Wall clock time and date at job start Tue Mar 31 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53231 * 1 3 3 H 1.08721 * 109.12741 * 2 1 4 4 C 1.52961 * 109.22830 * 120.21780 * 2 1 3 5 5 C 1.52173 * 109.95900 * 181.14840 * 4 2 1 6 6 C 1.51508 * 112.99270 * 306.35075 * 5 4 2 7 7 C 1.51937 * 115.30097 * 44.99886 * 6 5 4 8 8 C 1.54380 * 108.06392 * 197.30257 * 7 6 5 9 9 C 1.53095 * 110.77765 * 79.82478 * 7 6 5 10 10 C 1.52465 * 112.44218 * 316.11621 * 7 6 5 11 11 N 1.48110 * 108.77063 * 185.62108 * 5 4 2 12 12 C 1.34499 * 106.07371 * 228.54440 * 11 5 4 13 13 O 1.21523 * 123.96895 * 190.09269 * 12 11 5 14 14 N 1.33826 * 112.15428 * 10.47003 * 12 11 5 15 15 C 1.46406 * 124.36470 * 177.11070 * 14 12 11 16 16 C 1.50703 * 109.47074 * 90.02221 * 15 14 12 17 17 O 1.21214 * 120.00212 * 359.97438 * 16 15 14 18 18 O 1.34314 * 119.99972 * 180.02562 * 16 15 14 19 19 C 1.34924 * 116.99847 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99978 * 359.97438 * 19 18 16 21 21 C 1.38754 * 119.99782 * 179.97438 * 19 18 16 22 22 N 1.31450 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00048 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46781 * 90.00187 * 23 21 19 25 25 H 1.48495 * 109.47344 * 210.00536 * 23 21 19 26 26 H 1.48502 * 109.47091 * 330.00788 * 23 21 19 27 27 C 1.35108 * 111.34919 * 358.09412 * 14 12 11 28 28 O 1.21206 * 126.20801 * 171.47915 * 27 14 12 29 29 H 1.08998 * 109.46834 * 299.78424 * 1 2 3 30 30 H 1.09000 * 109.46646 * 59.78707 * 1 2 3 31 31 H 1.08996 * 109.46739 * 179.78716 * 1 2 3 32 32 H 1.09106 * 109.40543 * 60.86102 * 4 2 1 33 33 H 1.09118 * 109.38862 * 301.41018 * 4 2 1 34 34 H 1.10047 * 108.67746 * 167.39239 * 6 5 4 35 35 H 1.10097 * 108.59140 * 282.78856 * 6 5 4 36 36 H 1.09003 * 109.47201 * 181.74270 * 8 7 6 37 37 H 1.08999 * 109.47570 * 301.74152 * 8 7 6 38 38 H 1.09002 * 109.47300 * 61.74345 * 8 7 6 39 39 H 1.08999 * 109.47194 * 294.97405 * 9 7 6 40 40 H 1.08998 * 109.47400 * 54.97798 * 9 7 6 41 41 H 1.09000 * 109.47073 * 174.98033 * 9 7 6 42 42 H 1.09357 * 109.36254 * 291.62936 * 10 7 6 43 43 H 1.09301 * 109.44819 * 172.86218 * 10 7 6 44 44 H 0.96652 * 126.09889 * 49.53040 * 11 5 4 45 45 H 1.09002 * 109.47182 * 210.02265 * 15 14 12 46 46 H 1.09001 * 109.47248 * 330.02347 * 15 14 12 47 47 H 0.96992 * 119.99574 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5323 0.0000 0.0000 3 1 1.8886 1.0272 0.0000 4 6 2.0361 -0.7269 1.2480 5 6 3.5574 -0.7119 1.2793 6 6 4.1808 -1.2520 0.0084 7 6 3.5617 -0.7469 -1.2840 8 6 3.9933 -1.6945 -2.4238 9 6 4.0836 0.6511 -1.6261 10 6 2.0379 -0.7409 -1.2359 11 7 4.0188 -1.5360 2.4202 12 6 4.9282 -0.7912 3.0739 13 8 5.6437 -1.2160 3.9595 14 7 4.9484 0.4750 2.6413 15 6 5.7926 1.5285 3.2079 16 6 7.1127 1.5594 2.4815 17 8 7.3268 0.7781 1.5799 18 8 8.0523 2.4522 2.8339 19 6 9.2114 2.4261 2.1437 20 1 9.3504 1.7085 1.3487 21 6 10.2247 3.3213 2.4555 22 7 10.0555 4.1943 3.4235 23 14 11.8297 3.2848 1.5005 24 1 11.7288 4.1908 0.3282 25 1 12.9390 3.7341 2.3795 26 1 12.0970 1.9003 1.0345 27 6 4.0743 0.6628 1.6284 28 8 3.7679 1.7267 1.1350 29 1 -0.3633 0.5105 0.8919 30 1 -0.3632 0.5171 -0.8881 31 1 -0.3633 -1.0276 -0.0038 32 1 1.6823 -1.7589 1.2340 33 1 1.6489 -0.2288 2.1384 34 1 5.2528 -1.0034 0.0085 35 1 4.1157 -2.3509 0.0250 36 1 3.5862 -1.3350 -3.3689 37 1 5.0814 -1.7196 -2.4831 38 1 3.6170 -2.6978 -2.2243 39 1 3.7528 1.3586 -0.8658 40 1 5.1730 0.6346 -1.6577 41 1 3.6965 0.9555 -2.5985 42 1 1.6718 -1.7711 -1.2126 43 1 1.6474 -0.2538 -2.1331 44 1 3.7265 -2.4332 2.6296 45 1 5.2946 2.4918 3.0978 46 1 5.9644 1.3271 4.2653 47 1 10.7640 4.8198 3.6416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021973231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:56 Heat of formation + Delta-G solvation = -158.600871 kcal Electronic energy + Delta-G solvation = -31712.652780 eV Core-core repulsion = 27474.291455 eV Total energy + Delta-G solvation = -4238.361325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.96476 -41.13734 -40.39447 -39.41604 -37.51366 -37.34947 -35.85332 -35.05551 -34.38607 -31.32503 -30.43295 -28.14263 -27.62755 -27.43871 -27.38401 -25.34305 -23.77546 -22.53460 -21.74646 -21.24853 -20.01620 -19.48941 -19.08487 -18.99280 -17.76294 -17.51320 -16.92156 -16.76215 -16.67094 -16.42937 -16.22070 -16.04854 -15.78541 -15.41499 -15.22201 -15.12627 -14.49424 -14.25032 -14.00294 -13.92360 -13.70602 -13.43435 -13.17929 -13.05671 -12.98039 -12.77668 -12.64101 -12.54516 -12.44287 -12.30053 -12.23899 -12.13223 -12.07292 -11.78850 -11.69927 -11.46497 -11.27210 -11.13901 -10.97424 -10.88410 -10.76291 -10.44931 -8.60767 -6.41548 0.45308 0.87827 1.18983 1.30377 1.47357 1.52197 1.72092 1.99093 2.11147 2.60077 2.82181 2.89975 3.36569 3.45029 3.71562 3.82387 3.87018 3.97009 4.01868 4.14807 4.18138 4.26203 4.33399 4.43142 4.58956 4.60671 4.70604 4.74593 4.79691 4.84073 4.89157 4.91853 4.97398 5.01342 5.07286 5.16161 5.16851 5.24603 5.33000 5.41643 5.46735 5.52724 5.65843 5.73961 5.74362 5.88284 6.24252 6.49720 6.82869 6.98790 7.59823 8.59484 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003490 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.988666 B = 8021.972789 C = 8682.272339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.063 0.937 4 C -0.099 4.099 5 C 0.149 3.851 6 C -0.105 4.105 7 C -0.051 4.051 8 C -0.141 4.141 9 C -0.159 4.159 10 C -0.095 4.095 11 N -0.701 5.701 12 C 0.704 3.296 13 O -0.578 6.578 14 N -0.572 5.572 15 C 0.143 3.857 16 C 0.381 3.619 17 O -0.573 6.573 18 O -0.234 6.234 19 C -0.423 4.423 20 H 0.079 0.921 21 C -0.001 4.001 22 N -0.897 5.897 23 Si 1.018 2.982 24 H -0.258 1.258 25 H -0.256 1.256 26 H -0.266 1.266 27 C 0.527 3.473 28 O -0.472 6.472 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.454 0.546 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.997 -12.355 -8.398 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.081 0.919 4 C -0.137 4.137 5 C 0.060 3.940 6 C -0.143 4.143 7 C -0.052 4.052 8 C -0.198 4.198 9 C -0.217 4.217 10 C -0.132 4.132 11 N -0.367 5.367 12 C 0.405 3.595 13 O -0.453 6.453 14 N -0.318 5.318 15 C 0.020 3.980 16 C 0.227 3.773 17 O -0.471 6.471 18 O -0.142 6.142 19 C -0.499 4.499 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.534 5.534 23 Si 0.836 3.164 24 H -0.182 1.182 25 H -0.180 1.180 26 H -0.190 1.190 27 C 0.316 3.684 28 O -0.341 6.341 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.303 0.697 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.550 -11.953 -8.259 25.990 hybrid contribution 1.497 0.117 0.024 1.502 sum -20.053 -11.836 -8.235 24.699 Atomic orbital electron populations 1.21792 0.92746 1.02973 1.02042 1.21145 0.97216 0.99696 0.93803 0.91864 1.21719 0.86839 1.05038 1.00088 1.21089 0.99390 0.85131 0.88386 1.21551 0.98464 1.03130 0.91147 1.20348 0.96794 0.94857 0.93176 1.22232 1.00537 0.99409 0.97617 1.22192 0.99165 0.97805 1.02494 1.21541 0.91537 1.02189 0.97915 1.45710 1.43246 1.19460 1.28317 1.15973 0.80950 0.80910 0.81676 1.90978 1.45307 1.74597 1.34467 1.46202 1.38350 1.11147 1.36075 1.20807 0.85387 0.92825 0.99000 1.24359 0.88240 0.80456 0.84242 1.90525 1.81316 1.42244 1.33021 1.83865 1.23991 1.50571 1.55733 1.21403 0.90091 1.20928 1.17462 0.90300 1.26562 1.02501 0.93599 0.97504 1.70064 1.35689 1.18766 1.28868 0.84633 0.74526 0.79373 0.77842 1.18218 1.17958 1.19016 1.21485 0.77384 0.92369 0.77186 1.90679 1.59423 1.30021 1.54016 0.92832 0.92161 0.90757 0.86030 0.90512 0.94681 0.86877 0.91252 0.94404 0.90415 0.92261 0.95962 0.91160 0.88951 0.90634 0.69733 0.83485 0.84105 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.18 72.06 0.66 -0.70 16 2 C -0.10 -1.44 2.54 -10.83 -0.03 -1.47 16 3 H 0.06 1.33 5.52 -2.53 -0.01 1.32 16 4 C -0.10 -1.37 4.22 30.31 0.13 -1.24 16 5 C 0.15 3.29 0.87 1.87 0.00 3.29 16 6 C -0.10 -2.29 3.72 29.76 0.11 -2.18 16 7 C -0.05 -0.96 0.70 -52.21 -0.04 -1.00 16 8 C -0.14 -2.19 8.09 72.45 0.59 -1.60 16 9 C -0.16 -4.15 8.00 72.01 0.58 -3.58 16 10 C -0.09 -1.19 3.77 30.32 0.11 -1.08 16 11 N -0.70 -15.54 5.76 -442.69 -2.55 -18.09 16 12 C 0.70 24.04 8.58 179.44 1.54 25.58 16 13 O -0.58 -24.09 17.52 -3.79 -0.07 -24.15 16 14 N -0.57 -20.54 2.10 -777.76 -1.63 -22.18 16 15 C 0.14 5.72 6.31 85.65 0.54 6.26 16 16 C 0.38 20.37 7.97 71.24 0.57 20.94 16 17 O -0.57 -33.24 15.67 20.76 0.33 -32.92 16 18 O -0.23 -14.35 9.75 14.80 0.14 -14.20 16 19 C -0.42 -26.66 9.65 67.94 0.66 -26.00 16 20 H 0.08 5.08 6.86 -2.91 -0.02 5.06 16 21 C 0.00 -0.04 5.49 84.87 0.47 0.43 16 22 N -0.90 -53.90 13.67 21.63 0.30 -53.60 16 23 Si 1.02 44.63 29.55 68.60 2.03 46.66 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.53 16.76 6.46 87.69 0.57 17.33 16 28 O -0.47 -16.54 13.55 -2.80 -0.04 -16.58 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 0.83 8.15 -2.33 -0.02 0.81 16 33 H 0.08 1.09 8.11 -2.32 -0.02 1.07 16 34 H 0.03 1.10 7.94 -1.83 -0.01 1.09 16 35 H 0.11 1.77 7.93 -1.80 -0.01 1.76 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 39 H 0.06 1.79 4.11 -2.39 -0.01 1.78 16 40 H 0.02 0.69 8.07 -2.39 -0.02 0.67 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 42 H 0.09 0.70 8.11 -2.20 -0.02 0.68 16 43 H 0.08 0.88 8.13 -2.23 -0.02 0.87 16 44 H 0.45 6.48 8.94 -92.97 -0.83 5.65 16 45 H 0.15 5.16 7.91 -2.39 -0.02 5.14 16 46 H 0.14 5.14 7.90 -2.39 -0.02 5.12 16 47 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -84.50 377.39 5.14 -79.37 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.18 Total: 20.72 kcal Atomic # 6 Polarization: 28.52 SS G_CDS: 6.45 Total: 34.97 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -3.89 Total: -93.86 kcal Atomic # 8 Polarization: -88.22 SS G_CDS: 0.37 Total: -87.85 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -84.50 5.14 -79.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.234 kcal (2) G-P(sol) polarization free energy of solvation -84.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds