Wall clock time and date at job start Tue Mar 31 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 H 1.08991 * 109.47210 * 305.00551 * 3 2 1 5 5 C 1.53000 * 109.46846 * 185.00050 * 3 2 1 6 6 N 1.46499 * 109.46840 * 185.00008 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21553 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.00003 * 180.02562 * 7 6 5 10 10 C 1.39579 * 120.14342 * 359.72364 * 9 7 6 11 11 C 1.37959 * 119.85293 * 179.78880 * 10 9 7 12 12 C 1.38367 * 120.14301 * 0.48764 * 11 10 9 13 13 P 1.81393 * 119.85319 * 179.72019 * 12 11 10 14 14 C 1.82305 * 109.47321 * 330.02196 * 13 12 11 15 15 C 1.82302 * 109.47217 * 90.02411 * 13 12 11 16 16 O 1.47998 * 109.47455 * 210.02658 * 13 12 11 17 17 C 1.38356 * 120.29182 * 359.74570 * 12 11 10 18 18 C 1.37955 * 120.14755 * 0.02562 * 17 12 11 19 19 N 1.46504 * 109.46878 * 65.00452 * 3 2 1 20 20 C 1.36929 * 119.99940 * 274.99762 * 19 3 2 21 21 H 1.08007 * 120.00260 * 359.97438 * 20 19 3 22 22 C 1.38808 * 120.00410 * 180.02562 * 20 19 3 23 23 N 1.31620 * 120.00574 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99716 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47288 * 90.00101 * 24 22 20 26 26 H 1.48504 * 109.47017 * 210.00442 * 24 22 20 27 27 H 1.48498 * 109.47019 * 329.99930 * 24 22 20 28 28 H 1.08993 * 109.47728 * 59.99548 * 1 2 3 29 29 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47313 * 299.99451 * 1 2 3 31 31 H 1.09000 * 109.47255 * 240.00648 * 2 1 3 32 32 H 1.08994 * 109.47464 * 119.99975 * 2 1 3 33 33 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 34 34 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 36 36 H 1.07994 * 120.07315 * 0.02562 * 10 9 7 37 37 H 1.08000 * 119.93088 * 180.23307 * 11 10 9 38 38 H 1.09011 * 109.46766 * 60.00148 * 14 13 12 39 39 H 1.09001 * 109.47217 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.47159 * 300.00425 * 14 13 12 41 41 H 1.08996 * 109.47212 * 59.99889 * 15 13 12 42 42 H 1.09004 * 109.47014 * 180.02562 * 15 13 12 43 43 H 1.08996 * 109.46876 * 299.99737 * 15 13 12 44 44 H 1.08003 * 119.92720 * 179.97438 * 17 12 11 45 45 H 1.08001 * 120.07730 * 179.97438 * 18 17 12 46 46 H 0.96996 * 120.00090 * 94.99890 * 19 3 2 47 47 H 0.97004 * 120.00299 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1650 2.1465 -0.2597 9 6 5.8884 4.4481 0.0346 10 6 4.9956 5.5036 0.2273 11 6 5.4716 6.7931 0.3442 12 6 6.8301 7.0425 0.2607 13 15 7.4468 8.7420 0.4079 14 6 6.1882 9.9018 -0.2200 15 6 7.7952 9.1126 2.1585 16 8 8.6891 8.8864 -0.3836 17 6 7.7200 6.0014 0.0649 18 6 7.2575 4.7067 -0.0489 19 7 1.6524 2.0975 1.2519 20 6 0.4156 2.6734 1.3690 21 1 -0.2741 2.6453 0.5383 22 6 0.0486 3.2944 2.5549 23 7 -1.1404 3.8476 2.6676 24 14 1.2422 3.3450 3.9910 25 1 2.0770 4.5695 3.8979 26 1 0.4816 3.3601 5.2664 27 1 2.1166 2.1455 3.9503 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0378 -1.0961 35 1 3.4409 3.5484 0.1316 36 1 3.9348 5.3107 0.2886 37 1 4.7822 7.6103 0.4971 38 1 5.2732 9.7956 0.3629 39 1 6.5587 10.9231 -0.1312 40 1 5.9800 9.6802 -1.2667 41 1 8.5477 8.4192 2.5339 42 1 8.1653 10.1341 2.2470 43 1 6.8802 9.0064 2.7413 44 1 8.7791 6.2028 0.0002 45 1 7.9531 3.8949 -0.2021 46 1 2.2719 2.1231 1.9978 47 1 -1.3968 4.2818 3.4963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267831727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:41 Heat of formation + Delta-G solvation = -63.704469 kcal Electronic energy + Delta-G solvation = -26611.029079 eV Core-core repulsion = 22872.777620 eV Total energy + Delta-G solvation = -3738.251460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -40.24655 -38.41713 -36.93841 -34.08405 -33.28895 -32.50878 -31.47256 -31.30412 -30.36538 -29.24970 -28.15227 -28.03756 -24.51083 -23.33646 -22.86685 -22.23750 -20.51041 -20.10750 -18.48506 -17.60433 -16.92835 -16.21056 -15.67027 -15.16410 -15.10644 -14.92252 -14.80207 -14.28249 -14.14332 -14.02752 -13.82600 -13.73735 -13.46634 -13.34391 -13.24544 -13.17289 -12.96786 -12.83235 -12.59289 -12.44191 -12.25087 -11.82509 -11.65434 -11.45693 -11.28300 -11.10492 -10.85626 -10.50204 -10.39922 -10.15874 -10.07720 -9.98236 -9.88203 -9.61173 -9.52313 -9.32304 -9.11047 -8.92281 -7.47706 -5.93938 -3.30408 0.31056 1.03951 1.23092 2.62982 3.18226 3.21653 3.26628 3.31952 3.57116 4.18807 4.35707 4.40158 4.41885 4.54398 4.57607 4.62029 4.66292 4.94395 5.00558 5.07343 5.09475 5.16735 5.17039 5.33320 5.41824 5.53990 5.60662 5.63100 5.64771 5.78599 5.79132 5.81901 5.86296 5.94452 6.06855 6.17516 6.35032 6.41551 6.49432 6.54055 6.64139 6.84446 7.20396 7.21852 7.58968 7.81765 8.20760 8.24356 9.01921 9.74260 9.93634 11.23530 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003018 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.351423 B = 9275.139447 C =10727.400138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.110 3.890 6 N -0.709 5.709 7 C 0.548 3.452 8 O -0.541 6.541 9 C -0.094 4.094 10 C -0.101 4.101 11 C -0.081 4.081 12 C -0.713 4.713 13 P 2.559 2.441 14 C -0.812 4.812 15 C -0.809 4.809 16 O -1.003 7.003 17 C -0.050 4.050 18 C -0.079 4.079 19 N -0.748 5.748 20 C -0.243 4.243 21 H 0.096 0.904 22 C 0.009 3.991 23 N -0.929 5.929 24 Si 0.877 3.123 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.564 8.104 -4.980 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.014 4.014 6 N -0.361 5.361 7 C 0.334 3.666 8 O -0.420 6.420 9 C -0.097 4.097 10 C -0.120 4.120 11 C -0.099 4.099 12 C -0.702 4.702 13 P 2.628 2.372 14 C -0.856 4.856 15 C -0.854 4.854 16 O -1.106 7.106 17 C -0.067 4.067 18 C -0.098 4.098 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.114 0.886 22 C -0.187 4.187 23 N -0.576 5.576 24 Si 0.707 3.293 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.167 0.833 45 H 0.161 0.839 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.045 7.432 -4.644 17.412 hybrid contribution -0.794 0.208 1.933 2.100 sum 14.251 7.639 -2.711 16.395 Atomic orbital electron populations 1.21778 0.95127 0.99807 1.03763 1.22032 0.97414 0.97682 1.00208 1.20566 0.89681 0.93179 0.90790 0.91830 1.21804 0.95690 0.82096 1.01791 1.45985 1.06893 1.11215 1.71971 1.18281 0.82746 0.88189 0.77356 1.90756 1.56075 1.45586 1.49613 1.20309 0.94841 0.93361 1.01149 1.21576 1.00190 0.92701 0.97511 1.20959 0.94158 0.97474 0.97305 1.33231 1.00604 1.25345 1.11036 0.89731 0.52124 0.45774 0.49554 1.31854 1.20827 1.20031 1.12938 1.31841 1.09725 1.10885 1.32999 1.95055 1.52925 1.88153 1.74439 1.20992 1.00210 0.91354 0.94161 1.21492 0.94430 0.97743 0.96137 1.42862 1.16978 1.67698 1.11610 1.19063 0.90872 1.27428 0.99938 0.88650 1.24645 0.96323 1.00364 0.97382 1.69685 1.19204 1.41951 1.26793 0.86685 0.81051 0.77708 0.83850 1.21325 1.21678 1.20319 0.93842 0.94763 0.89387 0.93444 0.92615 0.91555 0.91046 0.75291 0.84523 0.85159 0.88976 0.87258 0.86895 0.87075 0.87360 0.89016 0.83272 0.83916 0.80546 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.84 2.59 -67.92 -0.18 2.67 16 4 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 5 C 0.11 1.70 5.23 -4.04 -0.02 1.68 16 6 N -0.71 -10.89 5.34 -61.25 -0.33 -11.22 16 7 C 0.55 8.70 7.77 -12.33 -0.10 8.61 16 8 O -0.54 -9.93 16.35 5.32 0.09 -9.85 16 9 C -0.09 -1.28 5.87 -104.97 -0.62 -1.90 16 10 C -0.10 -1.24 9.54 -39.18 -0.37 -1.61 16 11 C -0.08 -0.80 9.56 -39.64 -0.38 -1.18 16 12 C -0.71 -6.39 6.19 -39.49 -0.24 -6.64 16 13 P 2.56 16.66 5.23 -42.89 -0.22 16.44 16 14 C -0.81 -4.90 10.54 101.05 1.06 -3.84 16 15 C -0.81 -5.02 11.06 101.05 1.12 -3.90 16 16 O -1.00 -10.28 18.40 21.61 0.40 -9.89 16 17 C -0.05 -0.50 9.67 -39.64 -0.38 -0.88 16 18 C -0.08 -0.97 9.60 -39.18 -0.38 -1.34 16 19 N -0.75 -15.46 4.31 -53.42 -0.23 -15.69 16 20 C -0.24 -6.04 8.23 -15.06 -0.12 -6.16 16 21 H 0.10 2.55 7.56 -52.48 -0.40 2.16 16 22 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 23 N -0.93 -27.12 13.97 55.49 0.78 -26.35 16 24 Si 0.88 20.68 27.74 -169.99 -4.71 15.96 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.85 5.99 -51.92 -0.31 1.54 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.41 6.16 6.17 -40.82 -0.25 5.90 16 36 H 0.14 1.61 6.41 -52.49 -0.34 1.28 16 37 H 0.13 0.87 7.26 -52.49 -0.38 0.49 16 38 H 0.09 0.44 7.64 -51.92 -0.40 0.05 16 39 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.15 1.13 8.03 -52.48 -0.42 0.71 16 45 H 0.14 1.66 7.65 -52.49 -0.40 1.26 16 46 H 0.36 7.65 5.66 -40.82 -0.23 7.42 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -34.41 396.53 -6.14 -40.55 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -7.37 Total: 12.91 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -0.51 Total: -18.84 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.22 Total: -53.25 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.48 Total: -19.73 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Atomic # 15 Polarization: 16.66 SS G_CDS: -0.22 Total: 16.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.41 -6.14 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267831727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.154 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds