Wall clock time and date at job start Tue Mar 31 2020 21:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47452 * 2 1 4 4 H 1.08996 * 109.99663 * 305.83976 * 3 2 1 5 5 C 1.54319 * 109.88449 * 184.74328 * 3 2 1 6 6 H 1.09005 * 110.72121 * 336.93312 * 5 3 2 7 7 N 1.46501 * 110.72044 * 100.02518 * 5 3 2 8 8 C 1.34780 * 120.00081 * 204.99965 * 7 5 3 9 9 O 1.21582 * 119.99955 * 359.72516 * 8 7 5 10 10 C 1.47543 * 119.99847 * 179.72032 * 8 7 5 11 11 C 1.39904 * 120.18600 * 89.72963 * 10 8 7 12 12 F 1.35099 * 120.09505 * 359.97438 * 11 10 8 13 13 C 1.38220 * 119.80844 * 179.69611 * 11 10 8 14 14 C 1.38305 * 120.18373 * 0.60319 * 13 11 10 15 15 C 1.50706 * 119.80273 * 179.69531 * 14 13 11 16 16 C 1.38298 * 120.39003 * 359.66890 * 14 13 11 17 17 C 1.38218 * 120.18891 * 0.02804 * 16 14 13 18 18 F 1.35101 * 120.10152 * 179.97438 * 17 16 14 19 19 C 1.55157 * 102.94519 * 218.38885 * 5 3 2 20 20 C 1.54905 * 101.57846 * 35.50171 * 19 5 3 21 21 N 1.47020 * 109.88379 * 66.93505 * 3 2 1 22 22 C 1.36937 * 125.64847 * 298.32799 * 21 3 2 23 23 H 1.08004 * 120.00194 * 336.99252 * 22 21 3 24 24 C 1.38813 * 120.00096 * 156.99511 * 22 21 3 25 25 N 1.31617 * 119.99669 * 158.23555 * 24 22 21 26 26 Si 1.86796 * 120.00161 * 338.23152 * 24 22 21 27 27 H 1.48503 * 109.46894 * 92.06424 * 26 24 22 28 28 H 1.48497 * 109.47377 * 212.06325 * 26 24 22 29 29 H 1.48497 * 109.47221 * 332.06535 * 26 24 22 30 30 H 1.08991 * 109.47045 * 53.20229 * 1 2 3 31 31 H 1.08995 * 109.46829 * 173.20543 * 1 2 3 32 32 H 1.08997 * 109.46696 * 293.20316 * 1 2 3 33 33 H 1.09000 * 109.47010 * 239.99676 * 2 1 3 34 34 H 1.09007 * 109.47112 * 119.99996 * 2 1 3 35 35 H 0.97004 * 120.00118 * 24.72090 * 7 5 3 36 36 H 1.07994 * 119.90939 * 180.31632 * 13 11 10 37 37 H 1.09001 * 109.47155 * 269.97520 * 15 14 13 38 38 H 1.09000 * 109.47082 * 29.98023 * 15 14 13 39 39 H 1.09002 * 109.46542 * 149.97587 * 15 14 13 40 40 H 1.07995 * 119.90840 * 180.02562 * 16 14 13 41 41 H 1.08994 * 111.00507 * 153.57640 * 19 5 3 42 42 H 1.09002 * 111.00056 * 277.43102 * 19 5 3 43 43 H 1.08999 * 110.36685 * 204.15027 * 20 19 5 44 44 H 1.08999 * 110.37014 * 81.82984 * 20 19 5 45 45 H 0.97002 * 119.99802 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5989 1.9938 -0.8303 5 6 3.5785 1.4552 -0.1200 6 1 3.9999 0.5097 0.2217 7 7 3.9886 1.7351 -1.4983 8 6 5.1891 1.3135 -1.9430 9 8 5.9337 0.7053 -1.1989 10 6 5.5995 1.5900 -3.3330 11 6 6.2880 2.7681 -3.6420 12 9 6.5795 3.6578 -2.6680 13 6 6.6743 3.0163 -4.9457 14 6 6.3710 2.1099 -5.9454 15 6 6.7903 2.3925 -7.3651 16 6 5.6857 0.9456 -5.6498 17 6 5.2974 0.6785 -4.3505 18 9 4.6275 -0.4592 -4.0637 19 6 3.9911 2.6169 0.8221 20 6 2.9427 2.4858 1.9549 21 7 1.6961 2.0945 1.2720 22 6 0.4279 2.3042 1.7440 23 1 -0.4054 2.3358 1.0577 24 6 0.2133 2.4762 3.1046 25 7 -0.8737 3.0862 3.5274 26 14 1.4670 1.8418 4.3355 27 1 2.4404 2.9183 4.6500 28 1 0.7719 1.4241 5.5795 29 1 2.1854 0.6788 3.7555 30 1 -0.3633 0.6155 -0.8228 31 1 -0.3633 -1.0204 -0.1216 32 1 -0.3632 0.4049 0.9445 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3945 2.2203 -2.0921 36 1 7.2104 3.9227 -5.1852 37 1 5.9996 2.9430 -7.8748 38 1 7.7038 2.9872 -7.3626 39 1 6.9709 1.4514 -7.8847 40 1 5.4533 0.2430 -6.4364 41 1 5.0008 2.4694 1.2052 42 1 3.9029 3.5791 0.3176 43 1 2.8127 3.4408 2.4639 44 1 3.2447 1.7151 2.6641 45 1 -1.0235 3.2067 4.4782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087651288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:02 Heat of formation + Delta-G solvation = -77.579245 kcal Electronic energy + Delta-G solvation = -29927.034250 eV Core-core repulsion = 25581.098771 eV Total energy + Delta-G solvation = -4345.935479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.38789 -49.36629 -40.20920 -39.13062 -37.92300 -34.28063 -33.27445 -32.53370 -32.03484 -30.87714 -29.54589 -28.18921 -26.99222 -24.43918 -23.38963 -23.02070 -22.16592 -21.25730 -20.46014 -19.63151 -18.18722 -17.83719 -17.66938 -17.04131 -16.56258 -16.14419 -16.06620 -15.65343 -15.51829 -15.06127 -14.77681 -14.48818 -14.36073 -14.07499 -13.80304 -13.62924 -13.59036 -13.11456 -12.84507 -12.48183 -12.47422 -12.35023 -12.29690 -12.18187 -11.99487 -11.84538 -11.41959 -11.09417 -10.92227 -10.68068 -10.44457 -10.30503 -10.19545 -9.99562 -9.78976 -9.31331 -9.30546 -9.24600 -8.90849 -8.61876 -7.03126 -5.96573 -3.28591 0.30900 0.50318 2.37329 2.73373 3.04211 3.34068 3.36853 3.49959 3.52910 3.84848 4.04596 4.36596 4.39536 4.54872 4.56735 4.85179 4.92523 5.03668 5.05527 5.13876 5.19712 5.28895 5.30446 5.32763 5.48181 5.51805 5.59619 5.77046 5.80713 5.88474 5.93314 6.09102 6.15575 6.22477 6.29274 6.38817 6.53274 6.60768 6.61825 6.73242 6.76372 7.01782 7.31552 7.44046 7.74038 8.08419 8.30110 8.81455 9.66897 10.16864 11.18790 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.003033 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.398492 B = 9230.017982 C = 9782.930702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.159 3.841 4 H 0.047 0.953 5 C 0.131 3.869 6 H 0.099 0.901 7 N -0.700 5.700 8 C 0.566 3.434 9 O -0.521 6.521 10 C -0.203 4.203 11 C 0.170 3.830 12 F -0.119 7.119 13 C -0.169 4.169 14 C -0.014 4.014 15 C -0.119 4.119 16 C -0.168 4.168 17 C 0.170 3.830 18 F -0.119 7.119 19 C -0.140 4.140 20 C 0.112 3.888 21 N -0.598 5.598 22 C -0.234 4.234 23 H 0.095 0.905 24 C 0.025 3.975 25 N -0.907 5.907 26 Si 0.877 3.123 27 H -0.287 1.287 28 H -0.302 1.302 29 H -0.270 1.270 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.402 0.598 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.149 0.851 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.845 -1.211 -22.804 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.052 3.948 4 H 0.064 0.936 5 C 0.027 3.973 6 H 0.117 0.883 7 N -0.350 5.350 8 C 0.349 3.651 9 O -0.397 6.397 10 C -0.208 4.208 11 C 0.149 3.851 12 F -0.097 7.097 13 C -0.187 4.187 14 C -0.014 4.014 15 C -0.175 4.175 16 C -0.187 4.187 17 C 0.149 3.851 18 F -0.097 7.097 19 C -0.180 4.180 20 C -0.013 4.013 21 N -0.324 5.324 22 C -0.361 4.361 23 H 0.113 0.887 24 C -0.174 4.174 25 N -0.550 5.550 26 Si 0.707 3.293 27 H -0.214 1.214 28 H -0.230 1.230 29 H -0.196 1.196 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.167 0.833 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.147 -1.590 -22.009 26.765 hybrid contribution 0.294 -0.229 0.874 0.950 sum 15.441 -1.820 -21.135 26.238 Atomic orbital electron populations 1.21937 0.95302 0.99376 1.04413 1.21909 0.97304 0.97201 1.00078 1.21183 0.89744 0.92740 0.91168 0.93582 1.22226 0.96019 0.99455 0.79589 0.88268 1.46013 1.17534 1.56999 1.14427 1.17693 0.82276 0.79459 0.85637 1.90829 1.52301 1.40107 1.56461 1.19984 1.08341 0.97058 0.95424 1.17260 0.96037 0.85968 0.85787 1.91599 1.90740 1.65809 1.61528 1.21028 1.04979 1.02418 0.90317 1.19681 0.93533 0.91875 0.96351 1.20907 1.02360 1.03326 0.90923 1.21023 1.03029 0.99780 0.94908 1.17257 0.93132 0.82496 0.92179 1.91599 1.77025 1.46893 1.94170 1.23136 0.99117 0.98249 0.97457 1.21966 0.86295 0.98931 0.94152 1.44761 1.01865 1.66246 1.19548 1.18563 0.82806 1.43315 0.91412 0.88706 1.25080 0.96170 0.99456 0.96696 1.69826 1.27932 1.42414 1.14812 0.87015 0.81011 0.80133 0.81169 1.21418 1.23026 1.19565 0.94012 0.94905 0.88776 0.93817 0.92379 0.76299 0.83331 0.89853 0.90509 0.90514 0.83329 0.91224 0.90839 0.92064 0.95246 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.05 37.16 0.34 -2.57 16 2 C -0.13 -2.33 5.45 -26.73 -0.15 -2.48 16 3 C 0.16 3.04 2.99 -66.96 -0.20 2.84 16 4 H 0.05 0.86 7.71 -51.93 -0.40 0.46 16 5 C 0.13 2.30 2.84 -66.10 -0.19 2.11 16 6 H 0.10 1.87 7.26 -51.93 -0.38 1.49 16 7 N -0.70 -10.39 5.18 -53.07 -0.27 -10.66 16 8 C 0.57 8.88 6.54 -12.46 -0.08 8.80 16 9 O -0.52 -10.09 16.75 5.29 0.09 -10.00 16 10 C -0.20 -2.52 5.64 -104.86 -0.59 -3.12 16 11 C 0.17 1.84 7.29 -38.96 -0.28 1.55 16 12 F -0.12 -1.48 16.83 2.25 0.04 -1.44 16 13 C -0.17 -1.26 9.65 -39.56 -0.38 -1.64 16 14 C -0.01 -0.09 5.88 -104.57 -0.62 -0.70 16 15 C -0.12 -0.36 10.00 36.01 0.36 0.00 16 16 C -0.17 -1.25 9.65 -39.57 -0.38 -1.63 16 17 C 0.17 1.83 7.29 -38.96 -0.28 1.54 16 18 F -0.12 -1.47 16.83 2.25 0.04 -1.43 16 19 C -0.14 -2.53 6.77 -24.58 -0.17 -2.70 16 20 C 0.11 2.44 4.78 -2.53 -0.01 2.42 16 21 N -0.60 -13.84 2.88 -162.58 -0.47 -14.31 16 22 C -0.23 -6.26 7.98 -15.06 -0.12 -6.38 16 23 H 0.10 2.68 7.13 -52.48 -0.37 2.30 16 24 C 0.02 0.71 5.44 -17.43 -0.09 0.61 16 25 N -0.91 -27.32 13.97 55.49 0.78 -26.54 16 26 Si 0.88 22.41 24.47 -169.99 -4.16 18.25 16 27 H -0.29 -7.21 7.01 56.52 0.40 -6.81 16 28 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 29 H -0.27 -6.81 6.35 56.52 0.36 -6.45 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 2.11 5.37 -51.93 -0.28 1.83 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.04 8.35 -40.82 -0.34 4.70 16 36 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 39 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.40 7.31 -51.93 -0.38 1.02 16 44 H 0.03 0.68 5.27 -51.93 -0.27 0.41 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -32.65 370.58 -7.48 -40.13 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.25 Total: 1.76 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.85 Total: -1.33 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.03 Total: -51.52 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.16 Total: 18.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.65 -7.48 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087651288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.448 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds