Wall clock time and date at job start Tue Mar 31 2020 21:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.46504 * 120.00381 * 269.99975 * 4 3 2 6 6 C 1.53002 * 109.46810 * 90.00065 * 5 4 3 7 7 N 1.46499 * 109.47033 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00031 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99841 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.99977 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47345 * 179.97438 * 10 8 7 12 12 C 1.76194 * 100.00300 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.38794 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31626 * 120.00289 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99958 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46826 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47119 * 119.99739 * 16 14 12 19 19 H 1.48500 * 109.46872 * 240.00053 * 16 14 12 20 20 C 1.39048 * 119.99754 * 90.00517 * 4 3 2 21 21 C 1.39477 * 120.16020 * 4.99760 * 20 4 3 22 22 C 1.38556 * 117.90656 * 180.02562 * 21 20 4 23 23 C 1.38815 * 118.04129 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.99624 * 179.97438 * 23 22 21 25 25 N 1.31797 * 120.01630 * 0.02820 * 23 22 21 26 26 N 1.28355 * 122.27542 * 359.65818 * 25 23 22 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.08992 * 109.47334 * 209.99920 * 5 4 3 35 35 H 1.08994 * 109.46680 * 330.00544 * 5 4 3 36 36 H 1.09000 * 109.47431 * 300.00525 * 6 5 4 37 37 H 1.09004 * 109.47052 * 59.99943 * 6 5 4 38 38 H 0.96996 * 120.00155 * 359.97438 * 7 6 5 39 39 H 1.09000 * 109.47534 * 300.00527 * 10 8 7 40 40 H 1.09006 * 109.46946 * 60.00577 * 10 8 7 41 41 H 0.97004 * 120.00284 * 180.02562 * 15 14 12 42 42 H 1.07997 * 121.04681 * 359.97438 * 21 20 4 43 43 H 1.08000 * 120.98444 * 179.97438 * 22 21 20 44 44 H 1.09003 * 109.46811 * 90.00530 * 24 23 22 45 45 H 1.08998 * 109.47404 * 210.00159 * 24 23 22 46 46 H 1.09001 * 109.47211 * 330.00686 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2381 1.4423 1.2678 6 6 4.4933 -0.0003 1.7091 7 7 5.2258 -0.0005 2.9777 8 6 5.5634 -1.1679 3.5607 9 8 5.2611 -2.2181 3.0348 10 6 6.3175 -1.1681 4.8655 11 16 6.6193 -2.8747 5.3877 12 6 7.4883 -2.5850 6.8928 13 1 7.6772 -1.5737 7.2211 14 6 7.9300 -3.6566 7.6563 15 7 7.6992 -4.8892 7.2564 16 14 8.8507 -3.3495 9.2525 17 1 8.9791 -1.8871 9.4763 18 1 8.1025 -3.9596 10.3808 19 1 10.2029 -3.9576 9.1687 20 6 4.1996 1.4428 -1.2051 21 6 3.5090 1.5481 -2.4123 22 6 4.2477 1.5431 -3.5846 23 6 5.6280 1.4342 -3.4857 24 6 6.4742 1.4237 -4.7326 25 7 6.1987 1.3390 -2.3015 26 7 5.5212 1.3489 -1.2113 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 5.1904 1.9561 1.1371 35 1 3.6493 1.9559 2.0277 36 1 3.5409 -0.5142 1.8397 37 1 5.0820 -0.5140 0.9490 38 1 5.4686 0.8394 3.3978 39 1 7.2696 -0.6538 4.7350 40 1 5.7285 -0.6548 5.6256 41 1 8.0076 -5.6381 7.7902 42 1 2.4324 1.6302 -2.4328 43 1 3.7639 1.6216 -4.5470 44 1 6.7559 2.4450 -4.9891 45 1 7.3728 0.8323 -4.5570 46 1 5.9061 0.9864 -5.5536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101084635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:25 Heat of formation + Delta-G solvation = 19.611454 kcal Electronic energy + Delta-G solvation = -25977.679192 eV Core-core repulsion = 22222.091356 eV Total energy + Delta-G solvation = -3755.587836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29776 -39.20986 -38.16116 -34.84617 -34.26986 -33.48261 -32.40518 -32.35579 -30.16482 -28.38499 -28.22878 -25.78122 -25.44252 -24.59984 -23.15762 -22.10562 -21.48499 -20.33731 -18.10243 -17.86628 -17.65592 -16.24624 -16.08842 -15.95502 -15.53409 -15.42265 -15.19647 -14.93777 -14.77673 -14.31210 -14.15641 -13.84788 -13.76459 -13.46587 -13.28129 -13.10852 -12.70034 -12.60594 -12.53102 -12.41519 -12.32096 -11.99052 -11.62368 -11.44664 -11.29446 -11.04998 -11.00036 -10.98777 -10.77125 -10.71137 -10.36312 -9.77785 -9.71913 -9.37619 -9.04896 -8.82969 -8.19376 -8.15428 -6.46343 -6.18738 -3.88868 0.61065 0.91666 2.28806 3.12036 3.16105 3.23868 3.31106 3.36894 3.40527 3.78001 4.00111 4.22396 4.23258 4.28017 4.33701 4.51278 4.53458 4.69549 4.81127 4.82974 4.87265 4.94711 5.07533 5.14159 5.16419 5.23290 5.24418 5.26121 5.34395 5.36207 5.50159 5.61285 5.65989 5.68954 5.69967 5.82298 5.90201 5.95101 5.96084 6.04328 6.18487 6.56458 6.70792 6.81861 7.62931 7.74783 8.38566 8.66891 8.68578 9.26646 10.88758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.002091 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.032212 B =13387.235503 C =14530.811425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.123 3.877 4 N -0.594 5.594 5 C 0.118 3.882 6 C 0.107 3.893 7 N -0.736 5.736 8 C 0.533 3.467 9 O -0.517 6.517 10 C -0.152 4.152 11 S -0.062 6.062 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.338 3.662 21 C -0.177 4.177 22 C -0.079 4.079 23 C 0.010 3.990 24 C -0.092 4.092 25 N -0.201 5.201 26 N -0.296 5.296 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.267 0.733 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.752 19.004 -22.330 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C 0.000 4.000 4 N -0.308 5.308 5 C -0.005 4.005 6 C -0.019 4.019 7 N -0.391 5.391 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.303 4.303 11 S 0.165 5.835 12 C -0.682 4.682 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.098 3.902 21 C -0.210 4.210 22 C -0.107 4.107 23 C -0.139 4.139 24 C -0.150 4.150 25 N -0.043 5.043 26 N -0.146 5.146 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.231 0.769 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.949 16.925 -22.125 30.719 hybrid contribution -0.390 1.816 1.007 2.113 sum -13.339 18.741 -21.118 31.227 Atomic orbital electron populations 1.21695 0.94814 1.02414 1.01796 1.22115 0.96365 0.96967 1.03531 1.21711 0.77643 0.97318 1.03356 1.46247 1.04799 1.77698 1.02047 1.21602 0.98190 0.96485 0.84273 1.21692 0.97011 0.96875 0.86327 1.45835 1.60204 1.08966 1.24131 1.20291 0.78705 0.83125 0.85981 1.90702 1.53084 1.31040 1.64318 1.23522 1.02109 1.08418 0.96245 1.85411 1.73511 0.97369 1.27198 1.22908 1.41842 0.95522 1.07922 0.90862 1.25000 0.95847 0.94443 0.98388 1.70031 1.44077 0.98045 1.38165 0.86112 0.79184 0.78439 0.81725 1.19613 1.20602 1.20571 1.20054 0.91424 0.91838 0.86883 1.21862 1.01837 1.05779 0.91550 1.22060 0.94064 0.95340 0.99268 1.22622 0.93078 1.01897 0.96320 1.20537 0.99439 1.03163 0.91892 1.72768 1.30330 1.06548 0.94636 1.73063 1.03731 1.17700 1.20092 0.92128 0.92397 0.92717 0.91660 0.90748 0.90379 0.89646 0.88935 0.89981 0.91725 0.91203 0.76852 0.89117 0.89228 0.92269 0.83629 0.83586 0.90546 0.90255 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.15 -1.06 6.26 -26.73 -0.17 -1.22 16 3 C 0.12 0.73 5.32 -4.04 -0.02 0.71 16 4 N -0.59 -5.19 2.59 -173.69 -0.45 -5.64 16 5 C 0.12 1.09 5.56 -4.04 -0.02 1.07 16 6 C 0.11 1.37 6.00 -4.04 -0.02 1.34 16 7 N -0.74 -10.32 5.56 -60.29 -0.33 -10.65 16 8 C 0.53 10.39 7.85 -10.99 -0.09 10.31 16 9 O -0.52 -12.33 15.86 5.56 0.09 -12.25 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.93 16 11 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 12 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 13 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 14 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 16 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.34 3.55 7.44 -154.77 -1.15 2.40 16 21 C -0.18 -1.39 9.35 -39.00 -0.36 -1.75 16 22 C -0.08 -0.57 9.86 -39.25 -0.39 -0.96 16 23 C 0.01 0.10 6.87 -82.39 -0.57 -0.47 16 24 C -0.09 -0.58 10.19 36.01 0.37 -0.21 16 25 N -0.20 -2.64 11.42 33.61 0.38 -2.26 16 26 N -0.30 -3.97 10.35 31.23 0.32 -3.65 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.67 6.26 -51.93 -0.33 0.34 16 32 H 0.08 0.33 6.03 -51.93 -0.31 0.02 16 33 H 0.09 0.40 7.89 -51.93 -0.41 -0.01 16 34 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 35 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 36 H 0.06 0.86 6.26 -51.93 -0.33 0.54 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 39 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.15 0.73 6.14 -52.49 -0.32 0.40 16 43 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -37.85 398.16 -9.16 -47.01 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.03 Total: -0.19 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.64 Total: -5.31 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.66 Total: -48.02 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.85 -9.16 -47.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101084635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.621 kcal (2) G-P(sol) polarization free energy of solvation -37.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds