Wall clock time and date at job start Tue Mar 31 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44169 * 2 1 4 4 C 1.53081 * 109.45405 * 240.05810 * 2 1 3 5 5 C 1.53012 * 109.42015 * 180.82229 * 4 2 1 6 6 C 1.52995 * 109.51236 * 60.47000 * 5 4 2 7 7 C 1.53082 * 109.42576 * 299.53426 * 6 5 4 8 8 C 1.52468 * 109.58094 * 59.13918 * 7 6 5 9 9 N 1.46861 * 110.48582 * 178.67325 * 8 7 6 10 10 C 1.34676 * 106.42347 * 241.45377 * 9 8 7 11 11 O 1.21535 * 123.78907 * 179.97438 * 10 9 8 12 12 N 1.33869 * 112.42054 * 359.97438 * 10 9 8 13 13 C 1.46501 * 124.19425 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47090 * 90.02685 * 13 12 10 15 15 O 1.20822 * 119.99880 * 0.02562 * 14 13 12 16 16 O 1.34222 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.45200 * 117.00098 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47574 * 89.99780 * 23 21 19 25 25 H 1.48500 * 109.47346 * 209.99892 * 23 21 19 26 26 H 1.48499 * 109.47067 * 329.99541 * 23 21 19 27 27 C 1.34916 * 111.60620 * 0.23675 * 12 10 9 28 28 O 1.21242 * 127.25276 * 179.76648 * 27 12 10 29 29 H 1.09000 * 109.46858 * 300.05271 * 1 2 3 30 30 H 1.08999 * 109.46432 * 60.05335 * 1 2 3 31 31 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.48359 * 60.83235 * 4 2 1 33 33 H 1.09005 * 109.47965 * 300.79940 * 4 2 1 34 34 H 1.09005 * 109.46263 * 300.45815 * 5 4 2 35 35 H 1.09003 * 109.45842 * 180.48502 * 5 4 2 36 36 H 1.09001 * 109.48338 * 179.54650 * 6 5 4 37 37 H 1.09004 * 109.48190 * 59.51777 * 6 5 4 38 38 H 1.08997 * 109.44917 * 299.10518 * 7 6 5 39 39 H 1.09002 * 109.43575 * 179.16171 * 7 6 5 40 40 H 0.96997 * 126.79338 * 61.45141 * 9 8 7 41 41 H 1.08998 * 109.47332 * 330.02820 * 13 12 10 42 42 H 1.08994 * 109.46881 * 210.02752 * 13 12 10 43 43 H 1.09000 * 109.47147 * 60.00338 * 17 16 14 44 44 H 1.09001 * 109.47321 * 299.99849 * 17 16 14 45 45 H 1.08993 * 109.46955 * 300.00258 * 18 17 16 46 46 H 1.09000 * 109.47050 * 60.00087 * 18 17 16 47 47 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0398 -0.7204 -1.2508 5 6 3.5698 -0.7380 -1.2397 6 6 4.0634 -1.4822 0.0026 7 6 3.5617 -0.7650 1.2586 8 6 2.0378 -0.7178 1.2457 9 7 1.5337 -0.0609 2.4587 10 6 0.7880 -0.9768 3.1058 11 8 0.2175 -0.7632 4.1575 12 7 0.7457 -2.1490 2.4606 13 6 0.0101 -3.3238 2.9349 14 6 -1.3928 -3.2937 2.3852 15 8 -1.7421 -2.3845 1.6703 16 8 -2.2539 -4.2774 2.6891 17 6 -3.5881 -4.1836 2.1239 18 6 -4.4202 -5.3844 2.5785 19 6 -5.8047 -5.2873 1.9914 20 1 -6.0652 -4.4524 1.3578 21 6 -6.7392 -6.2638 2.2640 22 7 -6.4221 -7.2803 3.0360 23 14 -8.4551 -6.1438 1.5358 24 1 -8.4840 -6.8328 0.2205 25 1 -9.4286 -6.7882 2.4536 26 1 -8.8170 -4.7151 1.3542 27 6 1.4692 -2.1159 1.3223 28 8 1.6282 -3.0174 0.5273 29 1 -0.3633 0.5147 0.8895 30 1 -0.3632 0.5130 -0.8905 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 -0.1973 -2.1402 33 1 1.6648 -1.7439 -1.2590 34 1 3.9447 0.2855 -1.2228 35 1 3.9337 -1.2433 -2.1344 36 1 5.1532 -1.5013 0.0059 37 1 3.6818 -2.5032 -0.0097 38 1 3.9562 0.2509 1.2784 39 1 3.9008 -1.3034 2.1436 40 1 1.7041 0.8521 2.7385 41 1 -0.0262 -3.3144 4.0242 42 1 0.5138 -4.2290 2.5959 43 1 -3.5222 -4.1778 1.0359 44 1 -4.0629 -3.2633 2.4642 45 1 -3.9455 -6.3049 2.2387 46 1 -4.4860 -5.3899 3.6665 47 1 -7.0793 -7.9674 3.2275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021730084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:08 Heat of formation + Delta-G solvation = -146.036208 kcal Electronic energy + Delta-G solvation = -30805.089243 eV Core-core repulsion = 26567.272763 eV Total energy + Delta-G solvation = -4237.816480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.20140 -40.05174 -39.29288 -38.11050 -36.35535 -36.04555 -34.52690 -33.36159 -33.05013 -30.54811 -30.08249 -29.09235 -26.80959 -25.10173 -24.31583 -22.84591 -22.43818 -21.69089 -21.08119 -20.54725 -19.57590 -18.30351 -17.97429 -16.93649 -16.84193 -16.16681 -16.11141 -16.05750 -15.72943 -15.33233 -15.21732 -14.96889 -14.58992 -14.49983 -13.90246 -13.83017 -13.69928 -13.48413 -13.24411 -12.77419 -12.55364 -12.42157 -12.36891 -12.14944 -12.00856 -11.44528 -11.35618 -11.24703 -11.08662 -11.08090 -10.93783 -10.79765 -10.77427 -10.66365 -10.60844 -10.10028 -10.01340 -9.69389 -9.68501 -9.57450 -9.30201 -8.44741 -6.10786 -4.15244 1.37385 1.75428 2.41231 2.63478 2.79264 3.22656 3.28612 3.34821 3.39443 3.56199 3.98739 4.10907 4.38519 4.50247 4.59626 4.63925 4.66720 4.87210 4.91387 4.97910 4.98747 5.02352 5.15241 5.23652 5.25854 5.31113 5.35721 5.41722 5.55717 5.62522 5.68879 5.79471 5.80767 5.88267 6.03443 6.06658 6.06974 6.14295 6.47469 6.60874 6.74141 6.89201 7.11194 7.53932 7.61193 7.83096 7.86735 8.08352 8.23027 8.90088 9.49168 11.00762 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020265 B = 0.002494 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.368593 B =11224.583295 C =11614.510944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.090 0.910 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.129 4.129 7 C -0.111 4.111 8 C 0.130 3.870 9 N -0.718 5.718 10 C 0.710 3.290 11 O -0.536 6.536 12 N -0.565 5.565 13 C 0.124 3.876 14 C 0.444 3.556 15 O -0.506 6.506 16 O -0.351 6.351 17 C 0.077 3.923 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.540 3.460 28 O -0.452 6.452 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.439 0.561 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.492 15.539 -5.033 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.154 4.154 6 C -0.166 4.166 7 C -0.150 4.150 8 C 0.039 3.961 9 N -0.382 5.382 10 C 0.410 3.590 11 O -0.409 6.409 12 N -0.312 5.312 13 C 0.001 3.999 14 C 0.285 3.715 15 O -0.395 6.395 16 O -0.267 6.267 17 C 0.005 3.995 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C 0.328 3.672 28 O -0.320 6.320 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.284 0.716 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.970 15.137 -4.999 29.624 hybrid contribution -1.131 0.523 -0.237 1.269 sum 23.839 15.660 -5.236 28.999 Atomic orbital electron populations 1.21940 0.93270 1.03650 1.02541 1.21257 0.97086 0.99658 0.92028 0.89224 1.21767 0.95741 1.02382 0.96354 1.21512 0.95433 1.00429 0.98036 1.21688 1.00788 1.00965 0.93199 1.21675 0.90241 1.03046 1.00025 1.21158 0.96672 0.90350 0.87909 1.45490 1.53717 1.15161 1.23800 1.15802 0.79503 0.80364 0.83298 1.91041 1.48401 1.79918 1.21502 1.46028 1.47028 1.13702 1.24406 1.21037 0.87871 0.87990 1.03023 1.23529 0.88380 0.80758 0.78873 1.90634 1.78369 1.35334 1.35166 1.86501 1.25675 1.46049 1.68453 1.23704 0.75744 1.02614 0.97456 1.19182 0.92891 0.91153 0.98019 1.20965 0.95772 1.08681 1.31062 0.92281 1.24980 0.99049 0.95093 0.95005 1.69972 1.35103 1.11263 1.36470 0.86465 0.83500 0.78373 0.78941 1.20463 1.21019 1.19729 1.20617 0.77142 0.89733 0.79752 1.90766 1.58008 1.42069 1.41197 0.92159 0.91656 0.91551 0.90942 0.89928 0.91955 0.91357 0.91015 0.89938 0.89672 0.90766 0.71591 0.84336 0.84498 0.92215 0.92186 0.95262 0.95233 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.65 37.16 0.32 -1.36 16 2 C -0.08 -0.64 2.29 -90.85 -0.21 -0.84 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.97 4.96 -26.68 -0.13 -1.10 16 5 C -0.12 -0.69 5.91 -26.73 -0.16 -0.85 16 6 C -0.13 -0.80 5.67 -26.69 -0.15 -0.96 16 7 C -0.11 -0.66 5.09 -26.96 -0.14 -0.80 16 8 C 0.13 1.09 0.76 -133.10 -0.10 0.99 16 9 N -0.72 -6.16 5.12 -53.87 -0.28 -6.44 16 10 C 0.71 9.04 8.54 -87.82 -0.75 8.29 16 11 O -0.54 -8.64 17.49 5.34 0.09 -8.55 16 12 N -0.56 -7.14 2.10 -122.10 -0.26 -7.40 16 13 C 0.12 1.59 6.30 -5.19 -0.03 1.56 16 14 C 0.44 7.85 8.03 36.01 0.29 8.13 16 15 O -0.51 -10.05 15.49 -18.75 -0.29 -10.34 16 16 O -0.35 -7.03 10.22 -39.24 -0.40 -7.43 16 17 C 0.08 1.74 5.40 37.16 0.20 1.94 16 18 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 19 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 20 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 23 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.54 6.31 5.13 -10.71 -0.05 6.25 16 28 O -0.45 -6.00 13.84 5.59 0.08 -5.93 16 29 H 0.06 0.69 7.61 -51.93 -0.40 0.30 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.93 6.46 -51.93 -0.34 0.60 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.86 6.13 -51.93 -0.32 0.54 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.69 6.09 -51.93 -0.32 0.38 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.44 2.57 8.96 -40.82 -0.37 2.20 16 41 H 0.14 1.54 7.86 -51.93 -0.41 1.13 16 42 H 0.14 1.42 8.01 -51.93 -0.42 1.00 16 43 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 44 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -34.62 379.91 -8.25 -42.87 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.17 Total: -1.44 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.47 Total: 8.13 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.20 Total: -39.61 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.52 Total: -32.24 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.62 -8.25 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.164 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds