7703 -4.4019 16 6 8.8988 5.2736 -3.1266 17 6 7.9580 5.0092 -2.1453 18 9 8.1283 5.4966 -0.8968 19 6 4.4377 4.5242 -1.7986 20 1 4.5048 5.0048 -2.7746 21 7 3.9473 5.4725 -0.7954 22 6 3.0557 6.4482 -1.1537 23 1 2.7138 6.5183 -2.1758 24 6 2.5913 7.3471 -0.2033 25 7 3.0076 7.2613 1.0424 26 14 1.3746 8.6776 -0.6920 27 1 -0.0101 8.1676 -0.5248 28 1 1.5709 9.8693 0.1719 29 1 1.5957 9.0534 -2.1115 30 6 3.5113 3.2909 -1.8701 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.8745 1.9306 -2.1571 37 1 6.1752 2.0556 -0.3963 38 1 5.7958 3.1586 -3.9584 39 1 7.4732 3.6226 -5.6992 40 1 9.4618 4.9728 -5.1662 41 1 9.7690 5.8694 -2.8941 42 1 4.2540 5.4094 0.1227 43 1 2.6828 7.8893 1.7066 44 1 2.5140 3.5432 -1.5093 45 1 3.4623 2.9108 -2.8905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079306103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:47 Heat of formation + Delta-G solvation = -88.859114 kcal Electronic energy + Delta-G solvation = -30142.261753 eV Core-core repulsion = 25795.837143 eV Total energy + Delta-G solvation = -4346.424611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.68141 -47.59034 -40.10951 -38.89766 -37.32627 -34.00598 -33.97365 -32.78416 -30.96890 -30.48487 -29.06803 -27.58358 -27.16990 -24.43700 -23.63226 -22.69415 -21.86084 -21.46666 -19.80768 -19.26048 -17.83013 -17.45418 -17.05474 -16.53419 -16.25016 -16.02963 -15.68319 -15.39173 -15.15741 -14.98765 -14.51204 -14.14748 -13.94361 -13.79000 -13.56522 -13.39837 -13.14450 -12.99247 -12.84260 -12.77072 -12.40546 -12.27739 -11.99058 -11.86509 -11.79332 -11.58342 -11.35888 -11.14233 -10.97083 -10.85837 -10.81784 -10.64706 -10.57155 -10.15450 -9.81095 -9.56183 -9.17452 -8.89818 -8.64622 -8.45391 -7.07005 -5.84161 -3.15948 1.19112 1.21514 2.59508 2.97705 3.38761 3.43507 3.46230 3.58774 4.35166 4.38213 4.48866 4.51027 4.66336 4.74381 4.78406 4.88806 4.91321 5.01879 5.08355 5.21469 5.31947 5.35586 5.43607 5.45094 5.45634 5.55822 5.63048 5.67859 5.80621 5.85081 5.88311 6.00030 6.05652 6.06440 6.10444 6.14580 6.20748 6.22303 6.34106 6.36989 6.48875 6.70655 6.92881 7.60642 7.65902 8.17904 8.31651 9.43678 9.97000 10.31288 11.37304 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007204 B = 0.005166 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3885.614166 B = 5418.616960 C = 8231.794345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.087 3.913 4 H 0.100 0.900 5 F -0.184 7.184 6 C 0.516 3.484 7 O -0.536 6.536 8 N -0.605 5.605 9 C 0.117 3.883 10 C -0.080 4.080 11 H 0.100 0.900 12 C -0.091 4.091 13 C -0.089 4.089 14 C -0.131 4.131 15 C -0.100 4.100 16 C -0.155 4.155 17 C 0.108 3.892 18 F -0.133 7.133 19 C 0.181 3.819 20 H 0.074 0.926 21 N -0.711 5.711 22 C -0.253 4.253 23 H 0.073 0.927 24 C -0.004 4.004 25 N -0.924 5.924 26 Si 0.906 3.094 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.064 3.936 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.091 0.909 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -11.644 -11.821 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.048 3.952 4 H 0.118 0.882 5 F -0.165 7.165 6 C 0.303 3.697 7 O -0.413 6.413 8 N -0.338 5.338 9 C -0.006 4.006 10 C -0.100 4.100 11 H 0.118 0.882 12 C -0.093 4.093 13 C -0.107 4.107 14 C -0.149 4.149 15 C -0.118 4.118 16 C -0.173 4.173 17 C 0.089 3.911 18 F -0.111 7.111 19 C 0.068 3.932 20 H 0.092 0.908 21 N -0.351 5.351 22 C -0.384 4.384 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.570 5.570 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.062 4.062 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.325 -11.922 -11.349 17.299 hybrid contribution -0.537 1.099 0.380 1.281 sum 4.788 -10.823 -10.969 16.136 Atomic orbital electron populations 1.21771 0.94221 1.02261 1.02785 1.21982 0.97220 0.93868 1.04603 1.21556 0.91767 0.95655 0.86249 0.88223 1.92918 1.91851 1.83899 1.47786 1.20561 0.90182 0.79892 0.79071 1.90690 1.66284 1.40224 1.44135 1.48946 1.08228 1.36490 1.40145 1.22374 0.81746 0.94838 1.01611 1.21471 0.95101 0.95285 0.98127 0.88209 1.19765 0.94637 0.98891 0.95966 1.20904 0.99234 0.99057 0.91488 1.21133 0.94592 0.99687 0.99466 1.20938 0.97941 0.97326 0.95627 1.21120 0.99889 1.03018 0.93317 1.17601 0.95709 0.97447 0.80352 1.91526 1.95226 1.85820 1.38563 1.21163 0.88143 0.89083 0.94847 0.90829 1.42487 1.52082 1.32798 1.07720 1.19188 1.17990 1.06481 0.94734 0.90947 1.24778 1.00401 0.99482 0.95511 1.69670 1.46915 1.39000 1.01412 0.86217 0.81092 0.81526 0.77459 1.21555 1.21711 1.20666 1.23797 1.00437 0.89795 0.92182 0.91780 0.92277 0.91947 0.90119 0.89652 0.90769 0.89987 0.85060 0.85565 0.85415 0.84995 0.77858 0.93259 0.89083 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.83 37.16 0.37 -1.20 16 2 C -0.14 -1.68 5.41 -26.73 -0.14 -1.83 16 3 C 0.09 1.33 3.49 -27.88 -0.10 1.23 16 4 H 0.10 1.35 6.35 -51.93 -0.33 1.02 16 5 F -0.18 -3.46 16.75 2.25 0.04 -3.42 16 6 C 0.52 9.03 7.26 -10.99 -0.08 8.95 16 7 O -0.54 -10.79 16.87 5.55 0.09 -10.69 16 8 N -0.61 -9.76 3.32 -169.28 -0.56 -10.32 16 9 C 0.12 1.73 6.49 -2.40 -0.02 1.72 16 10 C -0.08 -1.29 3.02 -90.37 -0.27 -1.56 16 11 H 0.10 1.90 6.72 -51.93 -0.35 1.55 16 12 C -0.09 -1.29 4.75 -104.56 -0.50 -1.79 16 13 C -0.09 -1.01 8.17 -39.59 -0.32 -1.33 16 14 C -0.13 -1.27 10.04 -39.58 -0.40 -1.67 16 15 C -0.10 -0.99 10.04 -39.59 -0.40 -1.39 16 16 C -0.15 -1.84 10.03 -39.51 -0.40 -2.24 16 17 C 0.11 1.60 7.25 -39.42 -0.29 1.32 16 18 F -0.13 -2.28 16.23 2.25 0.04 -2.25 16 19 C 0.18 3.24 3.16 -66.51 -0.21 3.03 16 20 H 0.07 1.30 7.32 -51.93 -0.38 0.92 16 21 N -0.71 -16.88 5.11 -52.05 -0.27 -17.15 16 22 C -0.25 -6.63 9.96 -15.05 -0.15 -6.78 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 25 N -0.92 -27.58 13.06 55.49 0.72 -26.85 16 26 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.06 0.98 6.41 -2.40 -0.02 0.97 16 31 H 0.06 0.72 7.93 -51.93 -0.41 0.30 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.07 0.91 6.78 -51.93 -0.35 0.56 16 37 H 0.08 1.30 7.88 -51.93 -0.41 0.89 16 38 H 0.13 1.26 7.64 -52.49 -0.40 0.86 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.39 10.27 7.56 -40.82 -0.31 9.96 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.09 1.56 6.63 -51.93 -0.34 1.22 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -32.49 378.75 -8.47 -40.97 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.21 Total: 10.04 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.01 Total: -2.78 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.10 Total: -54.33 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.07 Total: -5.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.49 -8.47 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079306103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.893 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds