Wall clock time and date at job start Tue Mar 31 2020 21:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46200 * 2 1 4 4 C 1.53092 * 109.46031 * 119.97473 * 2 1 3 5 5 C 1.52995 * 109.41586 * 179.18488 * 4 2 1 6 6 C 1.52996 * 109.57011 * 299.59835 * 5 4 2 7 7 C 1.53097 * 109.41916 * 60.39687 * 6 5 4 8 8 C 1.52469 * 109.46329 * 240.01779 * 2 1 3 9 9 N 1.46821 * 110.54903 * 58.36755 * 8 2 1 10 10 C 1.34686 * 106.42158 * 241.24976 * 9 8 2 11 11 O 1.21546 * 123.79017 * 180.21623 * 10 9 8 12 12 N 1.33867 * 112.41990 * 0.40783 * 10 9 8 13 13 C 1.46504 * 124.19370 * 179.83894 * 12 10 9 14 14 C 1.50701 * 109.46778 * 269.69170 * 13 12 10 15 15 O 1.20822 * 119.99988 * 0.02562 * 14 13 12 16 16 O 1.34231 * 119.99870 * 179.97438 * 14 13 12 17 17 C 1.45198 * 116.99983 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46884 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99923 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47093 * 90.00088 * 23 21 19 25 25 H 1.48495 * 109.46891 * 210.00496 * 23 21 19 26 26 H 1.48504 * 109.47189 * 330.00185 * 23 21 19 27 27 C 1.34911 * 111.61094 * 359.56125 * 12 10 9 28 28 O 1.21227 * 127.25766 * 180.28219 * 27 12 10 29 29 H 1.09003 * 109.47015 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47231 * 299.98312 * 1 2 3 31 31 H 1.09001 * 109.47690 * 59.98211 * 1 2 3 32 32 H 1.09004 * 109.47967 * 299.17248 * 4 2 1 33 33 H 1.09001 * 109.48156 * 59.19668 * 4 2 1 34 34 H 1.08999 * 109.45684 * 59.62971 * 5 4 2 35 35 H 1.09004 * 109.45809 * 179.56861 * 5 4 2 36 36 H 1.09004 * 109.47813 * 180.37685 * 6 5 4 37 37 H 1.09000 * 109.47974 * 300.40249 * 6 5 4 38 38 H 1.09000 * 109.46226 * 180.81928 * 7 6 5 39 39 H 1.09001 * 109.46250 * 60.84997 * 7 6 5 40 40 H 0.97002 * 126.78999 * 61.50438 * 9 8 2 41 41 H 1.09005 * 109.46871 * 149.69554 * 13 12 10 42 42 H 1.08998 * 109.47054 * 29.69835 * 13 12 10 43 43 H 1.09001 * 109.46782 * 60.00304 * 17 16 14 44 44 H 1.08992 * 109.47385 * 300.00392 * 17 16 14 45 45 H 1.09002 * 109.47398 * 300.00338 * 18 17 16 46 46 H 1.09001 * 109.47194 * 60.00518 * 18 17 16 47 47 H 0.97000 * 119.99684 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7212 1.2504 5 6 3.5698 -0.7384 1.2392 6 6 4.0648 -1.4800 -0.0041 7 6 3.5621 -0.7617 -1.2592 8 6 2.0380 -0.7184 -1.2452 9 7 1.5299 -0.0674 -2.4591 10 6 0.7906 -0.9896 -3.1048 11 8 0.2216 -0.7829 -4.1588 12 7 0.7495 -2.1584 -2.4533 13 6 0.0172 -3.3373 -2.9227 14 6 -1.3847 -3.3106 -2.3703 15 8 -1.7362 -2.4001 -1.6581 16 8 -2.2432 -4.2979 -2.6703 17 6 -3.5769 -4.2067 -2.1037 18 6 -4.4054 -5.4119 -2.5529 19 6 -5.7898 -5.3169 -1.9652 20 1 -6.0526 -4.4803 -1.3348 21 6 -6.7210 -6.2980 -2.2324 22 7 -7.9293 -6.2148 -1.7200 23 14 -6.2667 -7.7447 -3.3234 24 1 -5.7171 -8.8419 -2.4872 25 1 -7.4767 -8.2251 -4.0377 26 1 -5.2451 -7.3170 -4.3127 27 6 1.4709 -2.1178 -1.3140 28 8 1.6309 -3.0148 -0.5143 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5136 0.8901 31 1 -0.3634 0.5141 -0.8898 32 1 1.6888 -0.1985 2.1402 33 1 1.6649 -1.7446 1.2582 34 1 3.9443 0.2851 1.2245 35 1 3.9338 -1.2450 2.1330 36 1 5.1547 -1.4972 -0.0072 37 1 3.6851 -2.5017 0.0068 38 1 3.9022 -1.2977 -2.1452 39 1 3.9542 0.2552 -1.2772 40 1 1.6969 0.8452 -2.7422 41 1 0.5249 -4.2397 -2.5820 42 1 -0.0212 -3.3313 -4.0120 43 1 -4.0549 -3.2888 -2.4458 44 1 -3.5096 -4.1975 -1.0159 45 1 -4.4727 -5.4215 -3.6408 46 1 -3.9271 -6.3296 -2.2103 47 1 -8.5843 -6.9052 -1.9077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021730097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:15 Heat of formation + Delta-G solvation = -165.352326 kcal Electronic energy + Delta-G solvation = -30861.370294 eV Core-core repulsion = 26622.716204 eV Total energy + Delta-G solvation = -4238.654090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.08781 -41.54958 -40.24066 -38.97046 -37.89034 -37.12059 -35.47232 -35.38063 -33.69247 -32.90567 -30.73310 -30.40032 -27.59709 -27.16654 -25.17084 -23.90643 -23.23893 -22.63430 -22.30292 -21.87257 -20.35132 -19.49712 -19.21758 -18.80723 -18.00034 -17.90667 -17.57140 -17.06901 -16.69188 -16.46562 -16.31534 -15.97585 -15.81442 -15.44115 -15.20599 -14.97894 -14.70213 -14.59432 -14.28886 -14.09039 -13.89005 -13.77355 -13.26406 -13.20605 -13.18530 -12.84397 -12.76537 -12.56563 -12.52057 -12.24360 -12.09974 -11.92086 -11.83637 -11.81213 -11.59252 -11.53676 -11.51827 -11.28857 -11.05987 -10.83948 -10.83616 -10.42577 -8.36909 -6.45721 0.45888 0.76064 0.96202 1.37072 1.39058 1.49655 1.52019 1.96657 2.05358 2.32782 2.75444 2.97962 3.31233 3.45198 3.49773 3.70651 3.87634 4.02541 4.07315 4.08944 4.09984 4.11882 4.19188 4.28019 4.35257 4.44248 4.48559 4.55502 4.60494 4.72891 4.82181 4.91688 4.95454 5.01985 5.13105 5.19008 5.24286 5.25477 5.32146 5.35859 5.41099 5.48181 5.54430 5.71851 5.84021 6.12129 6.23356 6.50451 6.60114 6.96789 7.19440 8.79296 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002577 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.161709 B =10863.564279 C =11160.208907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 H 0.127 0.873 4 C -0.125 4.125 5 C -0.112 4.112 6 C -0.128 4.128 7 C -0.106 4.106 8 C 0.135 3.865 9 N -0.695 5.695 10 C 0.705 3.295 11 O -0.575 6.575 12 N -0.572 5.572 13 C 0.128 3.872 14 C 0.439 3.561 15 O -0.531 6.531 16 O -0.353 6.353 17 C 0.096 3.904 18 C -0.003 4.003 19 C -0.545 4.545 20 H 0.033 0.967 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.956 3.044 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.243 1.243 27 C 0.531 3.469 28 O -0.472 6.472 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.454 0.546 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.772 13.773 1.185 35.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.094 4.094 3 H 0.145 0.855 4 C -0.163 4.163 5 C -0.150 4.150 6 C -0.166 4.166 7 C -0.144 4.144 8 C 0.045 3.955 9 N -0.359 5.359 10 C 0.405 3.595 11 O -0.451 6.451 12 N -0.319 5.319 13 C 0.005 3.995 14 C 0.281 3.719 15 O -0.420 6.420 16 O -0.268 6.268 17 C 0.023 3.977 18 C -0.040 4.040 19 C -0.583 4.583 20 H 0.051 0.949 21 C -0.186 4.186 22 N -0.584 5.584 23 Si 0.777 3.223 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.166 1.166 27 C 0.320 3.680 28 O -0.341 6.341 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.302 0.698 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 32.193 13.493 1.275 34.930 hybrid contribution -1.286 -0.272 -0.201 1.329 sum 30.908 13.221 1.074 33.634 Atomic orbital electron populations 1.21897 0.95761 1.00967 1.02508 1.21314 0.94748 1.01580 0.91774 0.85536 1.21752 0.97433 1.00494 0.96594 1.21505 0.93561 1.01925 0.97979 1.21689 1.01947 0.99527 0.93465 1.21753 0.87528 1.05105 1.00002 1.21324 0.98415 0.88108 0.87688 1.45411 1.52469 1.15058 1.22990 1.15987 0.79586 0.80834 0.83050 1.91016 1.50204 1.80754 1.23139 1.46196 1.47096 1.13844 1.24727 1.21256 0.84761 0.89396 1.04068 1.24577 0.89516 0.79568 0.78212 1.90650 1.78822 1.36146 1.36397 1.86440 1.24653 1.47132 1.68600 1.22971 0.77155 1.00371 0.97246 1.19471 0.92760 0.93862 0.97918 1.21096 0.96313 1.09173 1.31670 0.94873 1.25974 0.94271 1.01368 0.97019 1.70043 1.05747 1.36326 1.46258 0.85582 0.78652 0.78480 0.79538 1.18638 1.20558 1.16612 1.21270 0.76728 0.90973 0.79022 1.90755 1.58589 1.43537 1.41237 0.95473 0.90739 0.93190 0.90144 0.93184 0.89398 0.91310 0.88941 0.92630 0.90444 0.86298 0.69798 0.81684 0.82172 0.92696 0.92535 0.94447 0.94438 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.66 71.98 0.62 -2.62 16 2 C -0.07 -1.00 2.29 -10.94 -0.03 -1.02 16 3 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -1.72 4.95 30.62 0.15 -1.57 16 5 C -0.11 -0.97 5.90 30.59 0.18 -0.78 16 6 C -0.13 -1.18 5.67 30.63 0.17 -1.01 16 7 C -0.11 -0.82 5.11 30.45 0.16 -0.66 16 8 C 0.13 1.90 0.76 2.59 0.00 1.91 16 9 N -0.70 -10.16 5.12 -442.70 -2.27 -12.43 16 10 C 0.70 16.83 8.55 179.37 1.53 18.36 16 11 O -0.58 -17.88 17.48 -3.86 -0.07 -17.95 16 12 N -0.57 -13.60 2.10 -777.28 -1.63 -15.24 16 13 C 0.13 3.01 6.30 85.63 0.54 3.55 16 14 C 0.44 14.98 8.03 71.24 0.57 15.55 16 15 O -0.53 -21.29 15.48 21.98 0.34 -20.95 16 16 O -0.35 -13.23 10.22 -51.42 -0.53 -13.76 16 17 C 0.10 4.25 5.40 71.98 0.39 4.64 16 18 C 0.00 -0.13 4.42 29.85 0.13 0.00 16 19 C -0.54 -32.12 9.66 25.60 0.25 -31.87 16 20 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 21 C 0.01 0.69 5.47 84.65 0.46 1.15 16 22 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 23 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 27 C 0.53 11.69 5.12 87.78 0.45 12.14 16 28 O -0.47 -12.24 13.80 -2.87 -0.04 -12.28 16 29 H 0.03 0.78 6.44 -2.39 -0.02 0.76 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.13 7.61 -2.39 -0.02 1.11 16 32 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 1.04 6.08 -2.39 -0.01 1.02 16 34 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.05 0.84 6.08 -2.39 -0.01 0.82 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.45 3.85 8.96 -92.71 -0.83 3.02 16 41 H 0.17 2.92 8.01 -2.38 -0.02 2.90 16 42 H 0.16 3.10 7.86 -2.39 -0.02 3.08 16 43 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 44 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 45 H 0.04 1.75 7.20 -2.39 -0.02 1.74 16 46 H 0.04 1.72 7.57 -2.39 -0.02 1.71 16 47 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -80.44 376.18 3.69 -76.75 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.11 Total: 11.50 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.59 Total: 17.76 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.60 Total: -86.77 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -0.29 Total: -64.93 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -80.44 3.69 -76.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021730097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.606 kcal (2) G-P(sol) polarization free energy of solvation -80.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds