Wall clock time and date at job start Tue Mar 31 2020 21:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08999 * 109.47906 * 2 1 4 4 C 1.53088 * 109.47808 * 120.03531 * 2 1 3 5 5 C 1.52471 * 109.52075 * 179.14697 * 4 2 1 6 6 C 1.52471 * 110.72897 * 301.25394 * 5 4 2 7 7 C 1.53097 * 109.52087 * 58.75038 * 6 5 4 8 8 C 1.52995 * 109.47780 * 60.81262 * 7 6 5 9 9 C 1.53004 * 109.47995 * 180.84845 * 7 6 5 10 10 C 1.52995 * 109.47777 * 239.98433 * 2 1 3 11 11 N 1.46849 * 110.49255 * 63.99828 * 5 4 2 12 12 C 1.34671 * 106.41768 * 118.55979 * 11 5 4 13 13 O 1.21543 * 123.79218 * 180.02562 * 12 11 5 14 14 N 1.33865 * 112.42529 * 0.02562 * 12 11 5 15 15 C 1.46500 * 124.19865 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47351 * 90.02018 * 15 14 12 17 17 O 1.21211 * 119.99619 * 0.02562 * 16 15 14 18 18 O 1.34315 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.34916 * 116.99995 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.38753 * 120.00229 * 180.02562 * 19 18 16 22 22 N 1.31443 * 119.99583 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00393 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46970 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46998 * 119.99718 * 23 21 19 26 26 H 1.48496 * 109.46963 * 239.99855 * 23 21 19 27 27 C 1.34920 * 111.60704 * 0.22138 * 14 12 11 28 28 O 1.21236 * 127.25304 * 179.76534 * 27 14 12 29 29 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47042 * 300.02213 * 1 2 3 31 31 H 1.09005 * 109.46882 * 60.01679 * 1 2 3 32 32 H 1.08999 * 109.46481 * 59.13038 * 4 2 1 33 33 H 1.09007 * 109.46343 * 299.16139 * 4 2 1 34 34 H 1.09000 * 109.46661 * 178.76923 * 6 5 4 35 35 H 1.09007 * 109.46187 * 298.73821 * 6 5 4 36 36 H 1.08999 * 109.47250 * 32.57952 * 8 7 6 37 37 H 1.09007 * 109.47095 * 152.57440 * 8 7 6 38 38 H 1.09000 * 109.47358 * 272.57231 * 8 7 6 39 39 H 1.08999 * 109.46915 * 60.00274 * 9 7 6 40 40 H 1.08994 * 109.46692 * 180.02562 * 9 7 6 41 41 H 1.09000 * 109.46842 * 300.00157 * 9 7 6 42 42 H 1.08998 * 109.45857 * 59.58134 * 10 2 1 43 43 H 1.09004 * 109.45813 * 299.63879 * 10 2 1 44 44 H 0.96999 * 126.79602 * 298.58716 * 11 5 4 45 45 H 1.09004 * 109.46805 * 330.02249 * 15 14 12 46 46 H 1.08994 * 109.47197 * 210.02471 * 15 14 12 47 47 H 0.97003 * 119.99563 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5651 -0.7415 1.2398 6 6 4.0882 -1.4394 -0.0109 7 6 3.5703 -0.7143 -1.2558 8 6 4.0737 0.7305 -1.2510 9 6 4.0783 -1.4279 -2.5103 10 6 2.0403 -0.7215 -1.2489 11 7 4.0970 0.6245 1.3264 12 6 4.8167 0.6814 2.4632 13 8 5.3999 1.6771 2.8450 14 7 4.8178 -0.4818 3.1257 15 6 5.5190 -0.7076 4.3920 16 6 4.6001 -0.3797 5.5406 17 8 3.4712 0.0040 5.3229 18 8 5.0322 -0.5127 6.8054 19 6 4.1598 -0.2022 7.7865 20 1 3.1646 0.1354 7.5373 21 6 4.5410 -0.3164 9.1157 22 7 5.7523 -0.7268 9.4190 23 14 3.3329 0.1129 10.4742 24 1 2.0459 0.5462 9.8733 25 1 3.1041 -1.0801 11.3284 26 1 3.8884 1.2143 11.3007 27 6 4.0973 -1.4221 2.4798 28 8 3.9135 -2.5702 2.8232 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5136 -0.8902 32 1 1.6646 -1.7455 1.2566 33 1 1.6896 -0.2004 2.1397 34 1 5.1780 -1.4222 -0.0076 35 1 3.7415 -2.4728 -0.0220 36 1 5.0563 0.7713 -0.7811 37 1 4.1460 1.0934 -2.2764 38 1 3.3774 1.3560 -0.6925 39 1 3.7191 -2.4569 -2.5135 40 1 3.7099 -0.9112 -3.3964 41 1 5.1683 -1.4235 -2.5144 42 1 1.6708 -0.2122 -2.1389 43 1 1.6822 -1.7511 -1.2453 44 1 3.9572 1.3438 0.6908 45 1 6.4006 -0.0682 4.4381 46 1 5.8239 -1.7520 4.4573 47 1 6.0187 -0.8071 10.3482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021973237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:02 Heat of formation + Delta-G solvation = -143.539880 kcal Electronic energy + Delta-G solvation = -31423.975611 eV Core-core repulsion = 27186.267380 eV Total energy + Delta-G solvation = -4237.708231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.05677 -41.21193 -40.39560 -39.81729 -37.52785 -37.10960 -35.60119 -35.07718 -34.38649 -31.74718 -30.53613 -28.28564 -27.59629 -27.47336 -27.37486 -25.37667 -23.72790 -22.44087 -21.64579 -21.20757 -20.02864 -19.90291 -19.06061 -18.84454 -17.72138 -17.60927 -16.99600 -16.78497 -16.72981 -16.44636 -16.21132 -16.02854 -15.92165 -15.46005 -15.17525 -14.88582 -14.50464 -14.38530 -13.95880 -13.91830 -13.71879 -13.67914 -13.12881 -13.05622 -12.91299 -12.82427 -12.59293 -12.44933 -12.40481 -12.31839 -12.21686 -12.20498 -12.08829 -11.85468 -11.76715 -11.72749 -11.27632 -11.08270 -10.93764 -10.87747 -10.76143 -10.44479 -8.60815 -6.41573 0.42389 0.86650 1.18329 1.31071 1.49450 1.51593 1.73368 2.02344 2.11396 2.63573 2.76280 2.89824 3.32873 3.45070 3.72190 3.80522 3.86749 3.92966 3.99162 4.11127 4.12733 4.24463 4.35515 4.42326 4.52823 4.57764 4.59938 4.70381 4.80210 4.83376 4.90005 4.92428 4.96670 5.02551 5.07669 5.13968 5.15918 5.18797 5.27697 5.40813 5.44249 5.51196 5.57018 5.68112 5.74462 5.87678 6.18548 6.49431 6.82876 6.94796 7.59510 8.59613 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.003018 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.768095 B = 9275.124079 C = 9705.362119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.110 4.110 5 C 0.142 3.858 6 C -0.100 4.100 7 C -0.055 4.055 8 C -0.163 4.163 9 C -0.136 4.136 10 C -0.102 4.102 11 N -0.696 5.696 12 C 0.699 3.301 13 O -0.578 6.578 14 N -0.566 5.566 15 C 0.142 3.858 16 C 0.381 3.619 17 O -0.576 6.576 18 O -0.234 6.234 19 C -0.423 4.423 20 H 0.079 0.921 21 C -0.001 4.001 22 N -0.897 5.897 23 Si 1.020 2.980 24 H -0.267 1.267 25 H -0.256 1.256 26 H -0.257 1.257 27 C 0.527 3.473 28 O -0.487 6.487 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.451 0.549 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 -1.079 -27.362 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.149 4.149 5 C 0.051 3.949 6 C -0.139 4.139 7 C -0.055 4.055 8 C -0.220 4.220 9 C -0.193 4.193 10 C -0.139 4.139 11 N -0.369 5.369 12 C 0.400 3.600 13 O -0.454 6.454 14 N -0.312 5.312 15 C 0.019 3.981 16 C 0.227 3.773 17 O -0.474 6.474 18 O -0.141 6.141 19 C -0.499 4.499 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.534 5.534 23 Si 0.838 3.162 24 H -0.191 1.191 25 H -0.180 1.180 26 H -0.181 1.181 27 C 0.315 3.685 28 O -0.357 6.357 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.307 0.693 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.515 -1.142 -26.775 27.361 hybrid contribution -0.314 0.519 1.211 1.354 sum -5.829 -0.623 -25.564 26.227 Atomic orbital electron populations 1.21797 0.93783 1.02524 1.02186 1.21206 0.96600 0.99604 0.93039 0.90415 1.21804 0.89229 1.03599 1.00243 1.21142 0.97331 0.82241 0.94147 1.21903 1.01449 1.00142 0.90358 1.20513 0.95865 0.95334 0.93816 1.22401 1.00848 0.95414 1.03381 1.21836 1.01182 1.00544 0.95787 1.21729 0.93318 1.01697 0.97158 1.46484 1.52420 1.14582 1.23410 1.16166 0.80200 0.82037 0.81578 1.90975 1.49943 1.32786 1.71684 1.46137 1.49367 1.13928 1.21766 1.20881 0.93217 1.07190 0.76828 1.24375 0.88264 0.78640 0.86012 1.90524 1.22718 1.48231 1.85923 1.83863 1.43924 1.72455 1.13839 1.21448 0.95577 1.48352 0.84522 0.90320 1.26576 0.99421 0.95028 0.99184 1.70071 1.19358 1.43161 1.20766 0.84556 0.76638 0.79160 0.75865 1.19129 1.17999 1.18135 1.21459 0.76174 0.85142 0.85696 1.90762 1.56927 1.16602 1.71420 0.92026 0.93794 0.90608 0.88878 0.93144 0.90375 0.88494 0.92433 0.90094 0.91971 0.91983 0.90979 0.92515 0.89286 0.90615 0.69344 0.83827 0.83374 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.20 71.99 0.66 -1.16 16 2 C -0.09 -1.15 2.39 -10.76 -0.03 -1.18 16 3 H 0.08 1.02 5.57 -2.39 -0.01 1.00 16 4 C -0.11 -2.31 4.28 30.45 0.13 -2.18 16 5 C 0.14 3.21 0.83 2.58 0.00 3.21 16 6 C -0.10 -1.54 3.77 30.45 0.11 -1.43 16 7 C -0.06 -0.54 0.77 -52.15 -0.04 -0.59 16 8 C -0.16 -1.59 7.05 71.98 0.51 -1.09 16 9 C -0.14 -0.99 8.33 71.98 0.60 -0.39 16 10 C -0.10 -0.91 4.00 30.59 0.12 -0.79 16 11 N -0.70 -16.72 4.29 -442.72 -1.90 -18.62 16 12 C 0.70 24.25 8.63 179.37 1.55 25.80 16 13 O -0.58 -24.13 17.49 -3.85 -0.07 -24.20 16 14 N -0.57 -20.53 2.10 -777.32 -1.63 -22.16 16 15 C 0.14 5.67 6.30 85.63 0.54 6.21 16 16 C 0.38 20.45 7.97 71.24 0.57 21.02 16 17 O -0.58 -33.73 15.67 20.77 0.33 -33.40 16 18 O -0.23 -14.32 9.75 14.88 0.14 -14.17 16 19 C -0.42 -26.72 9.65 67.94 0.66 -26.06 16 20 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 21 C 0.00 -0.07 5.49 84.87 0.47 0.40 16 22 N -0.90 -53.81 13.67 21.62 0.30 -53.52 16 23 Si 1.02 44.64 29.55 68.60 2.03 46.66 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 C 0.53 17.19 6.95 87.77 0.61 17.80 16 28 O -0.49 -18.08 17.77 -2.89 -0.05 -18.14 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 0.70 6.98 -2.39 -0.02 0.69 16 37 H 0.08 0.55 7.85 -2.38 -0.02 0.53 16 38 H 0.06 0.62 3.72 -2.39 -0.01 0.61 16 39 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.38 8.11 -2.39 -0.02 0.36 16 41 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.45 8.43 4.72 -92.71 -0.44 7.99 16 45 H 0.14 5.21 7.86 -2.38 -0.02 5.19 16 46 H 0.15 5.14 8.01 -2.39 -0.02 5.12 16 47 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -83.63 374.70 6.17 -77.47 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.56 Total: 20.49 kcal Atomic # 6 Polarization: 33.12 SS G_CDS: 6.46 Total: 39.58 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.24 Total: -94.30 kcal Atomic # 8 Polarization: -90.26 SS G_CDS: 0.35 Total: -89.91 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -83.63 6.17 -77.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.074 kcal (2) G-P(sol) polarization free energy of solvation -83.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds