Wall clock time and date at job start Tue Mar 31 2020 21:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47402 * 51.26324 * 3 2 1 5 5 C 1.37102 * 119.99859 * 269.99968 * 4 3 2 6 6 H 1.07997 * 119.99453 * 195.20412 * 5 4 3 7 7 C 1.38946 * 119.99887 * 15.20453 * 5 4 3 8 8 N 1.31406 * 120.00311 * 10.25098 * 7 5 4 9 9 Si 1.86802 * 119.99611 * 190.24878 * 7 5 4 10 10 H 1.48497 * 109.47476 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46993 * 120.00338 * 9 7 5 12 12 H 1.48510 * 109.46888 * 240.00079 * 9 7 5 13 13 C 1.34774 * 120.00072 * 89.99787 * 4 3 2 14 14 O 1.21296 * 119.99735 * 355.06424 * 13 4 3 15 15 C 1.50704 * 120.00242 * 175.05884 * 13 4 3 16 16 C 1.52993 * 109.47126 * 173.78632 * 15 13 4 17 17 O 1.42902 * 113.41981 * 308.46714 * 16 15 13 18 18 C 1.53500 * 114.20597 * 175.26516 * 16 15 13 19 19 N 1.47071 * 88.04679 * 220.37935 * 18 16 15 20 20 C 1.34781 * 136.05408 * 207.05764 * 19 18 16 21 21 O 1.21509 * 119.99773 * 359.97438 * 20 19 18 22 22 O 1.34632 * 120.00085 * 180.02562 * 20 19 18 23 23 C 1.45198 * 117.00295 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47094 * 59.99640 * 23 22 20 25 25 C 1.53004 * 109.47451 * 179.97438 * 23 22 20 26 26 C 1.53003 * 109.47069 * 299.99801 * 23 22 20 27 27 C 1.47063 * 87.88706 * 27.09003 * 19 18 16 28 28 H 4.40633 * 5.51504 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47380 * 291.25940 * 3 2 1 30 30 H 1.09000 * 109.47403 * 171.26281 * 3 2 1 31 31 H 0.96995 * 120.00383 * 184.99204 * 8 7 5 32 32 H 1.09001 * 109.46345 * 53.79057 * 15 13 4 33 33 H 1.08992 * 109.47270 * 293.79241 * 15 13 4 34 34 H 0.96703 * 113.99700 * 40.29663 * 17 16 15 35 35 H 1.08996 * 113.46764 * 105.57153 * 18 16 15 36 36 H 1.08995 * 113.46479 * 335.18289 * 18 16 15 37 37 H 1.09002 * 109.46997 * 60.00470 * 24 23 22 38 38 H 1.09000 * 109.46824 * 179.97438 * 24 23 22 39 39 H 1.08995 * 109.47166 * 300.00047 * 24 23 22 40 40 H 1.09001 * 109.46705 * 59.99797 * 25 23 22 41 41 H 1.08998 * 109.46975 * 180.02562 * 25 23 22 42 42 H 1.08995 * 109.47063 * 300.00136 * 25 23 22 43 43 H 1.08997 * 109.46871 * 59.99527 * 26 23 22 44 44 H 1.09001 * 109.46860 * 179.97438 * 26 23 22 45 45 H 1.09000 * 109.46677 * 299.99790 * 26 23 22 46 46 H 1.08998 * 113.46617 * 87.65962 * 27 19 18 47 47 H 1.09006 * 113.46415 * 218.03908 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.8634 -1.0774 5 6 3.3638 -2.1939 -0.8385 6 1 3.9460 -2.7755 -1.5379 7 6 2.8471 -2.7937 0.3033 8 7 1.9773 -2.1490 1.0480 9 14 3.3889 -4.5168 0.7797 10 1 4.3676 -5.0213 -0.2167 11 1 4.0216 -4.4832 2.1227 12 1 2.2074 -5.4161 0.8115 13 6 3.3591 -0.3504 -2.3033 14 8 3.0723 0.8042 -2.5393 15 6 3.9665 -1.2114 -3.3808 16 6 3.9713 -0.4441 -4.7044 17 8 2.6965 0.1023 -5.0488 18 6 4.6727 -1.1788 -5.8553 19 7 5.2485 0.1120 -6.2616 20 6 5.6839 0.6610 -7.4130 21 8 5.6397 0.0220 -8.4455 22 8 6.1689 1.9169 -7.4188 23 6 6.6205 2.4434 -8.6944 24 6 5.4549 2.4481 -9.6856 25 6 7.1331 3.8723 -8.5038 26 6 7.7488 1.5646 -9.2381 27 6 5.1408 0.5399 -4.8587 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0095 -0.3718 0.9577 30 1 3.0089 1.0165 -0.1561 31 1 1.6715 -2.5371 1.8826 32 1 3.3793 -2.1230 -3.4914 33 1 4.9894 -1.4691 -3.1065 34 1 2.2139 0.4771 -4.2993 35 1 3.9825 -1.5963 -6.5884 36 1 5.4178 -1.9000 -5.5196 37 1 4.6511 3.0742 -9.2982 38 1 5.7938 2.8437 -10.6430 39 1 5.0894 1.4303 -9.8214 40 1 7.9633 3.8693 -7.7975 41 1 7.4716 4.2676 -9.4615 42 1 6.3290 4.4981 -8.1166 43 1 7.3832 0.5468 -9.3739 44 1 8.0874 1.9595 -10.1959 45 1 8.5791 1.5613 -8.5320 46 1 6.0105 0.2767 -4.2567 47 1 4.8496 1.5841 -4.7445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337895021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:18 Heat of formation + Delta-G solvation = -48.720614 kcal Electronic energy + Delta-G solvation = -30162.154493 eV Core-core repulsion = 25928.557934 eV Total energy + Delta-G solvation = -4233.596559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91563 -39.89802 -38.51418 -36.63361 -35.47638 -34.57498 -33.98142 -31.99144 -31.70984 -30.55762 -27.82741 -27.53218 -27.47796 -26.18782 -25.98992 -24.57060 -22.12757 -20.36011 -19.47835 -19.20672 -18.06611 -17.56498 -16.83963 -16.73882 -16.45326 -16.15207 -15.80773 -15.21026 -14.85094 -14.67748 -14.53995 -14.36743 -14.07532 -13.84235 -13.58955 -13.40118 -12.96457 -12.63102 -12.59709 -12.44955 -12.28508 -12.10415 -12.00353 -11.97539 -11.63076 -11.54648 -11.52412 -11.41941 -11.19951 -11.18679 -10.83293 -10.54358 -10.50152 -10.39946 -10.02085 -9.62113 -9.54005 -9.37322 -8.76559 -8.68774 -8.60917 -8.12147 -6.48373 -4.16240 2.04063 2.95230 2.97581 3.10187 3.13136 3.52323 3.75941 3.80667 4.01548 4.21398 4.26808 4.55061 4.60973 4.64883 4.78831 4.79648 4.87726 5.17910 5.20702 5.28603 5.32440 5.40327 5.46539 5.54784 5.62180 5.66034 5.66863 5.72430 5.74357 5.84962 5.90929 5.92110 6.02442 6.17249 6.17584 6.22803 6.24995 6.52649 6.59250 6.88930 7.15332 7.17729 7.46031 7.80839 8.07751 8.17574 8.42124 8.83578 8.96288 9.20122 9.59738 10.45067 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.002581 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.912440 B =10845.697630 C =11560.431367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.089 4.089 3 C 0.240 3.760 4 N -0.430 5.430 5 C -0.342 4.342 6 H 0.105 0.895 7 C 0.037 3.963 8 N -0.855 5.855 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.454 3.546 14 O -0.607 6.607 15 C -0.138 4.138 16 C 0.127 3.873 17 O -0.540 6.540 18 C 0.135 3.865 19 N -0.627 5.627 20 C 0.684 3.316 21 O -0.575 6.575 22 O -0.360 6.360 23 C 0.135 3.865 24 C -0.183 4.183 25 C -0.140 4.140 26 C -0.182 4.182 27 C 0.084 3.916 28 H 0.196 0.804 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.271 0.729 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.397 0.603 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 4.564 -10.514 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.091 4.091 3 C 0.118 3.882 4 N -0.146 5.146 5 C -0.470 4.470 6 H 0.122 0.878 7 C -0.169 4.169 8 N -0.492 5.492 9 Si 0.751 3.249 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.243 3.757 14 O -0.496 6.496 15 C -0.179 4.179 16 C 0.083 3.917 17 O -0.353 6.353 18 C 0.014 3.986 19 N -0.368 5.368 20 C 0.441 3.559 21 O -0.466 6.466 22 O -0.275 6.275 23 C 0.098 3.902 24 C -0.240 4.240 25 C -0.197 4.197 26 C -0.239 4.239 27 C -0.039 4.039 28 H 0.213 0.787 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.575 4.820 -11.587 15.199 hybrid contribution -0.160 -0.886 0.999 1.345 sum 8.415 3.934 -10.588 14.085 Atomic orbital electron populations 1.24163 0.95326 1.06482 1.04020 1.22985 0.94172 0.94979 0.96945 1.18251 0.84400 0.92688 0.92866 1.43750 1.54653 1.08972 1.07217 1.19768 1.33131 0.84351 1.09700 0.87782 1.25333 0.94411 0.99983 0.97130 1.70051 1.26628 1.38971 1.13591 0.85892 0.78552 0.81594 0.78815 1.19170 1.20467 1.20665 1.19966 0.84518 0.87996 0.83226 1.90471 1.59321 1.19070 1.80779 1.21891 1.03647 1.00162 0.92176 1.21836 0.84842 0.92768 0.92234 1.86278 1.28955 1.79324 1.40739 1.23183 0.95026 0.85727 0.94703 1.47918 1.64401 1.18290 1.06149 1.17156 0.76236 0.80259 0.82276 1.90867 1.61501 1.63645 1.30553 1.86327 1.75171 1.28838 1.37151 1.22051 0.94288 0.93590 0.80293 1.22516 0.97885 1.05066 0.98570 1.21848 1.01959 0.93040 1.02863 1.22511 0.97657 1.02591 1.01189 1.23843 0.98221 1.02557 0.79309 0.78706 0.86894 0.91686 0.91729 0.88017 0.88383 0.74699 0.89323 0.88023 0.92102 0.91327 0.89362 0.91515 0.90254 0.91408 0.89403 0.91277 0.92260 0.89092 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.13 19.25 29.55 0.57 -5.56 16 2 C -0.09 -2.08 11.31 -37.13 -0.42 -2.50 16 3 C 0.24 5.39 5.14 -6.83 -0.04 5.36 16 4 N -0.43 -9.58 2.58 -117.94 -0.30 -9.88 16 5 C -0.34 -7.63 9.18 -14.93 -0.14 -7.77 16 6 H 0.10 2.12 6.48 -52.49 -0.34 1.78 16 7 C 0.04 0.84 5.18 -17.47 -0.09 0.75 16 8 N -0.86 -20.51 8.55 55.50 0.47 -20.03 16 9 Si 0.93 17.81 29.57 -169.99 -5.03 12.78 16 10 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 11 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 13 C 0.45 9.29 7.25 -10.98 -0.08 9.21 16 14 O -0.61 -13.40 13.54 -13.70 -0.19 -13.58 16 15 C -0.14 -2.23 3.91 -27.88 -0.11 -2.34 16 16 C 0.13 2.00 1.26 -90.04 -0.11 1.89 16 17 O -0.54 -9.97 13.56 -54.48 -0.74 -10.71 16 18 C 0.14 1.90 8.04 -8.49 -0.07 1.83 16 19 N -0.63 -9.96 3.69 -190.84 -0.70 -10.67 16 20 C 0.68 11.50 8.26 54.06 0.45 11.95 16 21 O -0.58 -10.36 12.66 -19.28 -0.24 -10.61 16 22 O -0.36 -5.51 9.91 -40.30 -0.40 -5.91 16 23 C 0.13 1.62 1.13 -90.61 -0.10 1.52 16 24 C -0.18 -2.16 8.37 37.16 0.31 -1.84 16 25 C -0.14 -1.26 8.85 37.16 0.33 -0.94 16 26 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 27 C 0.08 1.27 7.92 -8.44 -0.07 1.20 16 28 H 0.20 3.51 7.80 -54.10 -0.42 3.09 16 29 H 0.11 2.59 6.31 -51.93 -0.33 2.26 16 30 H 0.07 1.40 7.50 -51.93 -0.39 1.01 16 31 H 0.27 6.27 8.32 -40.82 -0.34 5.93 16 32 H 0.10 1.63 7.61 -51.93 -0.39 1.23 16 33 H 0.10 1.36 7.96 -51.93 -0.41 0.95 16 34 H 0.40 7.66 6.22 45.56 0.28 7.94 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.18 5.88 -51.93 -0.31 0.88 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.18 8.00 -51.93 -0.42 0.77 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -28.82 388.13 -6.93 -35.74 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -6.39 Total: 15.98 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 0.74 Total: 11.04 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.53 Total: -40.59 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.57 Total: -40.81 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.82 -6.93 -35.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337895021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.979 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds