Wall clock time and date at job start Tue Mar 31 2020 21:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.43009 * 2 1 4 4 C 1.53078 * 109.45078 * 240.05619 * 2 1 3 5 5 C 1.53018 * 109.41685 * 180.81757 * 4 2 1 6 6 C 1.53000 * 109.50512 * 60.47344 * 5 4 2 7 7 C 1.53081 * 109.42735 * 299.52661 * 6 5 4 8 8 C 1.52470 * 109.58003 * 59.14544 * 7 6 5 9 9 N 1.46837 * 110.54342 * 64.29370 * 8 7 6 10 10 C 1.34682 * 106.43080 * 118.51203 * 9 8 7 11 11 O 1.21538 * 123.79146 * 179.97438 * 10 9 8 12 12 N 1.33867 * 112.41920 * 0.02562 * 10 9 8 13 13 C 1.46496 * 124.19716 * 179.97438 * 12 10 9 14 14 C 1.50708 * 109.46855 * 270.02013 * 13 12 10 15 15 O 1.20816 * 120.00047 * 359.97438 * 14 13 12 16 16 O 1.34232 * 119.99676 * 179.97438 * 14 13 12 17 17 C 1.45199 * 116.99911 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47508 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47474 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99578 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00066 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00130 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46852 * 90.00025 * 23 21 19 25 25 H 1.48493 * 109.47264 * 210.00458 * 23 21 19 26 26 H 1.48507 * 109.46856 * 330.00490 * 23 21 19 27 27 C 1.34914 * 111.60926 * 359.97438 * 12 10 9 28 28 O 1.21240 * 127.25213 * 179.74503 * 27 12 10 29 29 H 1.08998 * 109.46899 * 300.05197 * 1 2 3 30 30 H 1.08997 * 109.47254 * 60.05869 * 1 2 3 31 31 H 1.09001 * 109.47078 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.48151 * 60.82996 * 4 2 1 33 33 H 1.09007 * 109.48804 * 300.80305 * 4 2 1 34 34 H 1.09003 * 109.45817 * 300.46052 * 5 4 2 35 35 H 1.08994 * 109.45552 * 180.47982 * 5 4 2 36 36 H 1.09004 * 109.47550 * 179.54501 * 6 5 4 37 37 H 1.08995 * 109.49441 * 59.52343 * 6 5 4 38 38 H 1.09002 * 109.45393 * 299.11399 * 7 6 5 39 39 H 1.08990 * 109.43787 * 179.16763 * 7 6 5 40 40 H 0.97002 * 126.78485 * 298.49115 * 9 8 7 41 41 H 1.09002 * 109.47046 * 30.01713 * 13 12 10 42 42 H 1.09006 * 109.47641 * 150.02057 * 13 12 10 43 43 H 1.08998 * 109.46956 * 300.00661 * 17 16 14 44 44 H 1.09007 * 109.46840 * 60.00074 * 17 16 14 45 45 H 1.09003 * 109.47490 * 300.00811 * 18 17 16 46 46 H 1.09007 * 109.46962 * 60.00208 * 18 17 16 47 47 H 0.97000 * 119.99604 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0398 -0.7205 -1.2507 5 6 3.5698 -0.7379 -1.2397 6 6 4.0633 -1.4821 0.0027 7 6 3.5618 -0.7648 1.2586 8 6 2.0378 -0.7176 1.2458 9 7 1.4796 -2.0736 1.3229 10 6 0.7571 -2.1242 2.4583 11 8 0.1536 -3.1107 2.8321 12 7 0.7774 -0.9655 3.1285 13 6 0.0787 -0.7346 4.3952 14 6 -1.3112 -0.2231 4.1162 15 8 -1.6800 -0.0671 2.9763 16 8 -2.1394 0.0590 5.1342 17 6 -3.4628 0.5481 4.7911 18 6 -4.2569 0.8120 6.0719 19 6 -5.6303 1.3202 5.7159 20 1 -5.9089 1.4423 4.6797 21 6 -6.5313 1.6283 6.7130 22 7 -6.1920 1.4791 7.9749 23 14 -8.2338 2.2575 6.2717 24 1 -9.1641 1.1090 6.1281 25 1 -8.7222 3.1590 7.3459 26 1 -8.1685 3.0048 4.9900 27 6 1.5212 -0.0367 2.4926 28 8 1.7274 1.1051 2.8443 29 1 -0.3633 0.5146 0.8895 30 1 -0.3633 0.5129 -0.8905 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 -0.1974 -2.1401 33 1 1.6647 -1.7439 -1.2591 34 1 3.9445 0.2856 -1.2229 35 1 3.9336 -1.2433 -2.1343 36 1 5.1532 -1.5012 0.0059 37 1 3.6820 -2.5031 -0.0095 38 1 3.9562 0.2511 1.2784 39 1 3.9008 -1.3032 2.1435 40 1 1.6060 -2.7910 0.6824 41 1 0.0168 -1.6698 4.9517 42 1 0.6259 0.0025 4.9830 43 1 -3.3720 1.4734 4.2222 44 1 -3.9815 -0.1987 4.1898 45 1 -4.3476 -0.1135 6.6405 46 1 -3.7384 1.5586 6.6736 47 1 -6.8261 1.6955 8.6764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021730093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:13 Heat of formation + Delta-G solvation = -147.706738 kcal Electronic energy + Delta-G solvation = -30576.171250 eV Core-core repulsion = 26338.282331 eV Total energy + Delta-G solvation = -4237.888919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17342 -40.05203 -39.06370 -38.59585 -36.33826 -35.89115 -34.36878 -33.35760 -33.12191 -30.52414 -30.47409 -29.04070 -26.90007 -25.09886 -24.37421 -23.07952 -22.32185 -21.63068 -20.84480 -20.47714 -19.89087 -18.22823 -17.94129 -16.90934 -16.83403 -16.19729 -16.10452 -16.02843 -15.87416 -15.36228 -15.32606 -14.90319 -14.72017 -14.48596 -14.42035 -13.71413 -13.58611 -13.51214 -13.26557 -12.78386 -12.61129 -12.42413 -12.36671 -12.18522 -12.04153 -11.47294 -11.35703 -11.24837 -11.09818 -11.08635 -10.99349 -10.88350 -10.80682 -10.76884 -10.62090 -10.22617 -10.03144 -9.71323 -9.68168 -9.57463 -9.29952 -8.44498 -6.10530 -4.14950 1.36354 1.75662 2.41546 2.64528 2.80096 3.22683 3.28843 3.34972 3.39512 3.56824 3.92553 4.06466 4.38692 4.40537 4.47789 4.55323 4.64714 4.78121 4.86772 4.91030 4.93564 5.02594 5.10847 5.21132 5.25389 5.26086 5.34286 5.39411 5.44627 5.52218 5.55032 5.63274 5.73281 5.74998 5.89040 6.04269 6.06982 6.12250 6.47919 6.61206 6.74323 6.89544 7.08726 7.54197 7.61427 7.83484 7.87181 8.08611 8.23292 8.90330 9.49407 11.00963 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.002353 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.210454 B =11895.997944 C =12248.355910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 H 0.094 0.906 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.115 4.115 8 C 0.133 3.867 9 N -0.713 5.713 10 C 0.710 3.290 11 O -0.536 6.536 12 N -0.564 5.564 13 C 0.124 3.876 14 C 0.444 3.556 15 O -0.507 6.507 16 O -0.351 6.351 17 C 0.077 3.923 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.538 3.462 28 O -0.457 6.457 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.438 0.562 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.991 -6.500 -17.532 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.104 4.104 3 H 0.112 0.888 4 C -0.150 4.150 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.153 4.153 8 C 0.042 3.958 9 N -0.378 5.378 10 C 0.410 3.590 11 O -0.409 6.409 12 N -0.311 5.311 13 C 0.001 3.999 14 C 0.285 3.715 15 O -0.395 6.395 16 O -0.267 6.267 17 C 0.005 3.995 18 C -0.013 4.013 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C 0.325 3.675 28 O -0.325 6.325 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.284 0.716 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.492 -6.278 -17.163 30.559 hybrid contribution -1.154 0.080 -0.467 1.248 sum 23.338 -6.198 -17.630 29.898 Atomic orbital electron populations 1.21929 0.93185 1.02957 1.03285 1.21294 0.97209 0.99954 0.91917 0.88752 1.21609 0.95467 1.00899 0.96986 1.21618 0.95472 1.01258 0.97852 1.21520 1.01092 0.99229 0.93524 1.21705 0.90343 1.03373 0.99889 1.21100 0.96296 0.83332 0.95109 1.45461 1.53561 1.14297 1.24454 1.15806 0.79606 0.82654 0.80896 1.91042 1.46393 1.32727 1.70707 1.46010 1.47151 1.13999 1.23949 1.21042 0.88782 1.06154 0.83921 1.23535 0.88134 0.75408 0.84453 1.90629 1.76612 1.49165 1.23123 1.86503 1.27683 1.75252 1.37241 1.23701 0.76189 0.97641 1.01983 1.19184 0.93327 0.98313 0.90439 1.20962 0.97327 1.44947 0.93224 0.92285 1.24982 0.98915 0.95387 0.94864 1.69974 1.35727 1.48018 0.99062 0.86465 0.83788 0.78826 0.78197 1.20461 1.21023 1.19738 1.20702 0.77082 0.85197 0.84552 1.90818 1.57253 1.14947 1.69482 0.91490 0.91680 0.92112 0.90722 0.91637 0.91335 0.91363 0.90806 0.91652 0.89140 0.90564 0.71630 0.84293 0.84509 0.92213 0.92190 0.95237 0.95253 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.64 37.16 0.32 -1.33 16 2 C -0.08 -0.66 2.15 -90.84 -0.20 -0.85 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -0.58 5.10 -26.68 -0.14 -0.72 16 5 C -0.12 -0.49 5.91 -26.72 -0.16 -0.65 16 6 C -0.12 -0.45 5.81 -26.69 -0.16 -0.61 16 7 C -0.11 -0.66 4.98 -26.96 -0.13 -0.79 16 8 C 0.13 1.10 0.58 -133.10 -0.08 1.02 16 9 N -0.71 -6.09 4.38 -53.87 -0.24 -6.32 16 10 C 0.71 8.95 8.51 -87.81 -0.75 8.20 16 11 O -0.54 -8.58 17.49 5.33 0.09 -8.49 16 12 N -0.56 -7.14 2.10 -122.08 -0.26 -7.40 16 13 C 0.12 1.60 6.30 -5.19 -0.03 1.57 16 14 C 0.44 7.88 8.03 36.01 0.29 8.17 16 15 O -0.51 -10.09 15.41 -18.74 -0.29 -10.38 16 16 O -0.35 -7.05 10.22 -39.26 -0.40 -7.46 16 17 C 0.08 1.75 5.40 37.15 0.20 1.95 16 18 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 19 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 23 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.54 6.38 5.67 -10.70 -0.06 6.32 16 28 O -0.46 -6.45 17.77 5.59 0.10 -6.35 16 29 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.68 7.54 -51.93 -0.39 0.29 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 7.36 -51.93 -0.38 -0.06 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.23 7.36 -51.93 -0.38 -0.15 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.44 2.72 7.75 -40.82 -0.32 2.41 16 41 H 0.14 1.54 7.86 -51.93 -0.41 1.13 16 42 H 0.14 1.43 8.01 -51.93 -0.42 1.02 16 43 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 44 H 0.06 1.36 8.13 -51.92 -0.42 0.94 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -34.87 384.56 -8.17 -43.04 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.24 Total: -2.41 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.45 Total: 9.15 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.24 Total: -39.50 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.50 Total: -32.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.87 -8.17 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.665 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds