Wall clock time and date at job start Tue Mar 31 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08999 * 109.43709 * 2 1 4 4 C 1.53082 * 109.45402 * 119.94907 * 2 1 3 5 5 C 1.53009 * 109.42002 * 179.18020 * 4 2 1 6 6 C 1.53004 * 109.51965 * 299.54651 * 5 4 2 7 7 C 1.53078 * 109.42309 * 60.45400 * 6 5 4 8 8 C 1.52468 * 109.45266 * 240.04722 * 2 1 3 9 9 N 1.46845 * 110.52735 * 304.17639 * 8 2 1 10 10 C 1.34674 * 106.42260 * 118.53286 * 9 8 2 11 11 O 1.21535 * 123.78950 * 180.02562 * 10 9 8 12 12 N 1.33867 * 112.42515 * 359.76127 * 10 9 8 13 13 C 1.46498 * 124.20046 * 180.28915 * 12 10 9 14 14 C 1.50700 * 109.47279 * 270.13741 * 13 12 10 15 15 O 1.20820 * 119.99859 * 359.97438 * 14 13 12 16 16 O 1.34226 * 119.99863 * 179.97438 * 14 13 12 17 17 C 1.45200 * 117.00018 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47443 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47465 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99558 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00385 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46959 * 59.99880 * 23 21 19 25 25 H 1.48501 * 109.47178 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47239 * 300.00121 * 23 21 19 27 27 C 1.34916 * 111.60775 * 0.41115 * 12 10 9 28 28 O 1.21233 * 127.26002 * 179.88564 * 27 12 10 29 29 H 1.08992 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46847 * 299.95327 * 1 2 3 31 31 H 1.08999 * 109.46635 * 59.95670 * 1 2 3 32 32 H 1.08998 * 109.48316 * 59.19236 * 4 2 1 33 33 H 1.09006 * 109.47596 * 299.16554 * 4 2 1 34 34 H 1.08998 * 109.46259 * 179.52749 * 5 4 2 35 35 H 1.09003 * 109.45928 * 59.56248 * 5 4 2 36 36 H 1.09005 * 109.47885 * 300.46608 * 6 5 4 37 37 H 1.08999 * 109.47409 * 180.44421 * 6 5 4 38 38 H 1.08993 * 109.45521 * 180.82034 * 7 6 5 39 39 H 1.09002 * 109.45191 * 60.87256 * 7 6 5 40 40 H 0.96994 * 126.78787 * 298.53341 * 9 8 2 41 41 H 1.09001 * 109.47107 * 30.13824 * 13 12 10 42 42 H 1.09001 * 109.47242 * 150.13552 * 13 12 10 43 43 H 1.09001 * 109.47119 * 300.00040 * 17 16 14 44 44 H 1.09001 * 109.47218 * 59.99393 * 17 16 14 45 45 H 1.09001 * 109.47008 * 300.00123 * 18 17 16 46 46 H 1.09009 * 109.46904 * 59.99893 * 18 17 16 47 47 H 0.97000 * 120.00362 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0400 -0.7206 1.2507 5 6 3.5699 -0.7381 1.2396 6 6 4.0637 -1.4817 -0.0030 7 6 3.5619 -0.7642 -1.2586 8 6 2.0379 -0.7178 -1.2456 9 7 1.4809 -2.0744 -1.3212 10 6 0.7583 -2.1267 -2.4564 11 8 0.1556 -3.1141 -2.8291 12 7 0.7736 -0.9672 -3.1253 13 6 0.0690 -0.7361 -4.3888 14 6 0.9740 -1.0900 -5.5407 15 8 2.0928 -1.4933 -5.3281 16 8 0.5369 -0.9570 -6.8028 17 6 1.4627 -1.3159 -7.8623 18 6 0.7920 -1.1006 -9.2204 19 6 1.7532 -1.4725 -10.3200 20 1 2.7432 -1.8274 -10.0746 21 6 1.3682 -1.3606 -11.6391 22 7 0.1624 -0.9290 -11.9379 23 14 2.5593 -1.8223 -13.0021 24 1 2.9444 -3.2496 -12.8604 25 1 1.9078 -1.6143 -14.3203 26 1 3.7722 -0.9707 -12.9089 27 6 1.5207 -0.0387 -2.4930 28 8 1.7290 1.1018 -2.8477 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5131 0.8904 31 1 -0.3632 0.5145 -0.8896 32 1 1.6648 -1.7439 1.2590 33 1 1.6888 -0.1974 2.1401 34 1 3.9338 -1.2436 2.1341 35 1 3.9446 0.2854 1.2233 36 1 3.6825 -2.5029 0.0090 37 1 5.1535 -1.5006 -0.0061 38 1 3.9012 -1.3017 -2.1440 39 1 3.9558 0.2520 -1.2779 40 1 1.6084 -2.7912 -0.6802 41 1 -0.8254 -1.3581 -4.4250 42 1 -0.2155 0.3137 -4.4594 43 1 2.3535 -0.6914 -7.7934 44 1 1.7449 -2.3637 -7.7588 45 1 -0.0985 -1.7254 -9.2890 46 1 0.5096 -0.0528 -9.3241 47 1 -0.1083 -0.8499 -12.8660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021730089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:11 Heat of formation + Delta-G solvation = -147.623189 kcal Electronic energy + Delta-G solvation = -30392.276908 eV Core-core repulsion = 26154.391612 eV Total energy + Delta-G solvation = -4237.885297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.18313 -40.07206 -39.07270 -38.60614 -36.34440 -35.89564 -34.37172 -33.35787 -33.22266 -30.52729 -30.47128 -29.04753 -27.03905 -25.10013 -24.38166 -23.07649 -22.41093 -21.61716 -20.84375 -20.51121 -19.89945 -18.23622 -17.95156 -16.99574 -16.73302 -16.22382 -16.11256 -16.06895 -15.88893 -15.37446 -15.29668 -14.98333 -14.71544 -14.50895 -14.43268 -13.71732 -13.69786 -13.53495 -13.32730 -12.77587 -12.66370 -12.42670 -12.35850 -12.32851 -12.16223 -11.54808 -11.43211 -11.24804 -11.12573 -11.09459 -10.97957 -10.92668 -10.82801 -10.75847 -10.63259 -10.23479 -10.04946 -9.72333 -9.68174 -9.57761 -9.31179 -8.44005 -6.10098 -4.14692 1.36303 1.75696 2.40779 2.63557 2.79543 3.22604 3.30642 3.34563 3.38589 3.55923 3.88818 4.04432 4.36152 4.38913 4.44801 4.55350 4.63842 4.74777 4.83178 4.88601 4.91087 5.01757 5.05329 5.14265 5.20805 5.26354 5.26416 5.33087 5.41791 5.46172 5.52792 5.60802 5.62685 5.71533 5.72465 5.86256 6.04863 6.06909 6.47525 6.61115 6.73940 6.88298 7.08334 7.53983 7.61579 7.83232 7.87032 8.07907 8.23419 8.90303 9.49604 11.01343 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.002271 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.504715 B =12325.864930 C =12639.364693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.096 0.904 4 C -0.111 4.111 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.133 3.867 9 N -0.713 5.713 10 C 0.710 3.290 11 O -0.536 6.536 12 N -0.564 5.564 13 C 0.124 3.876 14 C 0.444 3.556 15 O -0.509 6.509 16 O -0.351 6.351 17 C 0.077 3.923 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.538 3.462 28 O -0.457 6.457 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.439 0.561 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 2.025 31.685 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 H 0.114 0.886 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.156 4.156 8 C 0.042 3.958 9 N -0.378 5.378 10 C 0.410 3.590 11 O -0.408 6.408 12 N -0.311 5.311 13 C 0.001 3.999 14 C 0.285 3.715 15 O -0.398 6.398 16 O -0.266 6.266 17 C 0.004 3.996 18 C -0.012 4.012 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C 0.325 3.675 28 O -0.325 6.325 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.284 0.716 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.359 2.069 31.027 31.185 hybrid contribution 0.817 -0.636 -0.750 1.279 sum 3.176 1.433 30.277 30.477 Atomic orbital electron populations 1.21921 0.94055 1.02707 1.02583 1.21289 0.96607 1.00250 0.92279 0.88551 1.21598 0.95750 1.00832 0.96719 1.21617 0.95289 1.01329 0.97962 1.21522 1.01291 0.99194 0.93366 1.21717 0.90207 1.03480 1.00171 1.21085 0.96693 0.83229 0.94760 1.45461 1.53254 1.14360 1.24712 1.15803 0.79907 0.82521 0.80728 1.91041 1.46964 1.32062 1.70781 1.46017 1.48411 1.14125 1.22560 1.21041 0.94382 1.06567 0.77880 1.23544 0.87135 0.75298 0.85513 1.90641 1.20912 1.42324 1.85933 1.86502 1.47775 1.77723 1.14633 1.23713 0.91295 0.99569 0.85004 1.19180 0.96863 0.98759 0.86415 1.20926 0.99705 1.45422 0.90504 0.92330 1.24976 0.95403 0.94935 0.98797 1.69958 1.18172 1.45738 1.18921 0.86523 0.80899 0.79128 0.80689 1.20062 1.21092 1.20062 1.20691 0.76743 0.85300 0.84771 1.90815 1.56052 1.15680 1.69943 0.91891 0.91306 0.92697 0.91595 0.90759 0.91336 0.91324 0.91659 0.90714 0.90116 0.89203 0.71620 0.84246 0.84477 0.92200 0.92175 0.95219 0.95242 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.64 37.16 0.32 -0.64 16 2 C -0.08 -0.51 2.15 -90.84 -0.20 -0.70 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.44 5.10 -26.68 -0.14 -0.58 16 5 C -0.12 -0.48 5.91 -26.72 -0.16 -0.64 16 6 C -0.12 -0.58 5.81 -26.69 -0.16 -0.74 16 7 C -0.12 -0.89 4.98 -26.96 -0.13 -1.03 16 8 C 0.13 1.11 0.58 -133.10 -0.08 1.03 16 9 N -0.71 -6.11 4.38 -53.87 -0.24 -6.35 16 10 C 0.71 9.02 8.51 -87.82 -0.75 8.27 16 11 O -0.54 -8.61 17.49 5.33 0.09 -8.52 16 12 N -0.56 -7.22 2.10 -122.09 -0.26 -7.47 16 13 C 0.12 1.62 6.30 -5.19 -0.03 1.59 16 14 C 0.44 8.04 8.03 36.01 0.29 8.32 16 15 O -0.51 -10.51 16.18 -18.75 -0.30 -10.82 16 16 O -0.35 -7.12 10.22 -39.25 -0.40 -7.52 16 17 C 0.08 1.75 5.40 37.15 0.20 1.95 16 18 C 0.02 0.66 5.35 -27.89 -0.15 0.51 16 19 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 23 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.54 6.44 5.67 -10.70 -0.06 6.38 16 28 O -0.46 -6.49 17.77 5.60 0.10 -6.39 16 29 H 0.06 0.41 7.54 -51.93 -0.39 0.02 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.42 7.22 -51.93 -0.37 0.04 16 32 H 0.07 0.24 7.35 -51.93 -0.38 -0.14 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 7.35 -51.93 -0.38 -0.08 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.44 2.72 7.74 -40.82 -0.32 2.40 16 41 H 0.14 1.56 7.87 -51.93 -0.41 1.15 16 42 H 0.14 1.45 8.01 -51.93 -0.42 1.03 16 43 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 44 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -35.30 386.09 -8.20 -43.50 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.28 Total: -3.11 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -1.45 Total: 10.05 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.24 Total: -39.63 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.51 Total: -33.24 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.30 -8.20 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.123 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds