Wall clock time and date at job start Tue Mar 31 2020 20:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99941 * 2 1 4 4 H 1.08993 * 109.47338 * 30.00274 * 3 2 1 5 5 C 1.50703 * 109.47305 * 269.99561 * 3 2 1 6 6 O 1.21285 * 120.00077 * 330.16137 * 5 3 2 7 7 N 1.34775 * 120.00196 * 150.15508 * 5 3 2 8 8 C 1.48142 * 127.83953 * 174.90073 * 7 5 3 9 9 C 1.54391 * 104.61740 * 219.60481 * 8 7 5 10 10 H 1.08996 * 110.33869 * 95.00384 * 9 8 7 11 11 C 1.52995 * 110.34519 * 217.26129 * 9 8 7 12 12 F 1.39893 * 109.47547 * 175.53721 * 11 9 8 13 13 F 1.39902 * 109.47172 * 295.54140 * 11 9 8 14 14 F 1.39907 * 109.47039 * 55.54033 * 11 9 8 15 15 C 1.54283 * 104.96222 * 336.13580 * 9 8 7 16 16 H 1.09001 * 110.43187 * 241.08172 * 15 9 8 17 17 N 1.46496 * 110.34424 * 118.86608 * 15 9 8 18 18 C 1.36945 * 119.99942 * 158.00913 * 17 15 9 19 19 H 1.07997 * 119.99844 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99814 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00095 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99760 * 180.27431 * 20 18 17 23 23 H 1.48496 * 109.47004 * 269.72223 * 22 20 18 24 24 H 1.48503 * 109.47126 * 29.72395 * 22 20 18 25 25 H 1.48503 * 109.46968 * 149.72446 * 22 20 18 26 26 C 1.48154 * 127.83361 * 354.92668 * 7 5 3 27 27 C 1.53002 * 109.46958 * 149.99956 * 3 2 1 28 28 C 1.53003 * 109.47011 * 185.19451 * 27 3 2 29 29 C 1.52999 * 109.47311 * 305.19147 * 27 3 2 30 30 H 1.09004 * 109.47191 * 300.00157 * 1 2 3 31 31 H 1.09004 * 109.46942 * 60.00145 * 1 2 3 32 32 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.08991 * 110.40768 * 338.39053 * 8 7 5 34 34 H 1.09002 * 110.40737 * 100.70460 * 8 7 5 35 35 H 0.96998 * 120.00368 * 338.01541 * 17 15 9 36 36 H 0.97000 * 119.99851 * 180.02562 * 21 20 18 37 37 H 1.08995 * 110.40661 * 21.61138 * 26 7 5 38 38 H 1.09003 * 110.50442 * 259.22114 * 26 7 5 39 39 H 1.08999 * 109.47233 * 65.19456 * 27 3 2 40 40 H 1.08994 * 109.47503 * 55.94388 * 28 27 3 41 41 H 1.08998 * 109.47084 * 175.94796 * 28 27 3 42 42 H 1.09005 * 109.47188 * 295.94746 * 28 27 3 43 43 H 1.09002 * 109.46927 * 59.99844 * 29 27 3 44 44 H 1.09002 * 109.47474 * 180.02562 * 29 27 3 45 45 H 1.08999 * 109.47225 * 300.00314 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 2.4249 0.9518 -2.2963 7 7 2.1636 3.0778 -1.7187 8 6 2.4394 3.7254 -3.0223 9 6 3.2079 5.0150 -2.6618 10 1 4.2827 4.8458 -2.7251 11 6 2.7928 6.1585 -3.5896 12 9 3.4220 7.3402 -3.1838 13 9 3.1716 5.8553 -4.9018 14 9 1.4049 6.3256 -3.5317 15 6 2.7991 5.3290 -1.2076 16 1 2.3031 6.2980 -1.1525 17 7 3.9739 5.3087 -0.3326 18 6 3.9490 5.9765 0.8627 19 1 3.0631 6.5177 1.1605 20 6 5.0624 5.9578 1.6915 21 7 6.1419 5.2977 1.3287 22 14 5.0257 6.8623 3.3254 23 1 5.5088 8.2531 3.1322 24 1 3.6349 6.8890 3.8453 25 1 5.9043 6.1637 4.2978 26 6 1.8194 4.2015 -0.8167 27 6 3.3588 1.2632 0.7213 28 6 3.9208 2.6818 0.8354 29 6 3.1704 0.6753 2.1212 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.0555 3.0775 -3.6457 34 1 1.5065 3.9666 -3.5318 35 1 4.7695 4.8224 -0.6000 36 1 6.9197 5.2844 1.9080 37 1 1.9678 3.9128 0.2238 38 1 0.7895 4.5198 -0.9790 39 1 4.0536 0.6415 0.1566 40 1 3.1945 3.3211 1.3370 41 1 4.8457 2.6609 1.4117 42 1 4.1226 3.0739 -0.1615 43 1 2.7700 -0.3353 2.0399 44 1 4.1311 0.6456 2.6352 45 1 2.4757 1.2970 2.6859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099302018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:40 Heat of formation + Delta-G solvation = -210.773640 kcal Electronic energy + Delta-G solvation = -32789.105424 eV Core-core repulsion = 28006.624979 eV Total energy + Delta-G solvation = -4782.480446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.94202 -47.45310 -47.35741 -40.31500 -38.28688 -36.95652 -34.74045 -34.12721 -32.02785 -30.68827 -28.05847 -27.67087 -26.86446 -26.03459 -24.83898 -24.20304 -22.30049 -20.75498 -20.21919 -19.13423 -18.35472 -18.07687 -17.96865 -17.24960 -16.79594 -16.38628 -15.65248 -15.51197 -14.95098 -14.68296 -14.46696 -14.26415 -14.24604 -13.88347 -13.81279 -13.66908 -13.56181 -13.50393 -13.40856 -13.11782 -13.05305 -12.50724 -12.35717 -12.10703 -12.03090 -11.73938 -11.65263 -11.32667 -11.22774 -11.00756 -10.94385 -10.90559 -10.69962 -10.52662 -10.40065 -10.19183 -10.08978 -9.87307 -9.22628 -9.05640 -8.56158 -7.18105 -5.95098 -3.27263 2.69317 2.81332 3.09176 3.32563 3.38588 3.40975 3.81021 3.95895 4.05221 4.17374 4.44733 4.63813 4.83669 4.95792 4.98197 5.10668 5.22159 5.28701 5.30048 5.35640 5.42995 5.51188 5.55810 5.59049 5.65240 5.70236 5.88760 5.93477 6.00850 6.06815 6.13429 6.21150 6.30022 6.43182 6.47387 6.76554 6.84568 7.05571 7.34680 7.53648 7.69749 8.19134 8.33917 9.32895 9.80266 10.16381 11.25295 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007575 B = 0.006828 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.376875 B = 4099.906225 C = 7056.319508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.088 3.912 4 H 0.079 0.921 5 C 0.520 3.480 6 O -0.535 6.535 7 N -0.610 5.610 8 C 0.116 3.884 9 C -0.165 4.165 10 H 0.128 0.872 11 C 0.464 3.536 12 F -0.173 7.173 13 F -0.187 7.187 14 F -0.184 7.184 15 C 0.179 3.821 16 H 0.077 0.923 17 N -0.706 5.706 18 C -0.252 4.252 19 H 0.073 0.927 20 C 0.004 3.996 21 N -0.919 5.919 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.061 3.939 27 C -0.090 4.090 28 C -0.132 4.132 29 C -0.137 4.137 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.389 0.611 36 H 0.257 0.743 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 -3.791 -4.356 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C 0.027 3.973 4 H 0.097 0.903 5 C 0.308 3.692 6 O -0.411 6.411 7 N -0.346 5.346 8 C -0.007 4.007 9 C -0.186 4.186 10 H 0.146 0.854 11 C 0.409 3.591 12 F -0.154 7.154 13 F -0.169 7.169 14 F -0.166 7.166 15 C 0.066 3.934 16 H 0.094 0.906 17 N -0.348 5.348 18 C -0.383 4.383 19 H 0.091 0.909 20 C -0.194 4.194 21 N -0.565 5.565 22 Si 0.733 3.267 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.218 1.218 26 C -0.065 4.065 27 C -0.109 4.109 28 C -0.190 4.190 29 C -0.195 4.195 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.225 0.775 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.770 -4.418 -4.624 11.677 hybrid contribution 0.026 0.930 0.565 1.088 sum -9.744 -3.489 -4.059 11.117 Atomic orbital electron populations 1.22847 0.81344 1.02866 0.99854 1.88000 1.19361 1.25819 1.94359 1.22200 0.97959 0.85602 0.91554 0.90281 1.21032 0.76403 0.80155 0.91576 1.90675 1.48867 1.52190 1.49387 1.48932 1.68241 1.05582 1.11834 1.22097 0.99586 0.91786 0.87278 1.23867 1.04931 0.92359 0.97491 0.85361 1.20299 0.74662 0.84353 0.79750 1.93234 1.82058 1.49937 1.90175 1.93172 1.91147 1.93134 1.39429 1.93153 1.31030 1.96050 1.96329 1.21019 0.90284 0.96624 0.85480 0.90576 1.42534 1.11697 1.61167 1.19393 1.19104 0.99137 1.25537 0.94505 0.90944 1.24672 0.95989 1.00085 0.98620 1.69645 1.03872 1.45108 1.37901 0.86288 0.77289 0.79354 0.83753 1.21681 1.20692 1.21758 1.23817 0.98727 0.87297 0.96626 1.21314 0.92867 1.00640 0.96123 1.22046 1.01756 0.91164 1.03994 1.21712 1.01790 1.00638 0.95324 0.93809 0.94296 0.89416 0.89026 0.90433 0.77507 0.93262 0.87883 0.91732 0.90708 0.91635 0.91340 0.91160 0.92425 0.92288 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.81 101.05 1.09 1.41 16 2 O -0.36 -5.48 9.17 -53.09 -0.49 -5.97 16 3 C 0.09 1.35 1.75 -27.88 -0.05 1.30 16 4 H 0.08 1.09 6.50 -51.93 -0.34 0.75 16 5 C 0.52 8.90 6.40 -10.99 -0.07 8.83 16 6 O -0.54 -10.88 17.04 -12.31 -0.21 -11.09 16 7 N -0.61 -9.34 2.72 -169.30 -0.46 -9.80 16 8 C 0.12 1.63 6.36 -2.41 -0.02 1.61 16 9 C -0.17 -2.39 2.84 -89.22 -0.25 -2.65 16 10 H 0.13 1.95 7.64 -51.93 -0.40 1.55 16 11 C 0.46 6.53 2.53 37.16 0.09 6.63 16 12 F -0.17 -2.76 16.93 2.25 0.04 -2.73 16 13 F -0.19 -2.58 17.17 2.25 0.04 -2.54 16 14 F -0.18 -2.49 16.05 2.25 0.04 -2.45 16 15 C 0.18 2.90 2.96 -66.53 -0.20 2.71 16 16 H 0.08 1.26 7.37 -51.93 -0.38 0.88 16 17 N -0.71 -14.27 3.14 -52.07 -0.16 -14.43 16 18 C -0.25 -5.80 9.32 -15.06 -0.14 -5.95 16 19 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 21 N -0.92 -23.97 13.06 55.49 0.72 -23.24 16 22 Si 0.90 20.14 29.55 -169.99 -5.02 15.12 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.06 0.89 5.52 -2.40 -0.01 0.88 16 27 C -0.09 -1.43 2.69 -90.62 -0.24 -1.67 16 28 C -0.13 -2.36 6.42 37.16 0.24 -2.12 16 29 C -0.14 -1.91 8.99 37.16 0.33 -1.58 16 30 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.32 7.93 -51.93 -0.41 0.90 16 34 H 0.08 0.98 7.22 -51.93 -0.37 0.61 16 35 H 0.39 8.62 6.38 -40.82 -0.26 8.36 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.10 1.60 4.13 -51.93 -0.21 1.39 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.20 6.01 -51.93 -0.31 0.88 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.07 1.33 4.30 -51.93 -0.22 1.11 16 43 H 0.06 0.77 7.55 -51.93 -0.39 0.37 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -27.22 364.47 -5.56 -32.78 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.23 Total: 9.46 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 0.68 Total: 9.40 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.10 Total: -47.47 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.70 Total: -17.06 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.11 Total: -7.72 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.22 -5.56 -32.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099302018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.993 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds