Wall clock time and date at job start Tue Mar 31 2020 21:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 N 1.46495 * 109.47068 * 174.99916 * 5 3 2 7 7 C 1.34784 * 119.99706 * 180.02562 * 6 5 3 8 8 O 1.21554 * 119.99912 * 359.97438 * 7 6 5 9 9 C 1.47840 * 119.99715 * 180.02562 * 7 6 5 10 10 C 1.39572 * 120.14932 * 359.71780 * 9 7 6 11 11 C 1.37956 * 119.85445 * 179.78999 * 10 9 7 12 12 C 1.38363 * 120.14501 * 0.49218 * 11 10 9 13 13 P 1.81404 * 119.85342 * 179.71796 * 12 11 10 14 14 C 1.82299 * 109.47200 * 330.02414 * 13 12 11 15 15 C 1.82301 * 109.47107 * 90.02195 * 13 12 11 16 16 O 1.47995 * 109.47014 * 210.02293 * 13 12 11 17 17 C 1.38351 * 120.29276 * 359.74283 * 12 11 10 18 18 C 1.37967 * 120.14711 * 0.02562 * 17 12 11 19 19 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 20 20 C 1.36944 * 120.00088 * 84.99964 * 19 3 2 21 21 H 1.08000 * 119.99709 * 359.97438 * 20 19 3 22 22 C 1.38811 * 119.99796 * 180.02562 * 20 19 3 23 23 N 1.31614 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99659 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47223 * 89.99940 * 24 22 20 26 26 H 1.48500 * 109.47018 * 209.99690 * 24 22 20 27 27 H 1.48499 * 109.47023 * 329.99851 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.08994 * 109.47064 * 295.00931 * 5 3 2 34 34 H 1.09009 * 109.46393 * 55.00173 * 5 3 2 35 35 H 0.96997 * 120.00558 * 0.02562 * 6 5 3 36 36 H 1.08004 * 120.07200 * 0.02562 * 10 9 7 37 37 H 1.08004 * 119.92619 * 180.22906 * 11 10 9 38 38 H 1.08996 * 109.47131 * 59.99567 * 14 13 12 39 39 H 1.08995 * 109.47120 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.47224 * 299.99942 * 14 13 12 41 41 H 1.09004 * 109.46814 * 59.99842 * 15 13 12 42 42 H 1.08995 * 109.46957 * 179.97438 * 15 13 12 43 43 H 1.08996 * 109.46951 * 300.00266 * 15 13 12 44 44 H 1.08005 * 119.93107 * 179.97438 * 17 12 11 45 45 H 1.07993 * 120.07602 * 179.97438 * 18 17 12 46 46 H 0.96998 * 120.00208 * 264.99507 * 19 3 2 47 47 H 0.97001 * 119.99935 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1652 2.1463 0.2578 9 6 5.8884 4.4481 -0.0345 10 6 4.9965 5.5024 -0.2367 11 6 5.4718 6.7931 -0.3438 12 6 6.8302 7.0424 -0.2613 13 15 7.4472 8.7417 -0.4109 14 6 6.3291 9.7019 -1.4837 15 6 7.5144 9.5113 1.2404 16 8 8.8037 8.7237 -1.0024 17 6 7.7202 6.0013 -0.0658 18 6 7.2576 4.7064 0.0477 19 7 1.6524 2.0975 -1.2518 20 6 0.4155 2.6736 -1.3687 21 1 -0.2743 2.6446 -0.5382 22 6 0.0481 3.2937 -2.5550 23 7 0.8887 3.3285 -3.5672 24 14 -1.6393 4.0789 -2.7147 25 1 -1.5675 5.4984 -2.2844 26 1 -2.0842 4.0126 -4.1300 27 1 -2.6076 3.3499 -1.8567 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8499 1.0377 1.0960 34 1 3.9954 0.8311 -0.6660 35 1 3.4409 3.5484 -0.1308 36 1 3.9361 5.3087 -0.3054 37 1 4.7823 7.6103 -0.4966 38 1 5.3301 9.7151 -1.0481 39 1 6.7001 10.7228 -1.5739 40 1 6.2889 9.2418 -2.4711 41 1 8.1829 8.9371 1.8819 42 1 7.8855 10.5322 1.1505 43 1 6.5153 9.5244 1.6760 44 1 8.7795 6.2025 -0.0027 45 1 7.9534 3.8946 0.1999 46 1 2.2718 2.1232 -1.9978 47 1 0.6321 3.7622 -4.3960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267831728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:48 Heat of formation + Delta-G solvation = -67.517759 kcal Electronic energy + Delta-G solvation = -26504.871488 eV Core-core repulsion = 22766.454672 eV Total energy + Delta-G solvation = -3738.416816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -40.11692 -38.29155 -36.75047 -33.94792 -33.22384 -32.51006 -31.37705 -31.20692 -29.81398 -29.19328 -27.99932 -27.90152 -24.45793 -23.45779 -22.87330 -22.20318 -20.37490 -19.93598 -18.25233 -17.33300 -16.83237 -16.09763 -15.47263 -15.07516 -15.03057 -14.81138 -14.70069 -14.15327 -14.07830 -13.96298 -13.79302 -13.67419 -13.41243 -13.31228 -13.20987 -13.10960 -12.95728 -12.67006 -12.43362 -12.24838 -12.15286 -11.74203 -11.53513 -11.35974 -11.06779 -10.96785 -10.83600 -10.53238 -10.27751 -10.12677 -10.00462 -9.92246 -9.77636 -9.62980 -9.41792 -9.22316 -9.06174 -8.76422 -7.14375 -5.91422 -3.21366 0.41551 1.13952 1.28516 2.74854 3.29897 3.34833 3.37837 3.39123 3.69179 4.24151 4.42234 4.44381 4.47202 4.58867 4.66205 4.67428 4.78104 5.01396 5.10242 5.16019 5.25055 5.29886 5.34513 5.45837 5.52095 5.56727 5.67016 5.72133 5.81978 5.86966 5.87752 5.90910 5.96046 6.05971 6.17986 6.33541 6.43975 6.48451 6.52664 6.63513 6.76126 6.93410 7.17049 7.28096 7.56533 7.74743 8.25463 8.35753 9.37554 9.91988 10.28054 11.30143 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.002921 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.302027 B = 9582.004634 C =11474.890542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.703 5.703 7 C 0.548 3.452 8 O -0.545 6.545 9 C -0.091 4.091 10 C -0.098 4.098 11 C -0.082 4.082 12 C -0.714 4.714 13 P 2.559 2.441 14 C -0.811 4.811 15 C -0.809 4.809 16 O -1.003 7.003 17 C -0.051 4.051 18 C -0.080 4.080 19 N -0.722 5.722 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.149 0.851 45 H 0.142 0.858 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 9.615 9.604 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.355 5.355 7 C 0.334 3.666 8 O -0.424 6.424 9 C -0.094 4.094 10 C -0.116 4.116 11 C -0.099 4.099 12 C -0.703 4.703 13 P 2.628 2.372 14 C -0.856 4.856 15 C -0.854 4.854 16 O -1.106 7.106 17 C -0.068 4.068 18 C -0.099 4.099 19 N -0.365 5.365 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.274 9.021 10.106 17.002 hybrid contribution -2.392 0.692 -0.157 2.495 sum 7.882 9.713 9.949 15.983 Atomic orbital electron populations 1.21768 0.95654 0.99708 1.03238 1.22062 0.97017 0.98248 1.00119 1.20577 0.89758 0.92988 0.91449 0.92842 1.21744 0.95788 0.82185 1.01374 1.45937 1.06798 1.11182 1.71575 1.18263 0.82800 0.88138 0.77390 1.90747 1.56115 1.45608 1.49940 1.20313 0.94792 0.93433 1.00861 1.21569 1.00270 0.92620 0.97188 1.20935 0.94061 0.97559 0.97390 1.33193 1.00534 1.25378 1.11189 0.89730 0.53140 0.45836 0.48477 1.31854 1.17865 1.16857 1.19064 1.31841 1.08415 1.14279 1.30837 1.95055 1.46099 1.88724 1.80732 1.20976 1.00009 0.91506 0.94340 1.21490 0.94450 0.97676 0.96267 1.42478 1.16833 1.65887 1.11290 1.19203 0.91982 1.27873 0.98040 0.90887 1.24736 0.98026 1.01542 0.96323 1.69659 1.35209 1.48723 1.03979 0.86273 0.84184 0.79201 0.77007 1.21850 1.21778 1.20694 0.94138 0.94801 0.89659 0.93785 0.92440 0.91575 0.91496 0.75231 0.84491 0.85293 0.89041 0.87326 0.86798 0.87106 0.87422 0.89098 0.83363 0.83981 0.78067 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.90 2.59 -67.93 -0.18 2.72 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.11 1.88 5.23 -4.04 -0.02 1.86 16 6 N -0.70 -11.57 5.34 -61.25 -0.33 -11.90 16 7 C 0.55 9.26 7.77 -12.33 -0.10 9.16 16 8 O -0.54 -10.56 16.35 5.32 0.09 -10.47 16 9 C -0.09 -1.32 5.87 -104.97 -0.62 -1.94 16 10 C -0.10 -1.27 9.54 -39.19 -0.37 -1.65 16 11 C -0.08 -0.85 9.56 -39.64 -0.38 -1.23 16 12 C -0.71 -6.78 6.19 -39.49 -0.24 -7.03 16 13 P 2.56 17.66 5.23 -42.89 -0.22 17.44 16 14 C -0.81 -5.47 10.54 101.05 1.06 -4.40 16 15 C -0.81 -4.82 11.06 101.05 1.12 -3.70 16 16 O -1.00 -10.89 18.40 21.61 0.40 -10.49 16 17 C -0.05 -0.54 9.67 -39.64 -0.38 -0.92 16 18 C -0.08 -1.04 9.60 -39.18 -0.38 -1.41 16 19 N -0.72 -15.92 4.51 -53.42 -0.24 -16.16 16 20 C -0.24 -5.88 7.75 -15.06 -0.12 -6.00 16 21 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.03 13.06 55.49 0.72 -25.30 16 24 Si 0.90 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.76 5.99 -51.93 -0.31 1.45 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.41 6.67 6.17 -40.82 -0.25 6.42 16 36 H 0.14 1.75 6.41 -52.48 -0.34 1.41 16 37 H 0.13 0.92 7.26 -52.48 -0.38 0.54 16 38 H 0.09 0.48 7.64 -51.93 -0.40 0.09 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.15 1.21 8.03 -52.48 -0.42 0.79 16 45 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 46 H 0.39 9.37 7.80 -40.82 -0.32 9.06 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -33.54 399.64 -6.50 -40.03 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -7.41 Total: 14.44 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.51 Total: -19.48 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.16 Total: -53.37 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.48 Total: -20.96 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 15 Polarization: 17.66 SS G_CDS: -0.22 Total: 17.44 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.54 -6.50 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267831728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.484 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds