Wall clock time and date at job start Tue Mar 31 2020 21:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.48225 * 2 1 4 4 C 1.53081 * 109.48775 * 239.97164 * 2 1 3 5 5 C 1.52470 * 109.57670 * 180.86166 * 4 2 1 6 6 C 1.52476 * 110.74821 * 58.58785 * 5 4 2 7 7 C 1.53081 * 109.57918 * 301.41486 * 6 5 4 8 8 C 1.52995 * 109.47795 * 179.12747 * 7 6 5 9 9 C 1.52993 * 109.48180 * 299.14766 * 7 6 5 10 10 C 1.53007 * 109.42012 * 59.14285 * 7 6 5 11 11 N 1.46832 * 110.53911 * 295.72621 * 5 4 2 12 12 C 1.34686 * 106.42988 * 241.49381 * 11 5 4 13 13 O 1.21541 * 123.78771 * 180.26470 * 12 11 5 14 14 N 1.33862 * 112.42071 * 359.97438 * 12 11 5 15 15 C 1.46499 * 124.19569 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46967 * 89.97562 * 15 14 12 17 17 O 1.21204 * 120.00079 * 359.97438 * 16 15 14 18 18 O 1.34319 * 119.99246 * 180.02562 * 16 15 14 19 19 C 1.34921 * 116.99180 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00250 * 359.97438 * 19 18 16 21 21 C 1.38757 * 119.99496 * 180.02562 * 19 18 16 22 22 N 1.31437 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99721 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47040 * 60.00154 * 23 21 19 25 25 H 1.48502 * 109.46760 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47243 * 299.99797 * 23 21 19 27 27 C 1.34909 * 111.60817 * 0.02562 * 14 12 11 28 28 O 1.21236 * 127.25592 * 179.97438 * 27 14 12 29 29 H 1.09002 * 109.47180 * 299.98005 * 1 2 3 30 30 H 1.09005 * 109.46903 * 59.97692 * 1 2 3 31 31 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.45335 * 60.82993 * 4 2 1 33 33 H 1.08997 * 109.45411 * 300.89310 * 4 2 1 34 34 H 1.08998 * 109.45097 * 61.44989 * 6 5 4 35 35 H 1.09003 * 109.45391 * 181.38428 * 6 5 4 36 36 H 1.09003 * 109.47278 * 60.00202 * 8 7 6 37 37 H 1.08999 * 109.47239 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47301 * 300.00442 * 8 7 6 39 39 H 1.09001 * 109.47038 * 86.89299 * 9 7 6 40 40 H 1.08997 * 109.47588 * 206.89419 * 9 7 6 41 41 H 1.09004 * 109.47543 * 326.89461 * 9 7 6 42 42 H 1.09003 * 109.46227 * 59.55082 * 10 7 6 43 43 H 1.09002 * 109.45858 * 179.51901 * 10 7 6 44 44 H 0.97004 * 126.78450 * 61.49317 * 11 5 4 45 45 H 1.08997 * 109.47179 * 209.97967 * 15 14 12 46 46 H 1.09005 * 109.46662 * 329.97535 * 15 14 12 47 47 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2494 5 6 3.5652 -0.7421 -1.2407 6 6 4.0892 -1.4370 0.0113 7 6 3.5702 -0.7120 1.2556 8 6 4.0795 -1.4240 2.5104 9 6 4.0715 0.7334 1.2503 10 6 2.0402 -0.7217 1.2490 11 7 4.0988 0.6227 -1.3340 12 6 4.8171 0.6739 -2.4722 13 8 5.4052 1.6659 -2.8562 14 7 4.8156 -0.4920 -3.1298 15 6 5.5147 -0.7240 -4.3961 16 6 6.9143 -1.2073 -4.1160 17 8 7.2907 -1.3440 -2.9720 18 8 7.7450 -1.4856 -5.1342 19 6 8.9836 -1.9144 -4.8143 20 1 9.2677 -2.0196 -3.7777 21 6 9.8926 -2.2193 -5.8173 22 7 9.5470 -2.0908 -7.0789 23 14 11.6079 -2.8123 -5.3745 24 1 11.5096 -4.0668 -4.5859 25 1 12.3791 -3.0686 -6.6174 26 1 12.2980 -1.7736 -4.5685 27 6 4.0904 -1.4270 -2.4817 28 8 3.8998 -2.5746 -2.8228 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6896 -0.2001 -2.1395 33 1 1.6643 -1.7451 -1.2568 34 1 3.7449 -2.4711 0.0235 35 1 5.1791 -1.4177 0.0080 36 1 5.1695 -1.4178 2.5146 37 1 3.7096 -0.9080 3.3964 38 1 3.7221 -2.4537 2.5143 39 1 3.3793 1.3560 0.6833 40 1 4.1343 1.1001 2.2748 41 1 5.0582 0.7742 0.7888 42 1 1.6836 -1.7517 1.2446 43 1 1.6700 -0.2130 2.1392 44 1 3.9612 1.3447 -0.7009 45 1 4.9791 -1.4769 -4.9742 46 1 5.5580 0.2062 -4.9628 47 1 10.1824 -2.3043 -7.7800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021973234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:59 Heat of formation + Delta-G solvation = -143.949399 kcal Electronic energy + Delta-G solvation = -31457.340332 eV Core-core repulsion = 27219.614343 eV Total energy + Delta-G solvation = -4237.725989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.05516 -41.21140 -40.40092 -39.81760 -37.52764 -37.11547 -35.61069 -35.05524 -34.38717 -31.74524 -30.53671 -28.33811 -27.59198 -27.46518 -27.37713 -25.37548 -23.72511 -22.44975 -21.65478 -21.16739 -20.03943 -19.90054 -19.08192 -18.82626 -17.72242 -17.59633 -17.06618 -16.78306 -16.69317 -16.43545 -16.18129 -16.08042 -15.89650 -15.44688 -15.21473 -14.88927 -14.54512 -14.36791 -13.96930 -13.92381 -13.69785 -13.65718 -13.13581 -13.05898 -12.89059 -12.84649 -12.61237 -12.44299 -12.41679 -12.30478 -12.23857 -12.19169 -12.13310 -11.84490 -11.79206 -11.72023 -11.27239 -11.08062 -10.92092 -10.89559 -10.76394 -10.44733 -8.60476 -6.41531 0.42497 0.86386 1.19686 1.30712 1.46795 1.52947 1.73211 2.02179 2.11196 2.63560 2.76163 2.90153 3.32884 3.44638 3.71605 3.79385 3.85365 3.94358 3.99157 4.11689 4.12934 4.22469 4.35342 4.40955 4.55136 4.57579 4.59425 4.75860 4.77202 4.78500 4.90043 4.93103 4.95679 5.00464 5.07058 5.09475 5.15467 5.19860 5.29392 5.40147 5.43258 5.50735 5.58024 5.67802 5.74251 5.87545 6.18513 6.49266 6.82808 6.94669 7.59407 8.59488 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.003069 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.076726 B = 9121.658484 C = 9556.270891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.105 4.105 5 C 0.142 3.858 6 C -0.105 4.105 7 C -0.054 4.054 8 C -0.140 4.140 9 C -0.162 4.162 10 C -0.102 4.102 11 N -0.696 5.696 12 C 0.699 3.301 13 O -0.578 6.578 14 N -0.566 5.566 15 C 0.142 3.858 16 C 0.380 3.620 17 O -0.576 6.576 18 O -0.233 6.233 19 C -0.425 4.425 20 H 0.080 0.920 21 C 0.000 4.000 22 N -0.897 5.897 23 Si 1.019 2.981 24 H -0.261 1.261 25 H -0.255 1.255 26 H -0.263 1.263 27 C 0.526 3.474 28 O -0.487 6.487 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.450 0.550 45 H 0.149 0.851 46 H 0.144 0.856 47 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 4.283 18.202 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.143 4.143 5 C 0.052 3.948 6 C -0.144 4.144 7 C -0.054 4.054 8 C -0.197 4.197 9 C -0.219 4.219 10 C -0.139 4.139 11 N -0.368 5.368 12 C 0.400 3.600 13 O -0.454 6.454 14 N -0.312 5.312 15 C 0.019 3.981 16 C 0.227 3.773 17 O -0.474 6.474 18 O -0.140 6.140 19 C -0.501 4.501 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.534 5.534 23 Si 0.837 3.163 24 H -0.186 1.186 25 H -0.178 1.178 26 H -0.187 1.187 27 C 0.315 3.685 28 O -0.357 6.357 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.306 0.694 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.204 4.108 17.798 27.237 hybrid contribution 1.364 -0.079 -0.199 1.381 sum -18.840 4.030 17.598 26.094 Atomic orbital electron populations 1.21772 0.93078 1.02594 1.02551 1.21222 0.96972 0.99643 0.92797 0.90086 1.21839 0.87311 1.04141 1.01043 1.21148 0.98394 0.82029 0.93276 1.21858 1.00175 1.00420 0.91938 1.20505 0.96742 0.95060 0.93112 1.21864 1.00576 1.00784 0.96458 1.22387 1.00477 0.95620 1.03435 1.21732 0.92103 1.01957 0.98093 1.46436 1.53122 1.14363 1.22920 1.16163 0.79775 0.82192 0.81839 1.90975 1.48946 1.33900 1.71567 1.46139 1.47252 1.13772 1.24019 1.20885 0.86345 1.06457 0.84438 1.24376 0.89933 0.78784 0.84236 1.90521 1.78195 1.54579 1.24090 1.83866 1.23952 1.70150 1.36074 1.21382 0.86457 1.47390 0.94858 0.90275 1.26571 1.04026 0.95524 0.94030 1.70053 1.38107 1.45081 1.00113 0.84685 0.73870 0.79064 0.78700 1.18561 1.17846 1.18711 1.21472 0.76609 0.85002 0.85413 1.90762 1.58394 1.15757 1.70816 0.91127 0.92561 0.92096 0.90328 0.88534 0.88933 0.93203 0.93802 0.90414 0.91990 0.90786 0.90101 0.93843 0.90643 0.89212 0.69382 0.83369 0.83818 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 71.98 0.66 -0.37 16 2 C -0.09 -0.84 2.39 -10.76 -0.03 -0.87 16 3 H 0.08 0.72 5.57 -2.38 -0.01 0.71 16 4 C -0.10 -1.59 4.26 30.45 0.13 -1.46 16 5 C 0.14 3.21 0.82 2.59 0.00 3.21 16 6 C -0.11 -2.23 3.78 30.45 0.12 -2.11 16 7 C -0.05 -0.73 0.77 -52.16 -0.04 -0.77 16 8 C -0.14 -1.74 8.33 71.98 0.60 -1.14 16 9 C -0.16 -2.14 7.04 71.98 0.51 -1.63 16 10 C -0.10 -0.89 4.00 30.60 0.12 -0.77 16 11 N -0.70 -16.71 4.33 -442.69 -1.92 -18.62 16 12 C 0.70 24.27 8.63 179.37 1.55 25.82 16 13 O -0.58 -24.16 17.49 -3.85 -0.07 -24.23 16 14 N -0.57 -20.54 2.10 -777.29 -1.63 -22.17 16 15 C 0.14 5.67 6.30 85.63 0.54 6.21 16 16 C 0.38 20.45 7.97 71.24 0.57 21.01 16 17 O -0.58 -33.71 15.67 20.79 0.33 -33.38 16 18 O -0.23 -14.30 9.75 14.78 0.14 -14.16 16 19 C -0.43 -26.84 9.65 67.94 0.66 -26.19 16 20 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 21 C 0.00 -0.02 5.49 84.88 0.47 0.44 16 22 N -0.90 -53.90 13.67 21.62 0.30 -53.61 16 23 Si 1.02 44.62 29.55 68.60 2.03 46.64 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 27 C 0.53 17.21 6.94 87.78 0.61 17.81 16 28 O -0.49 -18.13 17.77 -2.89 -0.05 -18.18 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.69 8.11 -2.39 -0.02 0.67 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.77 3.70 -2.39 -0.01 0.76 16 40 H 0.08 0.82 7.86 -2.39 -0.02 0.80 16 41 H 0.04 0.81 7.02 -2.38 -0.02 0.80 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.45 8.39 4.76 -92.71 -0.44 7.95 16 45 H 0.15 5.15 8.01 -2.39 -0.02 5.13 16 46 H 0.14 5.21 7.87 -2.38 -0.02 5.20 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -83.78 374.79 6.15 -77.64 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.56 Total: 20.86 kcal Atomic # 6 Polarization: 32.74 SS G_CDS: 6.46 Total: 39.20 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.25 Total: -94.40 kcal Atomic # 8 Polarization: -90.30 SS G_CDS: 0.35 Total: -89.95 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -83.78 6.15 -77.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.313 kcal (2) G-P(sol) polarization free energy of solvation -83.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds