Wall clock time and date at job start Tue Mar 31 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.48225 * 2 1 4 4 C 1.53081 * 109.48775 * 239.97164 * 2 1 3 5 5 C 1.52470 * 109.57670 * 180.86166 * 4 2 1 6 6 C 1.52476 * 110.74821 * 58.58785 * 5 4 2 7 7 C 1.53081 * 109.57918 * 301.41486 * 6 5 4 8 8 C 1.52995 * 109.47795 * 179.12747 * 7 6 5 9 9 C 1.52993 * 109.48180 * 299.14766 * 7 6 5 10 10 C 1.53007 * 109.42012 * 59.14285 * 7 6 5 11 11 N 1.46832 * 110.53911 * 295.72621 * 5 4 2 12 12 C 1.34686 * 106.42988 * 241.49381 * 11 5 4 13 13 O 1.21541 * 123.78771 * 180.26470 * 12 11 5 14 14 N 1.33862 * 112.42071 * 359.97438 * 12 11 5 15 15 C 1.46499 * 124.19569 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46967 * 89.97562 * 15 14 12 17 17 O 1.21204 * 120.00079 * 359.97438 * 16 15 14 18 18 O 1.34319 * 119.99246 * 180.02562 * 16 15 14 19 19 C 1.34921 * 116.99180 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00250 * 359.97438 * 19 18 16 21 21 C 1.38757 * 119.99496 * 180.02562 * 19 18 16 22 22 N 1.31437 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99721 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47040 * 60.00154 * 23 21 19 25 25 H 1.48502 * 109.46760 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47243 * 299.99797 * 23 21 19 27 27 C 1.34909 * 111.60817 * 0.02562 * 14 12 11 28 28 O 1.21236 * 127.25592 * 179.97438 * 27 14 12 29 29 H 1.09002 * 109.47180 * 299.98005 * 1 2 3 30 30 H 1.09005 * 109.46903 * 59.97692 * 1 2 3 31 31 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.45335 * 60.82993 * 4 2 1 33 33 H 1.08997 * 109.45411 * 300.89310 * 4 2 1 34 34 H 1.08998 * 109.45097 * 61.44989 * 6 5 4 35 35 H 1.09003 * 109.45391 * 181.38428 * 6 5 4 36 36 H 1.09003 * 109.47278 * 60.00202 * 8 7 6 37 37 H 1.08999 * 109.47239 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47301 * 300.00442 * 8 7 6 39 39 H 1.09001 * 109.47038 * 86.89299 * 9 7 6 40 40 H 1.08997 * 109.47588 * 206.89419 * 9 7 6 41 41 H 1.09004 * 109.47543 * 326.89461 * 9 7 6 42 42 H 1.09003 * 109.46227 * 59.55082 * 10 7 6 43 43 H 1.09002 * 109.45858 * 179.51901 * 10 7 6 44 44 H 0.97004 * 126.78450 * 61.49317 * 11 5 4 45 45 H 1.08997 * 109.47179 * 209.97967 * 15 14 12 46 46 H 1.09005 * 109.46662 * 329.97535 * 15 14 12 47 47 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2494 5 6 3.5652 -0.7421 -1.2407 6 6 4.0892 -1.4370 0.0113 7 6 3.5702 -0.7120 1.2556 8 6 4.0795 -1.4240 2.5104 9 6 4.0715 0.7334 1.2503 10 6 2.0402 -0.7217 1.2490 11 7 4.0988 0.6227 -1.3340 12 6 4.8171 0.6739 -2.4722 13 8 5.4052 1.6659 -2.8562 14 7 4.8156 -0.4920 -3.1298 15 6 5.5147 -0.7240 -4.3961 16 6 6.9143 -1.2073 -4.1160 17 8 7.2907 -1.3440 -2.9720 18 8 7.7450 -1.4856 -5.1342 19 6 8.9836 -1.9144 -4.8143 20 1 9.2677 -2.0196 -3.7777 21 6 9.8926 -2.2193 -5.8173 22 7 9.5470 -2.0908 -7.0789 23 14 11.6079 -2.8123 -5.3745 24 1 11.5096 -4.0668 -4.5859 25 1 12.3791 -3.0686 -6.6174 26 1 12.2980 -1.7736 -4.5685 27 6 4.0904 -1.4270 -2.4817 28 8 3.8998 -2.5746 -2.8228 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6896 -0.2001 -2.1395 33 1 1.6643 -1.7451 -1.2568 34 1 3.7449 -2.4711 0.0235 35 1 5.1791 -1.4177 0.0080 36 1 5.1695 -1.4178 2.5146 37 1 3.7096 -0.9080 3.3964 38 1 3.7221 -2.4537 2.5143 39 1 3.3793 1.3560 0.6833 40 1 4.1343 1.1001 2.2748 41 1 5.0582 0.7742 0.7888 42 1 1.6836 -1.7517 1.2446 43 1 1.6700 -0.2130 2.1392 44 1 3.9612 1.3447 -0.7009 45 1 4.9791 -1.4769 -4.9742 46 1 5.5580 0.2062 -4.9628 47 1 10.1824 -2.3043 -7.7800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021973234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:00 Heat of formation + Delta-G solvation = -119.963078 kcal Electronic energy + Delta-G solvation = -31456.300207 eV Core-core repulsion = 27219.614343 eV Total energy + Delta-G solvation = -4236.685864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83411 -39.78212 -38.79879 -38.42981 -35.82518 -35.43201 -34.49991 -34.15685 -32.15923 -30.78213 -28.99656 -27.56299 -26.98345 -26.87772 -25.27527 -24.12194 -22.33071 -21.00435 -20.89866 -19.79536 -19.03721 -17.79907 -17.73551 -17.17060 -16.42245 -16.05667 -15.70252 -15.59028 -15.31304 -15.00305 -14.71039 -14.55433 -14.45769 -14.29765 -14.18908 -13.75501 -13.68806 -13.25363 -13.01703 -12.52676 -12.37262 -12.34319 -12.21199 -12.16401 -11.95368 -11.75541 -11.63701 -11.55933 -11.25047 -11.16369 -11.11471 -10.75542 -10.57727 -10.46202 -10.42978 -10.39817 -10.04558 -9.85896 -9.79363 -9.38173 -8.95192 -8.58012 -6.41261 -4.09247 1.74388 2.24617 3.09356 3.12514 3.18236 3.20741 3.25108 3.46423 3.84060 3.98282 4.15249 4.21782 4.46278 4.52623 4.54565 4.58856 4.78755 4.87735 4.97659 5.06455 5.13883 5.22354 5.26514 5.27492 5.37252 5.39873 5.46058 5.51655 5.52011 5.52876 5.61947 5.66713 5.69559 5.72163 5.77479 5.82711 5.88387 5.92898 5.99000 6.07237 6.13202 6.62506 6.81763 7.18573 7.37994 7.49194 7.93429 8.25273 8.65551 9.06712 9.78871 10.76284 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.003069 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.076726 B = 9121.658484 C = 9556.270891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.109 4.109 5 C 0.131 3.869 6 C -0.106 4.106 7 C -0.060 4.060 8 C -0.140 4.140 9 C -0.161 4.161 10 C -0.106 4.106 11 N -0.723 5.723 12 C 0.705 3.295 13 O -0.539 6.539 14 N -0.558 5.558 15 C 0.135 3.865 16 C 0.384 3.616 17 O -0.548 6.548 18 O -0.207 6.207 19 C -0.381 4.381 20 H 0.095 0.905 21 C 0.044 3.956 22 N -0.863 5.863 23 Si 0.945 3.055 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C 0.536 3.464 28 O -0.461 6.461 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.438 0.562 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.094 4.094 16.414 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.094 0.906 4 C -0.147 4.147 5 C 0.040 3.960 6 C -0.144 4.144 7 C -0.060 4.060 8 C -0.198 4.198 9 C -0.218 4.218 10 C -0.144 4.144 11 N -0.395 5.395 12 C 0.406 3.594 13 O -0.412 6.412 14 N -0.303 5.303 15 C 0.012 3.988 16 C 0.229 3.771 17 O -0.445 6.445 18 O -0.114 6.114 19 C -0.458 4.458 20 H 0.113 0.887 21 C -0.161 4.161 22 N -0.500 5.500 23 Si 0.770 3.230 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.194 1.194 27 C 0.323 3.677 28 O -0.330 6.330 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.291 0.709 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.615 3.910 15.968 24.835 hybrid contribution 0.948 -0.005 0.324 1.002 sum -17.667 3.905 16.292 24.347 Atomic orbital electron populations 1.21801 0.94427 1.02176 1.01908 1.21214 0.95991 0.99800 0.94110 0.90611 1.21755 0.90487 1.03132 0.99347 1.20980 0.96287 0.83328 0.95358 1.21813 1.02118 0.99655 0.90840 1.20510 0.95316 0.95484 0.94712 1.21863 1.01525 1.00284 0.96086 1.22382 1.01674 0.95414 1.02290 1.21734 0.94000 1.01228 0.97411 1.46464 1.54767 1.13623 1.24631 1.15963 0.79555 0.82912 0.80943 1.91007 1.47076 1.32746 1.70353 1.45963 1.47318 1.12886 1.24160 1.20827 0.89880 1.05227 0.82877 1.23126 0.88322 0.80571 0.85068 1.90559 1.77146 1.53740 1.23079 1.83849 1.23638 1.69215 1.34660 1.21174 0.85135 1.44601 0.94844 0.88718 1.25341 0.99767 0.96525 0.94454 1.69979 1.36053 1.44963 0.98990 0.85719 0.79955 0.79428 0.77925 1.19454 1.20291 1.19445 1.20631 0.77285 0.85345 0.84477 1.90787 1.57479 1.14783 1.69955 0.92416 0.92489 0.92365 0.90627 0.89185 0.89304 0.89944 0.92211 0.92366 0.92355 0.92032 0.91926 0.91268 0.91222 0.91357 0.70948 0.85781 0.85569 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.20 37.16 0.34 -0.45 16 2 C -0.09 -0.60 2.39 -90.57 -0.22 -0.81 16 3 H 0.08 0.48 5.57 -51.93 -0.29 0.19 16 4 C -0.11 -0.94 4.26 -26.96 -0.11 -1.05 16 5 C 0.13 1.53 0.82 -133.10 -0.11 1.42 16 6 C -0.11 -1.13 3.78 -26.96 -0.10 -1.24 16 7 C -0.06 -0.46 0.77 -154.47 -0.12 -0.58 16 8 C -0.14 -1.01 8.33 37.16 0.31 -0.70 16 9 C -0.16 -1.21 7.04 37.15 0.26 -0.95 16 10 C -0.11 -0.66 4.00 -26.72 -0.11 -0.76 16 11 N -0.72 -8.84 4.33 -53.87 -0.23 -9.07 16 12 C 0.71 12.04 8.63 -87.81 -0.76 11.28 16 13 O -0.54 -11.00 17.49 5.33 0.09 -10.91 16 14 N -0.56 -9.89 2.10 -122.09 -0.26 -10.15 16 15 C 0.13 2.61 6.30 -5.19 -0.03 2.58 16 16 C 0.38 9.89 7.97 36.01 0.29 10.18 16 17 O -0.55 -15.30 15.67 -19.05 -0.30 -15.59 16 18 O -0.21 -6.08 9.75 -20.73 -0.20 -6.29 16 19 C -0.38 -11.57 9.65 30.92 0.30 -11.28 16 20 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 21 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 22 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 23 Si 0.95 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.54 8.65 6.94 -10.70 -0.07 8.57 16 28 O -0.46 -8.44 17.77 5.60 0.10 -8.34 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.40 3.70 -51.93 -0.19 0.21 16 40 H 0.06 0.40 7.86 -51.93 -0.41 0.00 16 41 H 0.07 0.66 7.02 -51.93 -0.36 0.30 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.44 4.34 4.76 -40.82 -0.19 4.14 16 45 H 0.12 2.12 8.01 -51.93 -0.42 1.70 16 46 H 0.13 2.24 7.87 -51.93 -0.41 1.83 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -36.80 374.79 -6.48 -43.28 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.84 Total: 2.17 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: -0.23 Total: 17.36 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.27 Total: -44.06 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.31 Total: -41.13 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.80 -6.48 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.682 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds