Wall clock time and date at job start Tue Mar 31 2020 21:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08999 * 109.43709 * 2 1 4 4 C 1.53082 * 109.45402 * 119.94907 * 2 1 3 5 5 C 1.53009 * 109.42002 * 179.18020 * 4 2 1 6 6 C 1.53004 * 109.51965 * 299.54651 * 5 4 2 7 7 C 1.53078 * 109.42309 * 60.45400 * 6 5 4 8 8 C 1.52468 * 109.45266 * 240.04722 * 2 1 3 9 9 N 1.46845 * 110.52735 * 304.17639 * 8 2 1 10 10 C 1.34674 * 106.42260 * 118.53286 * 9 8 2 11 11 O 1.21535 * 123.78950 * 180.02562 * 10 9 8 12 12 N 1.33867 * 112.42515 * 359.76127 * 10 9 8 13 13 C 1.46498 * 124.20046 * 180.28915 * 12 10 9 14 14 C 1.50700 * 109.47279 * 270.13741 * 13 12 10 15 15 O 1.20820 * 119.99859 * 359.97438 * 14 13 12 16 16 O 1.34226 * 119.99863 * 179.97438 * 14 13 12 17 17 C 1.45200 * 117.00018 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47443 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47465 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99558 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00385 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46959 * 59.99880 * 23 21 19 25 25 H 1.48501 * 109.47178 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47239 * 300.00121 * 23 21 19 27 27 C 1.34916 * 111.60775 * 0.41115 * 12 10 9 28 28 O 1.21233 * 127.26002 * 179.88564 * 27 12 10 29 29 H 1.08992 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46847 * 299.95327 * 1 2 3 31 31 H 1.08999 * 109.46635 * 59.95670 * 1 2 3 32 32 H 1.08998 * 109.48316 * 59.19236 * 4 2 1 33 33 H 1.09006 * 109.47596 * 299.16554 * 4 2 1 34 34 H 1.08998 * 109.46259 * 179.52749 * 5 4 2 35 35 H 1.09003 * 109.45928 * 59.56248 * 5 4 2 36 36 H 1.09005 * 109.47885 * 300.46608 * 6 5 4 37 37 H 1.08999 * 109.47409 * 180.44421 * 6 5 4 38 38 H 1.08993 * 109.45521 * 180.82034 * 7 6 5 39 39 H 1.09002 * 109.45191 * 60.87256 * 7 6 5 40 40 H 0.96994 * 126.78787 * 298.53341 * 9 8 2 41 41 H 1.09001 * 109.47107 * 30.13824 * 13 12 10 42 42 H 1.09001 * 109.47242 * 150.13552 * 13 12 10 43 43 H 1.09001 * 109.47119 * 300.00040 * 17 16 14 44 44 H 1.09001 * 109.47218 * 59.99393 * 17 16 14 45 45 H 1.09001 * 109.47008 * 300.00123 * 18 17 16 46 46 H 1.09009 * 109.46904 * 59.99893 * 18 17 16 47 47 H 0.97000 * 120.00362 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0400 -0.7206 1.2507 5 6 3.5699 -0.7381 1.2396 6 6 4.0637 -1.4817 -0.0030 7 6 3.5619 -0.7642 -1.2586 8 6 2.0379 -0.7178 -1.2456 9 7 1.4809 -2.0744 -1.3212 10 6 0.7583 -2.1267 -2.4564 11 8 0.1556 -3.1141 -2.8291 12 7 0.7736 -0.9672 -3.1253 13 6 0.0690 -0.7361 -4.3888 14 6 0.9740 -1.0900 -5.5407 15 8 2.0928 -1.4933 -5.3281 16 8 0.5369 -0.9570 -6.8028 17 6 1.4627 -1.3159 -7.8623 18 6 0.7920 -1.1006 -9.2204 19 6 1.7532 -1.4725 -10.3200 20 1 2.7432 -1.8274 -10.0746 21 6 1.3682 -1.3606 -11.6391 22 7 0.1624 -0.9290 -11.9379 23 14 2.5593 -1.8223 -13.0021 24 1 2.9444 -3.2496 -12.8604 25 1 1.9078 -1.6143 -14.3203 26 1 3.7722 -0.9707 -12.9089 27 6 1.5207 -0.0387 -2.4930 28 8 1.7290 1.1018 -2.8477 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5131 0.8904 31 1 -0.3632 0.5145 -0.8896 32 1 1.6648 -1.7439 1.2590 33 1 1.6888 -0.1974 2.1401 34 1 3.9338 -1.2436 2.1341 35 1 3.9446 0.2854 1.2233 36 1 3.6825 -2.5029 0.0090 37 1 5.1535 -1.5006 -0.0061 38 1 3.9012 -1.3017 -2.1440 39 1 3.9558 0.2520 -1.2779 40 1 1.6084 -2.7912 -0.6802 41 1 -0.8254 -1.3581 -4.4250 42 1 -0.2155 0.3137 -4.4594 43 1 2.3535 -0.6914 -7.7934 44 1 1.7449 -2.3637 -7.7588 45 1 -0.0985 -1.7254 -9.2890 46 1 0.5096 -0.0528 -9.3241 47 1 -0.1083 -0.8499 -12.8660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021730089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:10 Heat of formation + Delta-G solvation = -169.642342 kcal Electronic energy + Delta-G solvation = -30393.231730 eV Core-core repulsion = 26154.391612 eV Total energy + Delta-G solvation = -4238.840119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.08796 -41.57334 -40.02332 -39.45041 -37.91538 -36.97902 -35.50478 -35.20708 -33.71527 -32.49725 -31.08766 -30.28644 -27.58897 -27.05309 -25.22442 -24.10538 -23.34209 -22.82105 -22.27527 -21.45999 -20.62195 -19.39992 -19.18053 -18.45752 -18.02629 -17.81154 -17.46815 -17.30802 -16.74737 -16.57466 -16.40660 -16.04263 -15.70554 -15.41856 -15.37627 -15.20497 -14.53494 -14.40294 -14.28244 -14.08813 -13.84057 -13.73136 -13.15569 -13.13865 -13.11562 -12.84061 -12.67500 -12.63383 -12.62571 -12.26436 -12.18341 -12.02622 -11.76284 -11.75611 -11.58038 -11.52379 -11.49787 -11.43815 -11.09802 -10.96647 -10.63469 -10.47450 -8.29301 -6.43007 0.39990 0.73954 0.93131 1.38666 1.42930 1.47543 1.52531 1.95112 2.02399 2.38164 2.73354 3.04864 3.26599 3.46070 3.48503 3.68771 3.91367 3.99917 4.02860 4.07008 4.10825 4.14075 4.17440 4.26720 4.39940 4.41659 4.42879 4.61834 4.62112 4.72087 4.84257 4.90690 5.03025 5.10797 5.15115 5.19431 5.25556 5.30588 5.34487 5.42083 5.42377 5.51997 5.68421 5.69128 5.79656 6.02612 6.14741 6.48454 6.69722 6.93725 7.26626 8.83070 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.002271 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.504715 B =12325.864930 C =12639.364693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 H 0.098 0.902 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.117 4.117 8 C 0.140 3.860 9 N -0.690 5.690 10 C 0.706 3.294 11 O -0.573 6.573 12 N -0.570 5.570 13 C 0.128 3.872 14 C 0.441 3.559 15 O -0.537 6.537 16 O -0.356 6.356 17 C 0.092 3.908 18 C 0.032 3.968 19 C -0.553 4.553 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.925 5.925 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.266 1.266 27 C 0.531 3.469 28 O -0.483 6.483 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.451 0.549 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 1.873 33.799 34.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 H 0.117 0.883 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.150 4.150 7 C -0.155 4.155 8 C 0.049 3.951 9 N -0.355 5.355 10 C 0.407 3.593 11 O -0.449 6.449 12 N -0.316 5.316 13 C 0.005 3.995 14 C 0.284 3.716 15 O -0.427 6.427 16 O -0.271 6.271 17 C 0.019 3.981 18 C -0.006 4.006 19 C -0.591 4.591 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.564 5.564 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.190 1.190 27 C 0.320 3.680 28 O -0.353 6.353 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.300 0.700 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.347 1.920 33.206 33.429 hybrid contribution 0.499 -0.547 -1.347 1.537 sum 3.845 1.373 31.859 32.120 Atomic orbital electron populations 1.21930 0.94097 1.02561 1.02628 1.21338 0.96497 1.00292 0.91773 0.88340 1.21616 0.95800 1.01145 0.95890 1.21610 0.95096 1.01436 0.97684 1.21536 1.01695 0.99258 0.92477 1.21742 0.89396 1.03674 1.00723 1.21234 0.97099 0.82587 0.94155 1.45381 1.51660 1.14968 1.23524 1.15956 0.80010 0.81928 0.81442 1.91015 1.48787 1.33204 1.71899 1.46170 1.48609 1.14571 1.22275 1.21255 0.93609 1.08535 0.76102 1.24559 0.87536 0.74105 0.85419 1.90623 1.22414 1.43641 1.86050 1.86489 1.47176 1.78032 1.15421 1.23220 0.91052 0.99394 0.84468 1.18988 0.96148 0.96894 0.88540 1.21319 1.00280 1.45915 0.91572 0.91842 1.25962 0.97279 0.94491 1.01490 1.70079 1.20079 1.46429 1.19803 0.85373 0.78531 0.79182 0.77205 1.19122 1.20284 1.19041 1.21354 0.76066 0.84974 0.85618 1.90794 1.56888 1.16747 1.70853 0.92108 0.89500 0.94458 0.90857 0.89107 0.89771 0.91148 0.91092 0.90102 0.92599 0.89073 0.70029 0.82125 0.81781 0.92195 0.92370 0.97295 0.97204 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.64 71.99 0.62 -1.01 16 2 C -0.08 -0.78 2.15 -10.94 -0.02 -0.81 16 3 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -0.49 5.10 30.62 0.16 -0.34 16 5 C -0.12 -0.55 5.91 30.60 0.18 -0.37 16 6 C -0.11 -0.88 5.81 30.62 0.18 -0.70 16 7 C -0.12 -1.67 4.98 30.45 0.15 -1.52 16 8 C 0.14 2.17 0.58 2.59 0.00 2.17 16 9 N -0.69 -11.05 4.38 -442.69 -1.94 -12.99 16 10 C 0.71 17.68 8.51 179.37 1.53 19.21 16 11 O -0.57 -18.41 17.49 -3.83 -0.07 -18.48 16 12 N -0.57 -14.45 2.10 -777.31 -1.63 -16.08 16 13 C 0.13 3.30 6.30 85.63 0.54 3.84 16 14 C 0.44 16.15 8.03 71.24 0.57 16.73 16 15 O -0.54 -22.60 16.18 21.98 0.36 -22.24 16 16 O -0.36 -14.73 10.22 -51.38 -0.53 -15.25 16 17 C 0.09 4.30 5.40 71.98 0.39 4.69 16 18 C 0.03 1.73 5.35 29.85 0.16 1.89 16 19 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 20 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -55.97 13.29 21.44 0.28 -55.69 16 23 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C 0.53 12.58 5.67 87.78 0.50 13.07 16 28 O -0.48 -13.73 17.77 -2.88 -0.05 -13.78 16 29 H 0.06 0.67 7.54 -2.39 -0.02 0.65 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.53 7.22 -2.39 -0.02 0.51 16 32 H 0.07 0.26 7.35 -2.39 -0.02 0.25 16 33 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.07 0.49 7.35 -2.38 -0.02 0.47 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.45 4.78 7.74 -92.71 -0.72 4.06 16 41 H 0.16 3.48 7.87 -2.39 -0.02 3.46 16 42 H 0.16 3.33 8.01 -2.39 -0.02 3.31 16 43 H 0.06 2.78 8.13 -2.39 -0.02 2.76 16 44 H 0.06 2.72 8.13 -2.39 -0.02 2.71 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.75 386.09 4.37 -73.38 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.27 Total: 8.91 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 5.65 Total: 25.95 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.28 Total: -84.75 kcal Atomic # 8 Polarization: -69.47 SS G_CDS: -0.29 Total: -69.75 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -77.75 4.37 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.265 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds