Wall clock time and date at job start Tue Mar 31 2020 20:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47342 * 2 1 4 4 C 1.53007 * 109.47191 * 239.99753 * 2 1 3 5 5 C 1.52997 * 109.46977 * 65.22093 * 4 2 1 6 6 F 1.39904 * 109.47083 * 64.32018 * 5 4 2 7 7 F 1.39896 * 109.47191 * 184.31774 * 5 4 2 8 8 F 1.39896 * 109.47270 * 304.32284 * 5 4 2 9 9 C 1.50705 * 109.47446 * 119.99854 * 2 1 3 10 10 O 1.21284 * 120.00059 * 121.86962 * 9 2 1 11 11 N 1.34776 * 119.99630 * 301.87534 * 9 2 1 12 12 C 1.47147 * 120.98617 * 355.06778 * 11 9 2 13 13 C 1.53293 * 108.38747 * 129.48430 * 12 11 9 14 14 O 1.42960 * 109.26537 * 52.27962 * 13 12 11 15 15 C 1.42960 * 114.16530 * 297.50336 * 14 13 12 16 16 H 1.08997 * 109.51199 * 302.54476 * 15 14 13 17 17 C 1.53001 * 109.50852 * 182.44548 * 15 14 13 18 18 N 1.46506 * 109.46866 * 65.10157 * 17 15 14 19 19 C 1.36947 * 119.99630 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99991 * 359.71751 * 19 18 17 21 21 C 1.38810 * 119.99623 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00310 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99598 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47308 * 90.00197 * 23 21 19 25 25 H 1.48502 * 109.46942 * 209.99958 * 23 21 19 26 26 H 1.48499 * 109.47311 * 329.99799 * 23 21 19 27 27 C 1.47154 * 120.98046 * 175.08781 * 11 9 2 28 28 H 1.09007 * 109.46847 * 281.74373 * 1 2 3 29 29 H 1.08995 * 109.47236 * 41.74127 * 1 2 3 30 30 H 1.09000 * 109.47214 * 161.74482 * 1 2 3 31 31 H 1.09003 * 109.47359 * 193.55361 * 3 2 1 32 32 H 1.08997 * 109.46819 * 313.54921 * 3 2 1 33 33 H 1.08998 * 109.47476 * 73.54709 * 3 2 1 34 34 H 1.08997 * 109.47213 * 185.22304 * 4 2 1 35 35 H 1.09002 * 109.47026 * 305.22080 * 4 2 1 36 36 H 1.08999 * 109.67803 * 249.21230 * 12 11 9 37 37 H 1.09005 * 109.68139 * 9.72365 * 12 11 9 38 38 H 1.09005 * 109.51270 * 172.22310 * 13 12 11 39 39 H 1.08992 * 109.51349 * 292.32381 * 13 12 11 40 40 H 1.09000 * 109.47293 * 305.10300 * 17 15 14 41 41 H 1.08998 * 109.46989 * 185.09668 * 17 15 14 42 42 H 0.96995 * 120.00548 * 359.97438 * 18 17 15 43 43 H 0.97000 * 120.00254 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.68108 * 110.78757 * 27 11 9 45 45 H 1.09004 * 109.68158 * 350.23283 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6400 0.0717 -2.4950 6 9 2.2807 1.3153 -2.4819 7 9 2.0196 -0.6363 -3.6403 8 9 0.2539 0.2613 -2.5020 9 6 2.0324 -0.7104 1.2305 10 8 2.7574 -1.6763 1.1195 11 7 1.6759 -0.2723 2.4542 12 6 0.8866 0.9587 2.6179 13 6 -0.3076 0.6500 3.5281 14 8 0.1618 0.0326 4.7290 15 6 0.8132 -1.2236 4.5252 16 1 0.1341 -1.9075 4.0161 17 6 1.2160 -1.8155 5.8773 18 7 0.0122 -2.1272 6.6520 19 6 0.1254 -2.6699 7.9043 20 1 1.1019 -2.8723 8.3189 21 6 -1.0152 -2.9647 8.6385 22 7 -2.2053 -2.7231 8.1310 23 14 -0.8608 -3.7055 10.3463 24 1 -0.7947 -2.6169 11.3541 25 1 -2.0407 -4.5641 10.6219 26 1 0.3756 -4.5247 10.4207 27 6 2.0648 -1.0108 3.6661 28 1 -0.3633 0.2092 1.0062 29 1 -0.3633 0.7668 -0.6841 30 1 -0.3634 -0.9759 -0.3219 31 1 3.1031 1.4521 -0.2408 32 1 1.4936 2.0210 -0.7448 33 1 1.8867 1.8821 0.9855 34 1 3.1259 -0.8031 -1.2037 35 1 1.6023 -1.7185 -1.2972 36 1 1.5044 1.7330 3.0728 37 1 0.5297 1.2981 1.6455 38 1 -0.8270 1.5763 3.7740 39 1 -0.9916 -0.0255 3.0146 40 1 1.8229 -1.0936 6.4238 41 1 1.7916 -2.7273 5.7178 42 1 -0.8648 -1.9485 6.2784 43 1 -3.0023 -2.9295 8.6440 44 1 2.8012 -0.4348 4.2265 45 1 2.4875 -1.9762 3.3879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280652913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:37 Heat of formation + Delta-G solvation = -198.728249 kcal Electronic energy + Delta-G solvation = -31218.322314 eV Core-core repulsion = 26436.364195 eV Total energy + Delta-G solvation = -4781.958119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.54759 -47.99889 -47.98525 -41.12558 -38.68095 -36.50878 -35.10772 -34.47364 -32.28294 -30.51594 -29.67952 -28.31577 -27.89499 -25.79128 -24.61916 -23.53512 -23.10867 -21.68915 -20.77516 -19.50585 -18.95173 -18.69683 -17.34925 -17.19622 -16.83045 -16.57457 -16.20874 -15.69054 -15.36189 -15.17456 -14.91973 -14.76347 -14.57670 -14.50086 -14.39213 -14.31227 -14.12000 -14.02053 -13.91260 -13.21571 -13.09139 -12.85980 -12.68646 -12.48011 -12.32663 -12.21262 -12.16385 -11.95723 -11.63534 -11.54583 -11.25303 -11.05525 -10.88928 -10.81125 -10.49036 -10.11776 -9.97145 -9.81196 -9.67220 -8.88114 -8.64166 -6.91001 -5.74279 -3.03159 2.26708 2.32782 2.67238 3.41949 3.45287 3.50065 3.51847 3.53239 3.68674 3.87407 4.00502 4.25848 4.29792 4.49216 4.54373 4.64797 4.77037 4.94183 4.96431 5.04397 5.10965 5.13877 5.23866 5.30310 5.34045 5.35810 5.37872 5.58396 5.58702 5.60949 5.69725 5.78977 5.83101 5.90126 6.19304 6.24803 6.52675 6.66177 7.09311 7.40122 7.70771 7.83933 8.43781 9.55563 10.12066 10.47827 11.48534 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.002298 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.776393 B =12180.978282 C =12280.312459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.169 4.169 4 C -0.144 4.144 5 C 0.455 3.545 6 F -0.181 7.181 7 F -0.184 7.184 8 F -0.179 7.179 9 C 0.532 3.468 10 O -0.537 6.537 11 N -0.606 5.606 12 C 0.050 3.950 13 C 0.043 3.957 14 O -0.356 6.356 15 C 0.074 3.926 16 H 0.064 0.936 17 C 0.163 3.837 18 N -0.727 5.727 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.086 3.914 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.079 0.921 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 10.874 -23.403 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.085 4.085 3 C -0.226 4.226 4 C -0.182 4.182 5 C 0.401 3.599 6 F -0.162 7.162 7 F -0.165 7.165 8 F -0.161 7.161 9 C 0.320 3.680 10 O -0.413 6.413 11 N -0.339 5.339 12 C -0.073 4.073 13 C -0.035 4.035 14 O -0.274 6.274 15 C 0.015 3.985 16 H 0.082 0.918 17 C 0.035 3.965 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.037 4.037 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.644 10.373 -23.149 26.494 hybrid contribution -0.321 -0.262 0.364 0.552 sum 7.323 10.111 -22.785 25.981 Atomic orbital electron populations 1.22614 0.91246 1.04523 1.04465 1.20674 0.98362 0.97165 0.92321 1.22583 1.02771 0.92795 1.04443 1.22768 1.06238 1.00214 0.89028 1.20531 0.74859 0.78581 0.85945 1.93177 1.81767 1.44631 1.96641 1.93198 1.91109 1.78394 1.53812 1.93163 1.30882 1.95409 1.96612 1.20097 0.80141 0.83900 0.83882 1.90717 1.36669 1.27763 1.86192 1.48014 1.54095 1.25946 1.05876 1.23117 0.94585 0.87033 1.02555 1.22967 0.94249 0.99177 0.87087 1.88174 1.75912 1.34863 1.28452 1.22808 0.92283 0.85641 0.97776 0.91818 1.20617 0.91599 0.96187 0.88083 1.42229 1.02778 1.75629 1.16464 1.19223 0.92708 1.33096 0.92056 0.91127 1.24743 0.95234 1.02215 0.98763 1.69671 0.96663 1.54020 1.37706 0.86174 0.76813 0.78634 0.84470 1.21706 1.21795 1.20754 1.22384 0.98009 0.98645 0.84657 0.90324 0.89639 0.91113 0.91085 0.90153 0.90316 0.86290 0.86482 0.90089 0.87004 0.87655 0.92689 0.95246 0.94643 0.77917 0.93541 0.90272 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 6.80 37.15 0.25 -1.00 16 2 C -0.08 -0.67 0.52 -155.66 -0.08 -0.75 16 3 C -0.17 -1.13 6.60 37.16 0.25 -0.88 16 4 C -0.14 -1.12 3.83 -26.73 -0.10 -1.23 16 5 C 0.45 3.51 2.98 37.16 0.11 3.62 16 6 F -0.18 -1.41 13.94 2.25 0.03 -1.38 16 7 F -0.18 -1.61 17.32 2.25 0.04 -1.57 16 8 F -0.18 -1.41 13.93 2.25 0.03 -1.38 16 9 C 0.53 6.19 6.49 -10.98 -0.07 6.12 16 10 O -0.54 -7.98 15.39 5.55 0.09 -7.89 16 11 N -0.61 -6.98 2.99 -172.28 -0.51 -7.49 16 12 C 0.05 0.45 3.98 -3.54 -0.01 0.43 16 13 C 0.04 0.49 6.75 37.31 0.25 0.74 16 14 O -0.36 -5.90 10.33 -35.23 -0.36 -6.27 16 15 C 0.07 1.21 2.81 -26.58 -0.07 1.14 16 16 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 17 C 0.16 3.29 5.93 -4.04 -0.02 3.27 16 18 N -0.73 -18.74 5.55 -59.90 -0.33 -19.08 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.09 1.16 5.91 -3.53 -0.02 1.14 16 28 H 0.08 0.58 4.16 -51.93 -0.22 0.36 16 29 H 0.08 0.53 5.95 -51.93 -0.31 0.22 16 30 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.07 0.49 7.81 -51.93 -0.41 0.08 16 32 H 0.08 0.47 6.20 -51.93 -0.32 0.15 16 33 H 0.08 0.48 4.84 -51.93 -0.25 0.23 16 34 H 0.12 0.93 7.92 -51.93 -0.41 0.52 16 35 H 0.12 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 37 H 0.11 0.74 3.11 -51.93 -0.16 0.57 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.61 7.49 -51.93 -0.39 0.23 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.39 10.60 7.67 -40.82 -0.31 10.28 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 1.46 7.12 -51.93 -0.37 1.09 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -33.40 354.63 -5.81 -39.21 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.06 Total: 5.56 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 0.23 Total: 5.18 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.12 Total: -54.32 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.28 Total: -14.16 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.10 Total: -4.33 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.40 -5.81 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280652913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.519 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds