Wall clock time and date at job start Tue Mar 31 2020 21:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08999 * 109.47906 * 2 1 4 4 C 1.53088 * 109.47808 * 120.03531 * 2 1 3 5 5 C 1.52471 * 109.52075 * 179.14697 * 4 2 1 6 6 C 1.52471 * 110.72897 * 301.25394 * 5 4 2 7 7 C 1.53097 * 109.52087 * 58.75038 * 6 5 4 8 8 C 1.52995 * 109.47780 * 60.81262 * 7 6 5 9 9 C 1.53004 * 109.47995 * 180.84845 * 7 6 5 10 10 C 1.52995 * 109.47777 * 239.98433 * 2 1 3 11 11 N 1.46849 * 110.49255 * 63.99828 * 5 4 2 12 12 C 1.34671 * 106.41768 * 118.55979 * 11 5 4 13 13 O 1.21543 * 123.79218 * 180.02562 * 12 11 5 14 14 N 1.33865 * 112.42529 * 0.02562 * 12 11 5 15 15 C 1.46500 * 124.19865 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47351 * 90.02018 * 15 14 12 17 17 O 1.21211 * 119.99619 * 0.02562 * 16 15 14 18 18 O 1.34315 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.34916 * 116.99995 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.38753 * 120.00229 * 180.02562 * 19 18 16 22 22 N 1.31443 * 119.99583 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00393 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46970 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46998 * 119.99718 * 23 21 19 26 26 H 1.48496 * 109.46963 * 239.99855 * 23 21 19 27 27 C 1.34920 * 111.60704 * 0.22138 * 14 12 11 28 28 O 1.21236 * 127.25304 * 179.76534 * 27 14 12 29 29 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47042 * 300.02213 * 1 2 3 31 31 H 1.09005 * 109.46882 * 60.01679 * 1 2 3 32 32 H 1.08999 * 109.46481 * 59.13038 * 4 2 1 33 33 H 1.09007 * 109.46343 * 299.16139 * 4 2 1 34 34 H 1.09000 * 109.46661 * 178.76923 * 6 5 4 35 35 H 1.09007 * 109.46187 * 298.73821 * 6 5 4 36 36 H 1.08999 * 109.47250 * 32.57952 * 8 7 6 37 37 H 1.09007 * 109.47095 * 152.57440 * 8 7 6 38 38 H 1.09000 * 109.47358 * 272.57231 * 8 7 6 39 39 H 1.08999 * 109.46915 * 60.00274 * 9 7 6 40 40 H 1.08994 * 109.46692 * 180.02562 * 9 7 6 41 41 H 1.09000 * 109.46842 * 300.00157 * 9 7 6 42 42 H 1.08998 * 109.45857 * 59.58134 * 10 2 1 43 43 H 1.09004 * 109.45813 * 299.63879 * 10 2 1 44 44 H 0.96999 * 126.79602 * 298.58716 * 11 5 4 45 45 H 1.09004 * 109.46805 * 330.02249 * 15 14 12 46 46 H 1.08994 * 109.47197 * 210.02471 * 15 14 12 47 47 H 0.97003 * 119.99563 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5651 -0.7415 1.2398 6 6 4.0882 -1.4394 -0.0109 7 6 3.5703 -0.7143 -1.2558 8 6 4.0737 0.7305 -1.2510 9 6 4.0783 -1.4279 -2.5103 10 6 2.0403 -0.7215 -1.2489 11 7 4.0970 0.6245 1.3264 12 6 4.8167 0.6814 2.4632 13 8 5.3999 1.6771 2.8450 14 7 4.8178 -0.4818 3.1257 15 6 5.5190 -0.7076 4.3920 16 6 4.6001 -0.3797 5.5406 17 8 3.4712 0.0040 5.3229 18 8 5.0322 -0.5127 6.8054 19 6 4.1598 -0.2022 7.7865 20 1 3.1646 0.1354 7.5373 21 6 4.5410 -0.3164 9.1157 22 7 5.7523 -0.7268 9.4190 23 14 3.3329 0.1129 10.4742 24 1 2.0459 0.5462 9.8733 25 1 3.1041 -1.0801 11.3284 26 1 3.8884 1.2143 11.3007 27 6 4.0973 -1.4221 2.4798 28 8 3.9135 -2.5702 2.8232 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5136 -0.8902 32 1 1.6646 -1.7455 1.2566 33 1 1.6896 -0.2004 2.1397 34 1 5.1780 -1.4222 -0.0076 35 1 3.7415 -2.4728 -0.0220 36 1 5.0563 0.7713 -0.7811 37 1 4.1460 1.0934 -2.2764 38 1 3.3774 1.3560 -0.6925 39 1 3.7191 -2.4569 -2.5135 40 1 3.7099 -0.9112 -3.3964 41 1 5.1683 -1.4235 -2.5144 42 1 1.6708 -0.2122 -2.1389 43 1 1.6822 -1.7511 -1.2453 44 1 3.9572 1.3438 0.6908 45 1 6.4006 -0.0682 4.4381 46 1 5.8239 -1.7520 4.4573 47 1 6.0187 -0.8071 10.3482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021973237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:03 Heat of formation + Delta-G solvation = -119.543252 kcal Electronic energy + Delta-G solvation = -31422.935039 eV Core-core repulsion = 27186.267380 eV Total energy + Delta-G solvation = -4236.667659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84179 -39.79623 -38.80124 -38.43282 -35.82775 -35.43279 -34.49193 -34.14807 -32.15895 -30.79979 -29.01085 -27.62096 -26.96713 -26.88060 -25.27971 -24.12352 -22.33794 -20.99121 -20.86217 -19.84276 -19.03579 -17.83200 -17.71216 -17.18268 -16.42494 -16.03259 -15.72810 -15.59980 -15.28697 -15.01783 -14.71381 -14.60531 -14.45743 -14.33763 -14.09571 -13.77870 -13.73798 -13.23980 -13.00233 -12.54674 -12.38499 -12.33829 -12.21602 -12.17935 -11.96866 -11.74775 -11.65681 -11.57815 -11.24703 -11.19833 -11.14327 -10.75809 -10.56806 -10.44582 -10.41998 -10.39632 -10.04394 -9.85599 -9.78684 -9.38623 -8.95323 -8.58756 -6.41641 -4.09393 1.74112 2.24576 3.08425 3.10851 3.17731 3.21346 3.28634 3.45834 3.83840 3.98078 4.13841 4.21489 4.45315 4.47873 4.56288 4.59577 4.78541 4.87107 4.99358 5.06804 5.13867 5.17748 5.24292 5.29149 5.34144 5.39839 5.45449 5.50204 5.51625 5.54453 5.59961 5.62884 5.64707 5.68589 5.82477 5.85185 5.87942 5.92652 5.97811 6.02233 6.13044 6.62280 6.81598 7.18458 7.38661 7.49020 7.93340 8.25168 8.65681 9.06640 9.78854 10.76053 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.003018 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.768095 B = 9275.124079 C = 9705.362119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.111 4.111 5 C 0.131 3.869 6 C -0.104 4.104 7 C -0.061 4.061 8 C -0.160 4.160 9 C -0.139 4.139 10 C -0.107 4.107 11 N -0.723 5.723 12 C 0.705 3.295 13 O -0.539 6.539 14 N -0.558 5.558 15 C 0.135 3.865 16 C 0.385 3.615 17 O -0.548 6.548 18 O -0.208 6.208 19 C -0.380 4.380 20 H 0.096 0.904 21 C 0.043 3.957 22 N -0.863 5.863 23 Si 0.944 3.056 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.536 3.464 28 O -0.461 6.461 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.438 0.562 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -1.017 -25.314 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.149 4.149 5 C 0.040 3.960 6 C -0.142 4.142 7 C -0.061 4.061 8 C -0.218 4.218 9 C -0.197 4.197 10 C -0.144 4.144 11 N -0.395 5.395 12 C 0.406 3.594 13 O -0.412 6.412 14 N -0.303 5.303 15 C 0.012 3.988 16 C 0.229 3.771 17 O -0.445 6.445 18 O -0.114 6.114 19 C -0.456 4.456 20 H 0.114 0.886 21 C -0.162 4.162 22 N -0.500 5.500 23 Si 0.769 3.231 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C 0.323 3.677 28 O -0.330 6.330 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.291 0.709 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.636 -1.070 -24.655 25.109 hybrid contribution -0.586 0.532 0.640 1.018 sum -5.222 -0.538 -24.015 24.582 Atomic orbital electron populations 1.21800 0.94367 1.02206 1.02006 1.21204 0.96162 0.99718 0.93927 0.90677 1.21760 0.90274 1.03213 0.99684 1.20979 0.96812 0.83214 0.94956 1.21815 1.01290 0.99883 0.91218 1.20523 0.95609 0.95438 0.94545 1.22384 1.01523 0.95531 1.02317 1.21862 1.01213 1.00346 0.96246 1.21734 0.93797 1.01307 0.97558 1.46482 1.54251 1.13757 1.25014 1.15962 0.79929 0.82774 0.80706 1.91007 1.48043 1.31667 1.70479 1.45961 1.48981 1.13010 1.22382 1.20826 0.94181 1.05481 0.78324 1.23128 0.87714 0.80534 0.85684 1.90564 1.21069 1.47303 1.85569 1.83846 1.43503 1.71519 1.12556 1.21275 0.95545 1.45652 0.83148 0.88613 1.25348 0.97221 0.96268 0.97324 1.70003 1.17584 1.43101 1.19269 0.85592 0.79629 0.78322 0.79575 1.18967 1.20099 1.20098 1.20623 0.76948 0.85484 0.84671 1.90786 1.56204 1.15562 1.70451 0.92369 0.92289 0.92465 0.89295 0.90019 0.90542 0.89181 0.91446 0.91921 0.91847 0.92343 0.92320 0.92401 0.91358 0.91215 0.70931 0.85569 0.85779 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.09 -0.70 2.39 -90.57 -0.22 -0.92 16 3 H 0.08 0.57 5.57 -51.93 -0.29 0.28 16 4 C -0.11 -1.19 4.28 -26.96 -0.12 -1.30 16 5 C 0.13 1.53 0.83 -133.11 -0.11 1.42 16 6 C -0.10 -0.89 3.77 -26.95 -0.10 -0.99 16 7 C -0.06 -0.39 0.77 -154.46 -0.12 -0.51 16 8 C -0.16 -1.01 7.05 37.16 0.26 -0.75 16 9 C -0.14 -0.75 8.33 37.16 0.31 -0.44 16 10 C -0.11 -0.66 4.00 -26.73 -0.11 -0.76 16 11 N -0.72 -8.83 4.29 -53.88 -0.23 -9.07 16 12 C 0.71 12.03 8.63 -87.83 -0.76 11.28 16 13 O -0.54 -11.00 17.49 5.33 0.09 -10.90 16 14 N -0.56 -9.89 2.10 -122.10 -0.26 -10.14 16 15 C 0.13 2.61 6.30 -5.19 -0.03 2.58 16 16 C 0.38 9.90 7.97 36.01 0.29 10.19 16 17 O -0.55 -15.32 15.67 -19.05 -0.30 -15.62 16 18 O -0.21 -6.10 9.75 -20.70 -0.20 -6.30 16 19 C -0.38 -11.53 9.65 30.92 0.30 -11.24 16 20 H 0.10 2.95 6.86 -52.49 -0.36 2.59 16 21 C 0.04 1.22 5.49 -17.53 -0.10 1.13 16 22 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 23 Si 0.94 21.76 29.55 -169.99 -5.02 16.73 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 C 0.54 8.64 6.95 -10.71 -0.07 8.57 16 28 O -0.46 -8.43 17.77 5.60 0.10 -8.33 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.48 6.98 -51.93 -0.36 0.12 16 37 H 0.06 0.33 7.85 -51.93 -0.41 -0.08 16 38 H 0.06 0.40 3.72 -51.93 -0.19 0.21 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.44 4.33 4.72 -40.82 -0.19 4.14 16 45 H 0.13 2.23 7.86 -51.93 -0.41 1.83 16 46 H 0.12 2.12 8.01 -51.93 -0.42 1.70 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -36.89 374.70 -6.48 -43.37 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.83 Total: 1.92 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: -0.23 Total: 17.53 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.27 Total: -44.04 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.31 Total: -41.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.89 -6.48 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.174 kcal (2) G-P(sol) polarization free energy of solvation -36.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds