Wall clock time and date at job start Tue Mar 31 2020 21:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.43009 * 2 1 4 4 C 1.53078 * 109.45078 * 240.05619 * 2 1 3 5 5 C 1.53018 * 109.41685 * 180.81757 * 4 2 1 6 6 C 1.53000 * 109.50512 * 60.47344 * 5 4 2 7 7 C 1.53081 * 109.42735 * 299.52661 * 6 5 4 8 8 C 1.52470 * 109.58003 * 59.14544 * 7 6 5 9 9 N 1.46837 * 110.54342 * 64.29370 * 8 7 6 10 10 C 1.34682 * 106.43080 * 118.51203 * 9 8 7 11 11 O 1.21538 * 123.79146 * 179.97438 * 10 9 8 12 12 N 1.33867 * 112.41920 * 0.02562 * 10 9 8 13 13 C 1.46496 * 124.19716 * 179.97438 * 12 10 9 14 14 C 1.50708 * 109.46855 * 270.02013 * 13 12 10 15 15 O 1.20816 * 120.00047 * 359.97438 * 14 13 12 16 16 O 1.34232 * 119.99676 * 179.97438 * 14 13 12 17 17 C 1.45199 * 116.99911 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47508 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47474 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99578 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00066 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00130 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46852 * 90.00025 * 23 21 19 25 25 H 1.48493 * 109.47264 * 210.00458 * 23 21 19 26 26 H 1.48507 * 109.46856 * 330.00490 * 23 21 19 27 27 C 1.34914 * 111.60926 * 359.97438 * 12 10 9 28 28 O 1.21240 * 127.25213 * 179.74503 * 27 12 10 29 29 H 1.08998 * 109.46899 * 300.05197 * 1 2 3 30 30 H 1.08997 * 109.47254 * 60.05869 * 1 2 3 31 31 H 1.09001 * 109.47078 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.48151 * 60.82996 * 4 2 1 33 33 H 1.09007 * 109.48804 * 300.80305 * 4 2 1 34 34 H 1.09003 * 109.45817 * 300.46052 * 5 4 2 35 35 H 1.08994 * 109.45552 * 180.47982 * 5 4 2 36 36 H 1.09004 * 109.47550 * 179.54501 * 6 5 4 37 37 H 1.08995 * 109.49441 * 59.52343 * 6 5 4 38 38 H 1.09002 * 109.45393 * 299.11399 * 7 6 5 39 39 H 1.08990 * 109.43787 * 179.16763 * 7 6 5 40 40 H 0.97002 * 126.78485 * 298.49115 * 9 8 7 41 41 H 1.09002 * 109.47046 * 30.01713 * 13 12 10 42 42 H 1.09006 * 109.47641 * 150.02057 * 13 12 10 43 43 H 1.08998 * 109.46956 * 300.00661 * 17 16 14 44 44 H 1.09007 * 109.46840 * 60.00074 * 17 16 14 45 45 H 1.09003 * 109.47490 * 300.00811 * 18 17 16 46 46 H 1.09007 * 109.46962 * 60.00208 * 18 17 16 47 47 H 0.97000 * 119.99604 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0398 -0.7205 -1.2507 5 6 3.5698 -0.7379 -1.2397 6 6 4.0633 -1.4821 0.0027 7 6 3.5618 -0.7648 1.2586 8 6 2.0378 -0.7176 1.2458 9 7 1.4796 -2.0736 1.3229 10 6 0.7571 -2.1242 2.4583 11 8 0.1536 -3.1107 2.8321 12 7 0.7774 -0.9655 3.1285 13 6 0.0787 -0.7346 4.3952 14 6 -1.3112 -0.2231 4.1162 15 8 -1.6800 -0.0671 2.9763 16 8 -2.1394 0.0590 5.1342 17 6 -3.4628 0.5481 4.7911 18 6 -4.2569 0.8120 6.0719 19 6 -5.6303 1.3202 5.7159 20 1 -5.9089 1.4423 4.6797 21 6 -6.5313 1.6283 6.7130 22 7 -6.1920 1.4791 7.9749 23 14 -8.2338 2.2575 6.2717 24 1 -9.1641 1.1090 6.1281 25 1 -8.7222 3.1590 7.3459 26 1 -8.1685 3.0048 4.9900 27 6 1.5212 -0.0367 2.4926 28 8 1.7274 1.1051 2.8443 29 1 -0.3633 0.5146 0.8895 30 1 -0.3633 0.5129 -0.8905 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 -0.1974 -2.1401 33 1 1.6647 -1.7439 -1.2591 34 1 3.9445 0.2856 -1.2229 35 1 3.9336 -1.2433 -2.1343 36 1 5.1532 -1.5012 0.0059 37 1 3.6820 -2.5031 -0.0095 38 1 3.9562 0.2511 1.2784 39 1 3.9008 -1.3032 2.1435 40 1 1.6060 -2.7910 0.6824 41 1 0.0168 -1.6698 4.9517 42 1 0.6259 0.0025 4.9830 43 1 -3.3720 1.4734 4.2222 44 1 -3.9815 -0.1987 4.1898 45 1 -4.3476 -0.1135 6.6405 46 1 -3.7384 1.5586 6.6736 47 1 -6.8261 1.6955 8.6764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021730093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:13 Heat of formation + Delta-G solvation = -169.502282 kcal Electronic energy + Delta-G solvation = -30577.116376 eV Core-core repulsion = 26338.282331 eV Total energy + Delta-G solvation = -4238.834045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.07690 -41.53260 -40.01329 -39.44060 -37.88615 -36.96754 -35.50047 -35.19294 -33.72079 -32.48932 -31.07538 -30.26693 -27.61014 -27.05009 -25.20823 -24.10190 -23.30249 -22.78498 -22.31833 -21.43581 -20.60808 -19.37382 -19.16216 -18.45847 -17.95046 -17.87009 -17.53735 -17.16849 -16.73328 -16.56972 -16.38822 -16.06037 -15.69408 -15.42328 -15.35894 -15.17430 -14.48974 -14.40636 -14.32406 -14.07453 -13.85194 -13.71875 -13.14436 -13.13486 -13.10107 -12.84010 -12.69656 -12.64398 -12.61994 -12.24919 -12.13884 -12.03081 -11.77277 -11.74749 -11.56601 -11.50904 -11.48838 -11.42595 -11.07939 -10.94611 -10.63991 -10.46121 -8.29641 -6.43123 0.41072 0.74896 0.96646 1.38675 1.41013 1.49663 1.54209 1.96374 2.03508 2.37981 2.74492 3.04640 3.26953 3.47738 3.50038 3.70044 3.88207 4.01612 4.03766 4.10230 4.13361 4.15050 4.18498 4.27429 4.37606 4.41940 4.44937 4.59593 4.62709 4.71403 4.81044 4.91272 5.04793 5.10618 5.17130 5.19434 5.23641 5.31610 5.35628 5.42342 5.44646 5.52965 5.69554 5.69656 5.81085 6.02717 6.16283 6.51957 6.69947 6.94883 7.26547 8.82972 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.002353 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.210454 B =11895.997944 C =12248.355910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.096 0.904 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.111 4.111 8 C 0.139 3.861 9 N -0.690 5.690 10 C 0.706 3.294 11 O -0.574 6.574 12 N -0.570 5.570 13 C 0.128 3.872 14 C 0.439 3.561 15 O -0.530 6.530 16 O -0.357 6.357 17 C 0.093 3.907 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.925 5.925 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.264 1.264 27 C 0.531 3.469 28 O -0.483 6.483 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.451 0.549 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.424 -6.803 -19.543 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.114 0.886 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.150 4.150 7 C -0.149 4.149 8 C 0.049 3.951 9 N -0.355 5.355 10 C 0.407 3.593 11 O -0.450 6.450 12 N -0.316 5.316 13 C 0.005 3.995 14 C 0.282 3.718 15 O -0.420 6.420 16 O -0.273 6.273 17 C 0.020 3.980 18 C -0.006 4.006 19 C -0.589 4.589 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.564 5.564 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.188 1.188 27 C 0.320 3.680 28 O -0.353 6.353 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.300 0.700 41 H 0.177 0.823 42 H 0.181 0.819 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.975 -6.592 -19.222 32.979 hybrid contribution -1.546 0.187 0.144 1.564 sum 24.429 -6.405 -19.077 31.650 Atomic orbital electron populations 1.21880 0.95440 1.01863 1.01831 1.21312 0.95086 1.00549 0.92983 0.88596 1.21607 0.96652 1.00809 0.95410 1.21612 0.94062 1.01685 0.98482 1.21545 1.02035 0.99202 0.92193 1.21763 0.87680 1.04117 1.01370 1.21246 0.98080 0.82389 0.93403 1.45383 1.52109 1.14841 1.23197 1.15958 0.79653 0.82080 0.81633 1.91015 1.48191 1.33924 1.71844 1.46157 1.46975 1.14420 1.24049 1.21244 0.85870 1.07617 0.84806 1.24535 0.89251 0.74437 0.83614 1.90621 1.77282 1.50149 1.23924 1.86489 1.26849 1.75606 1.38329 1.23191 0.77446 0.97667 0.99687 1.18989 0.93548 0.96500 0.91565 1.21345 0.98423 1.45496 0.93675 0.91870 1.25965 1.03383 0.95275 0.94634 1.70092 1.37443 1.48683 1.00199 0.85318 0.78193 0.78473 0.78292 1.19505 1.20192 1.18828 1.21356 0.76484 0.84841 0.85316 1.90797 1.58225 1.15958 1.70322 0.95401 0.90642 0.92967 0.90031 0.91057 0.91130 0.89832 0.89238 0.90922 0.88787 0.90222 0.70042 0.82253 0.81862 0.92261 0.92404 0.97340 0.97246 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.64 71.98 0.62 -2.59 16 2 C -0.08 -1.13 2.15 -10.94 -0.02 -1.15 16 3 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.11 -0.82 5.10 30.63 0.16 -0.66 16 5 C -0.12 -0.52 5.91 30.60 0.18 -0.34 16 6 C -0.11 -0.48 5.81 30.62 0.18 -0.30 16 7 C -0.11 -1.00 4.98 30.45 0.15 -0.85 16 8 C 0.14 2.11 0.58 2.59 0.00 2.11 16 9 N -0.69 -10.86 4.38 -442.68 -1.94 -12.80 16 10 C 0.71 17.51 8.51 179.37 1.53 19.04 16 11 O -0.57 -18.37 17.49 -3.84 -0.07 -18.43 16 12 N -0.57 -14.28 2.10 -777.27 -1.63 -15.91 16 13 C 0.13 3.27 6.30 85.64 0.54 3.81 16 14 C 0.44 15.89 8.03 71.24 0.57 16.47 16 15 O -0.53 -21.73 15.41 21.99 0.34 -21.39 16 16 O -0.36 -14.72 10.22 -51.44 -0.53 -15.24 16 17 C 0.09 4.36 5.40 71.98 0.39 4.74 16 18 C 0.03 1.71 5.35 29.85 0.16 1.87 16 19 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 20 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 21 C 0.01 0.38 5.46 84.65 0.46 0.84 16 22 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 23 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.53 12.40 5.67 87.78 0.50 12.89 16 28 O -0.48 -13.61 17.77 -2.91 -0.05 -13.66 16 29 H 0.03 0.80 6.43 -2.39 -0.02 0.78 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.16 7.54 -2.39 -0.02 1.14 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.48 7.36 -2.38 -0.02 0.46 16 34 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.07 0.24 7.36 -2.39 -0.02 0.22 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.45 4.69 7.75 -92.71 -0.72 3.97 16 41 H 0.16 3.45 7.86 -2.39 -0.02 3.43 16 42 H 0.16 3.30 8.01 -2.38 -0.02 3.28 16 43 H 0.06 2.75 8.13 -2.39 -0.02 2.73 16 44 H 0.06 2.70 8.13 -2.38 -0.02 2.68 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.51 384.56 4.35 -73.16 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.27 Total: 9.49 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 5.65 Total: 24.19 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.28 Total: -84.42 kcal Atomic # 8 Polarization: -68.42 SS G_CDS: -0.31 Total: -68.73 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -77.51 4.35 -73.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.346 kcal (2) G-P(sol) polarization free energy of solvation -77.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds