Wall clock time and date at job start Tue Mar 31 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47210 * 2 1 4 4 H 1.09006 * 109.46852 * 54.59469 * 3 2 1 5 5 C 1.52994 * 109.47371 * 174.59321 * 3 2 1 6 6 N 1.46503 * 109.47256 * 175.00251 * 5 3 2 7 7 C 1.34774 * 119.99671 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00470 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99757 * 180.02562 * 7 6 5 10 10 S 1.81007 * 109.47119 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99681 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00287 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99614 * 179.97438 * 11 10 9 14 14 N 1.31623 * 119.99968 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99580 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47091 * 90.00364 * 15 13 11 17 17 H 1.48498 * 109.46561 * 209.99945 * 15 13 11 18 18 H 1.48503 * 109.47358 * 329.99944 * 15 13 11 19 19 N 1.46500 * 109.47216 * 294.59968 * 3 2 1 20 20 C 1.38535 * 120.00310 * 124.80181 * 19 3 2 21 21 C 1.39663 * 120.53149 * 354.14541 * 20 19 3 22 22 C 1.38080 * 118.33643 * 180.29654 * 21 20 19 23 23 C 1.50702 * 120.40144 * 179.97438 * 22 21 20 24 24 N 1.32576 * 119.19701 * 359.97438 * 22 21 20 25 25 C 1.31767 * 121.01586 * 0.02562 * 24 22 21 26 26 C 1.50690 * 119.08531 * 180.02562 * 25 24 22 27 27 N 1.31775 * 121.82657 * 0.02562 * 25 24 22 28 28 H 1.09005 * 109.47157 * 175.22265 * 1 2 3 29 29 H 1.09003 * 109.47459 * 295.22441 * 1 2 3 30 30 H 1.09004 * 109.47421 * 55.22446 * 1 2 3 31 31 H 1.09006 * 109.47120 * 240.00591 * 2 1 3 32 32 H 1.08997 * 109.47149 * 120.00624 * 2 1 3 33 33 H 1.08998 * 109.47445 * 295.00329 * 5 3 2 34 34 H 1.09003 * 109.47064 * 55.00117 * 5 3 2 35 35 H 0.96988 * 119.99870 * 359.97438 * 6 5 3 36 36 H 1.08998 * 109.46877 * 299.99485 * 9 7 6 37 37 H 1.08995 * 109.47395 * 59.99805 * 9 7 6 38 38 H 0.97002 * 120.00013 * 180.02562 * 14 13 11 39 39 H 0.97000 * 119.99682 * 304.79145 * 19 3 2 40 40 H 1.08005 * 120.83573 * 0.24987 * 21 20 19 41 41 H 1.08999 * 109.46888 * 269.99914 * 23 22 21 42 42 H 1.08992 * 109.46925 * 30.00036 * 23 22 21 43 43 H 1.08995 * 109.46547 * 150.00060 * 23 22 21 44 44 H 1.09008 * 109.47300 * 270.02163 * 26 25 24 45 45 H 1.09000 * 109.47234 * 30.01760 * 26 25 24 46 46 H 1.08996 * 109.47616 * 150.01838 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 0.8377 5 6 3.5639 1.4447 0.1359 6 7 4.0629 2.8169 0.0163 7 6 5.3850 3.0631 0.1044 8 8 6.1616 2.1489 0.2832 9 6 5.8983 4.4748 -0.0180 10 16 7.7012 4.4772 0.1426 11 6 8.0218 6.2007 -0.0350 12 1 7.2040 6.8889 -0.1900 13 6 9.3253 6.6740 0.0253 14 7 10.3218 5.8352 0.2146 15 14 9.6650 8.5012 -0.1624 16 1 9.6311 9.1506 1.1726 17 1 11.0045 8.6954 -0.7733 18 1 8.6296 9.1102 -1.0356 19 7 1.6607 2.0946 -1.2558 20 6 0.9417 3.2785 -1.2321 21 6 0.4676 3.7965 -0.0248 22 6 -0.2492 4.9763 -0.0544 23 6 -0.7830 5.5765 1.2207 24 7 -0.4623 5.5746 -1.2181 25 6 -0.0016 5.0603 -2.3404 26 6 -0.2687 5.7772 -3.6386 27 7 0.6862 3.9364 -2.3589 28 1 -0.3634 -1.0241 -0.0856 29 1 -0.3634 0.4380 0.9297 30 1 -0.3634 0.5861 -0.8441 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8425 1.0403 1.1090 34 1 3.9998 0.8296 -0.6514 35 1 3.4419 3.5479 -0.1271 36 1 5.6193 4.8796 -0.9908 37 1 5.4629 5.0894 0.7698 38 1 11.2327 6.1660 0.2571 39 1 1.9132 1.6974 -2.1040 40 1 0.6563 3.2868 0.9085 41 1 -1.7832 5.1888 1.4139 42 1 -0.1252 5.3138 2.0491 43 1 -0.8266 6.6610 1.1213 44 1 -1.2053 5.4186 -4.0658 45 1 -0.3406 6.8490 -3.4538 46 1 0.5464 5.5827 -4.3356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102986607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:33 Heat of formation + Delta-G solvation = 0.164082 kcal Electronic energy + Delta-G solvation = -26626.473672 eV Core-core repulsion = 22870.042535 eV Total energy + Delta-G solvation = -3756.431137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28958 -39.45346 -38.01209 -34.85650 -34.24630 -33.68171 -32.43149 -31.22002 -29.97793 -29.35670 -28.12999 -27.81610 -25.49338 -23.75908 -22.92774 -22.41346 -21.11364 -20.27088 -18.38932 -17.85715 -17.40850 -16.40269 -16.13061 -15.74788 -15.60843 -15.46385 -14.96757 -14.80459 -14.70483 -14.33587 -13.98071 -13.87057 -13.62896 -13.43391 -13.14854 -12.93933 -12.93794 -12.70047 -12.62617 -12.50511 -12.41958 -11.99859 -11.82189 -11.56492 -11.41269 -11.10437 -11.06127 -11.02505 -10.75849 -10.73660 -9.83692 -9.80006 -9.45785 -9.36908 -9.07561 -8.95530 -8.43690 -8.25116 -6.50701 -6.21996 -3.92606 0.83598 1.18240 2.57378 2.99903 3.05931 3.22548 3.27633 3.31971 3.62569 3.66035 3.83080 4.06839 4.20271 4.25353 4.43722 4.46862 4.52977 4.84664 4.94703 5.00109 5.01395 5.13244 5.16579 5.23999 5.24706 5.27801 5.31322 5.35739 5.38331 5.50760 5.52939 5.54665 5.62166 5.65806 5.74330 5.77910 5.82458 5.87102 6.12521 6.12996 6.48473 6.55323 6.98705 7.29622 7.59419 7.62684 8.13331 8.35200 8.55935 9.23467 10.85462 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002905 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.797688 B = 9636.108657 C =11405.872258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.136 3.864 4 H 0.101 0.899 5 C 0.108 3.892 6 N -0.736 5.736 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.058 6.058 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.702 5.702 20 C 0.446 3.554 21 C -0.307 4.307 22 C 0.207 3.793 23 C -0.107 4.107 24 N -0.563 5.563 25 C 0.365 3.635 26 C -0.085 4.085 27 N -0.580 5.580 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.395 0.605 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.410 0.590 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.666 -7.395 -0.858 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.030 3.970 4 H 0.119 0.881 5 C -0.018 4.018 6 N -0.390 5.390 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.169 5.831 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.334 5.334 20 C 0.202 3.798 21 C -0.335 4.335 22 C 0.065 3.935 23 C -0.164 4.164 24 N -0.283 5.283 25 C 0.096 3.904 26 C -0.144 4.144 27 N -0.306 5.306 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.246 0.754 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.285 -8.585 -1.163 26.728 hybrid contribution -0.615 1.858 0.041 1.957 sum -25.901 -6.728 -1.121 26.784 Atomic orbital electron populations 1.21726 0.94963 1.01932 1.02095 1.21837 0.96798 0.94673 1.03714 1.21540 0.94025 0.94562 0.86898 0.88143 1.21726 0.92099 0.84889 1.03076 1.45905 1.07861 1.08751 1.76511 1.20298 0.81310 0.91128 0.75351 1.90701 1.55420 1.46143 1.46817 1.23523 1.06882 0.95177 1.04788 1.85351 0.91967 1.11059 1.94771 1.22871 0.95533 0.92441 1.57565 0.90967 1.24988 0.95035 0.98978 0.94534 1.70014 0.99560 1.34554 1.46175 0.86169 0.77835 0.83031 0.78494 1.20237 1.20713 1.19667 1.44513 1.57742 1.21905 1.09275 1.18510 0.86244 0.85797 0.89228 1.21984 1.10549 1.02070 0.98901 1.21371 0.88865 0.89227 0.94064 1.20768 1.01476 1.02252 0.91895 1.68129 1.26304 1.35673 0.98231 1.22905 0.86388 0.86734 0.94343 1.20563 1.03173 0.99994 0.90634 1.67783 1.21925 1.11429 1.29443 0.92368 0.92659 0.92572 0.90859 0.89828 0.90124 0.91024 0.77082 0.89427 0.89370 0.92175 0.75373 0.84120 0.89908 0.90205 0.89891 0.89783 0.89543 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.86 37.16 0.37 -0.47 16 2 C -0.13 -0.72 5.61 -26.73 -0.15 -0.87 16 3 C 0.14 0.96 2.43 -67.93 -0.17 0.80 16 4 H 0.10 0.66 5.35 -51.93 -0.28 0.38 16 5 C 0.11 1.11 5.37 -4.04 -0.02 1.09 16 6 N -0.74 -9.92 5.39 -60.29 -0.32 -10.25 16 7 C 0.53 10.08 7.85 -10.99 -0.09 9.99 16 8 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 9 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 10 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 11 C -0.54 -15.52 9.50 30.94 0.29 -15.22 16 12 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 14 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 15 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 19 N -0.70 -5.88 3.99 -53.78 -0.21 -6.09 16 20 C 0.45 4.65 7.15 -154.79 -1.11 3.54 16 21 C -0.31 -2.91 9.07 -39.11 -0.35 -3.27 16 22 C 0.21 2.12 6.81 -82.33 -0.56 1.56 16 23 C -0.11 -0.75 10.21 36.01 0.37 -0.38 16 24 N -0.56 -6.69 10.27 -7.07 -0.07 -6.76 16 25 C 0.36 4.27 7.64 -157.24 -1.20 3.07 16 26 C -0.09 -0.73 10.32 36.00 0.37 -0.35 16 27 N -0.58 -6.98 10.37 -9.97 -0.10 -7.08 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.39 7.64 -51.93 -0.40 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 4.90 7.64 -40.82 -0.31 4.59 16 36 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.41 3.43 8.95 -40.82 -0.37 3.06 16 40 H 0.14 1.03 5.85 -52.48 -0.31 0.73 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -35.96 399.50 -10.35 -46.31 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.12 Total: 3.68 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.12 Total: -1.47 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.02 Total: -55.81 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.96 -10.35 -46.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.474 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds