Wall clock time and date at job start Tue Mar 31 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44169 * 2 1 4 4 C 1.53081 * 109.45405 * 240.05810 * 2 1 3 5 5 C 1.53012 * 109.42015 * 180.82229 * 4 2 1 6 6 C 1.52995 * 109.51236 * 60.47000 * 5 4 2 7 7 C 1.53082 * 109.42576 * 299.53426 * 6 5 4 8 8 C 1.52468 * 109.58094 * 59.13918 * 7 6 5 9 9 N 1.46861 * 110.48582 * 178.67325 * 8 7 6 10 10 C 1.34676 * 106.42347 * 241.45377 * 9 8 7 11 11 O 1.21535 * 123.78907 * 179.97438 * 10 9 8 12 12 N 1.33869 * 112.42054 * 359.97438 * 10 9 8 13 13 C 1.46501 * 124.19425 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47090 * 90.02685 * 13 12 10 15 15 O 1.20822 * 119.99880 * 0.02562 * 14 13 12 16 16 O 1.34222 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.45200 * 117.00098 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47574 * 89.99780 * 23 21 19 25 25 H 1.48500 * 109.47346 * 209.99892 * 23 21 19 26 26 H 1.48499 * 109.47067 * 329.99541 * 23 21 19 27 27 C 1.34916 * 111.60620 * 0.23675 * 12 10 9 28 28 O 1.21242 * 127.25276 * 179.76648 * 27 12 10 29 29 H 1.09000 * 109.46858 * 300.05271 * 1 2 3 30 30 H 1.08999 * 109.46432 * 60.05335 * 1 2 3 31 31 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.48359 * 60.83235 * 4 2 1 33 33 H 1.09005 * 109.47965 * 300.79940 * 4 2 1 34 34 H 1.09005 * 109.46263 * 300.45815 * 5 4 2 35 35 H 1.09003 * 109.45842 * 180.48502 * 5 4 2 36 36 H 1.09001 * 109.48338 * 179.54650 * 6 5 4 37 37 H 1.09004 * 109.48190 * 59.51777 * 6 5 4 38 38 H 1.08997 * 109.44917 * 299.10518 * 7 6 5 39 39 H 1.09002 * 109.43575 * 179.16171 * 7 6 5 40 40 H 0.96997 * 126.79338 * 61.45141 * 9 8 7 41 41 H 1.08998 * 109.47332 * 330.02820 * 13 12 10 42 42 H 1.08994 * 109.46881 * 210.02752 * 13 12 10 43 43 H 1.09000 * 109.47147 * 60.00338 * 17 16 14 44 44 H 1.09001 * 109.47321 * 299.99849 * 17 16 14 45 45 H 1.08993 * 109.46955 * 300.00258 * 18 17 16 46 46 H 1.09000 * 109.47050 * 60.00087 * 18 17 16 47 47 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0398 -0.7204 -1.2508 5 6 3.5698 -0.7380 -1.2397 6 6 4.0634 -1.4822 0.0026 7 6 3.5617 -0.7650 1.2586 8 6 2.0378 -0.7178 1.2457 9 7 1.5337 -0.0609 2.4587 10 6 0.7880 -0.9768 3.1058 11 8 0.2175 -0.7632 4.1575 12 7 0.7457 -2.1490 2.4606 13 6 0.0101 -3.3238 2.9349 14 6 -1.3928 -3.2937 2.3852 15 8 -1.7421 -2.3845 1.6703 16 8 -2.2539 -4.2774 2.6891 17 6 -3.5881 -4.1836 2.1239 18 6 -4.4202 -5.3844 2.5785 19 6 -5.8047 -5.2873 1.9914 20 1 -6.0652 -4.4524 1.3578 21 6 -6.7392 -6.2638 2.2640 22 7 -6.4221 -7.2803 3.0360 23 14 -8.4551 -6.1438 1.5358 24 1 -8.4840 -6.8328 0.2205 25 1 -9.4286 -6.7882 2.4536 26 1 -8.8170 -4.7151 1.3542 27 6 1.4692 -2.1159 1.3223 28 8 1.6282 -3.0174 0.5273 29 1 -0.3633 0.5147 0.8895 30 1 -0.3632 0.5130 -0.8905 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 -0.1973 -2.1402 33 1 1.6648 -1.7439 -1.2590 34 1 3.9447 0.2855 -1.2228 35 1 3.9337 -1.2433 -2.1344 36 1 5.1532 -1.5013 0.0059 37 1 3.6818 -2.5032 -0.0097 38 1 3.9562 0.2509 1.2784 39 1 3.9008 -1.3034 2.1436 40 1 1.7041 0.8521 2.7385 41 1 -0.0262 -3.3144 4.0242 42 1 0.5138 -4.2290 2.5959 43 1 -3.5222 -4.1778 1.0359 44 1 -4.0629 -3.2633 2.4642 45 1 -3.9455 -6.3049 2.2387 46 1 -4.4860 -5.3899 3.6665 47 1 -7.0793 -7.9674 3.2275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021730084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:07 Heat of formation + Delta-G solvation = -168.194134 kcal Electronic energy + Delta-G solvation = -30806.050083 eV Core-core repulsion = 26567.272763 eV Total energy + Delta-G solvation = -4238.777320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.08563 -41.53310 -40.23616 -38.96931 -37.86216 -37.11917 -35.51177 -35.39621 -33.68817 -32.50151 -30.72609 -30.32650 -27.57723 -27.06345 -25.17622 -24.01836 -23.28498 -22.82791 -22.30031 -21.85272 -20.34622 -19.38509 -19.21776 -18.48243 -17.98965 -17.87047 -17.54959 -17.07549 -16.69552 -16.56869 -16.39425 -15.97946 -15.80861 -15.36029 -15.20105 -14.80484 -14.61494 -14.41662 -14.37219 -14.08476 -13.88505 -13.71338 -13.20860 -13.12731 -13.09741 -12.84040 -12.75836 -12.65003 -12.62420 -12.24065 -12.18311 -11.98334 -11.82058 -11.73421 -11.57030 -11.53616 -11.49694 -11.28548 -11.04199 -10.84301 -10.64239 -10.42521 -8.29942 -6.43513 0.45734 0.76407 0.96515 1.38566 1.40866 1.49792 1.54311 1.97314 2.05719 2.37867 2.75490 3.04393 3.31354 3.48437 3.50588 3.70036 3.88126 4.01738 4.07735 4.09337 4.14583 4.16632 4.20206 4.28466 4.35567 4.44625 4.48589 4.61047 4.62295 4.73605 4.82625 4.91992 5.02429 5.12099 5.17301 5.19664 5.26809 5.32407 5.36253 5.42011 5.44408 5.54849 5.69366 5.71826 5.84566 6.02445 6.23383 6.51965 6.69649 6.96916 7.26264 8.82779 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020265 B = 0.002494 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.368593 B =11224.583295 C =11614.510944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 H 0.128 0.872 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.106 4.106 8 C 0.136 3.864 9 N -0.694 5.694 10 C 0.705 3.295 11 O -0.576 6.576 12 N -0.572 5.572 13 C 0.128 3.872 14 C 0.439 3.561 15 O -0.530 6.530 16 O -0.357 6.357 17 C 0.093 3.907 18 C 0.032 3.968 19 C -0.552 4.552 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.974 3.026 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.264 1.264 27 C 0.531 3.469 28 O -0.473 6.473 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.454 0.546 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.204 17.659 -5.971 32.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.094 4.094 3 H 0.146 0.854 4 C -0.162 4.162 5 C -0.150 4.150 6 C -0.167 4.167 7 C -0.144 4.144 8 C 0.045 3.955 9 N -0.359 5.359 10 C 0.405 3.595 11 O -0.452 6.452 12 N -0.318 5.318 13 C 0.005 3.995 14 C 0.282 3.718 15 O -0.419 6.419 16 O -0.273 6.273 17 C 0.020 3.980 18 C -0.006 4.006 19 C -0.590 4.590 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.565 5.565 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.189 1.189 27 C 0.320 3.680 28 O -0.342 6.342 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.302 0.698 41 H 0.176 0.824 42 H 0.181 0.819 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 26.735 17.293 -5.962 32.394 hybrid contribution -1.608 -0.145 0.019 1.614 sum 25.127 17.148 -5.943 30.996 Atomic orbital electron populations 1.21898 0.95709 1.00964 1.02549 1.21316 0.94814 1.01580 0.91675 0.85442 1.21749 0.97411 1.00463 0.96616 1.21511 0.93594 1.01925 0.97922 1.21688 1.01952 0.99507 0.93515 1.21749 0.87564 1.05124 0.99980 1.21331 0.98432 0.87945 0.87763 1.45412 1.52176 1.15200 1.23087 1.15982 0.79627 0.80823 0.83028 1.91013 1.50257 1.80601 1.23290 1.46195 1.46903 1.13739 1.24981 1.21220 0.84860 0.89530 1.03937 1.24531 0.89508 0.79562 0.78234 1.90624 1.78995 1.36029 1.36283 1.86487 1.24871 1.47343 1.68600 1.23193 0.76992 1.00589 0.97217 1.18985 0.93247 0.91855 0.96479 1.21350 0.96890 1.09179 1.31562 0.91863 1.25962 1.03610 0.94465 0.95174 1.70090 1.36822 1.12038 1.37524 0.85318 0.77810 0.78806 0.78347 1.19424 1.20212 1.18852 1.21299 0.76734 0.91046 0.78955 1.90759 1.58680 1.43218 1.41561 0.93201 0.90595 0.95515 0.90009 0.93278 0.89317 0.91288 0.88947 0.92722 0.86211 0.90563 0.69762 0.82406 0.81937 0.92253 0.92433 0.97259 0.97349 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.65 71.98 0.62 -2.61 16 2 C -0.07 -1.00 2.29 -10.94 -0.03 -1.03 16 3 H 0.13 0.85 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.73 4.96 30.63 0.15 -1.57 16 5 C -0.11 -0.99 5.91 30.60 0.18 -0.81 16 6 C -0.13 -1.26 5.67 30.62 0.17 -1.08 16 7 C -0.11 -0.89 5.09 30.45 0.16 -0.73 16 8 C 0.14 1.99 0.76 2.58 0.00 2.00 16 9 N -0.69 -10.57 5.12 -442.69 -2.27 -12.84 16 10 C 0.70 17.56 8.54 179.37 1.53 19.09 16 11 O -0.58 -18.57 17.49 -3.83 -0.07 -18.64 16 12 N -0.57 -14.39 2.10 -777.33 -1.63 -16.02 16 13 C 0.13 3.30 6.30 85.63 0.54 3.84 16 14 C 0.44 15.96 8.03 71.24 0.57 16.54 16 15 O -0.53 -21.77 15.49 21.98 0.34 -21.43 16 16 O -0.36 -14.78 10.22 -51.34 -0.52 -15.31 16 17 C 0.09 4.37 5.40 71.98 0.39 4.75 16 18 C 0.03 1.74 5.35 29.85 0.16 1.90 16 19 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 20 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 23 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.53 12.23 5.13 87.77 0.45 12.68 16 28 O -0.47 -12.81 13.84 -2.91 -0.04 -12.85 16 29 H 0.05 1.12 7.61 -2.39 -0.02 1.11 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 0.77 6.46 -2.39 -0.02 0.75 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.03 6.13 -2.38 -0.01 1.02 16 34 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.87 6.09 -2.38 -0.01 0.85 16 38 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 40 H 0.45 4.04 8.96 -92.71 -0.83 3.21 16 41 H 0.16 3.48 7.86 -2.39 -0.02 3.46 16 42 H 0.16 3.32 8.01 -2.39 -0.02 3.30 16 43 H 0.06 2.75 8.13 -2.39 -0.02 2.73 16 44 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -78.34 379.91 3.88 -74.46 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.16 Total: 10.05 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 5.60 Total: 22.06 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.61 Total: -84.67 kcal Atomic # 8 Polarization: -67.94 SS G_CDS: -0.29 Total: -68.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -78.34 3.88 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.732 kcal (2) G-P(sol) polarization free energy of solvation -78.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds