Wall clock time and date at job start Tue Mar 31 2020 21:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53190 * 1 3 3 H 1.08662 * 109.24051 * 2 1 4 4 C 1.53060 * 109.24493 * 239.65013 * 2 1 3 5 5 C 1.52302 * 109.54402 * 177.75373 * 4 2 1 6 6 C 1.51579 * 112.77191 * 54.59503 * 5 4 2 7 7 C 1.51872 * 115.54826 * 315.33362 * 6 5 4 8 8 C 1.53143 * 110.73505 * 278.61434 * 7 6 5 9 9 C 1.54451 * 107.98419 * 161.33923 * 7 6 5 10 10 C 1.52411 * 112.82423 * 42.45493 * 7 6 5 11 11 N 1.48027 * 108.70591 * 175.02255 * 5 4 2 12 12 C 1.34401 * 106.49103 * 125.65471 * 11 5 4 13 13 O 1.21596 * 123.89656 * 175.09484 * 12 11 5 14 14 N 1.33737 * 112.31839 * 355.22215 * 12 11 5 15 15 C 1.46470 * 124.37027 * 179.03407 * 14 12 11 16 16 C 1.50704 * 109.46944 * 270.04198 * 15 14 12 17 17 O 1.21211 * 120.00032 * 0.02562 * 16 15 14 18 18 O 1.34315 * 119.99855 * 179.97438 * 16 15 14 19 19 C 1.34919 * 116.99610 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38758 * 119.99761 * 180.02562 * 19 18 16 22 22 N 1.31447 * 119.99639 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47089 * 90.00245 * 23 21 19 25 25 H 1.48506 * 109.47237 * 209.99856 * 23 21 19 26 26 H 1.48498 * 109.47309 * 329.99856 * 23 21 19 27 27 C 1.35091 * 111.47944 * 359.07297 * 14 12 11 28 28 O 1.21265 * 125.95275 * 187.22273 * 27 14 12 29 29 H 1.09000 * 109.47012 * 298.95292 * 1 2 3 30 30 H 1.09002 * 109.47337 * 58.94921 * 1 2 3 31 31 H 1.09003 * 109.47676 * 178.95046 * 1 2 3 32 32 H 1.09031 * 109.44757 * 297.87489 * 4 2 1 33 33 H 1.09047 * 109.41412 * 57.68221 * 4 2 1 34 34 H 1.10079 * 108.58278 * 77.86203 * 6 5 4 35 35 H 1.10148 * 108.48054 * 193.03573 * 6 5 4 36 36 H 1.09006 * 109.47321 * 185.42284 * 8 7 6 37 37 H 1.08991 * 109.47511 * 305.42511 * 8 7 6 38 38 H 1.08999 * 109.47235 * 65.42809 * 8 7 6 39 39 H 1.08999 * 109.47351 * 297.89396 * 9 7 6 40 40 H 1.09005 * 109.47353 * 57.89032 * 9 7 6 41 41 H 1.08997 * 109.47801 * 177.89048 * 9 7 6 42 42 H 1.09342 * 109.40539 * 188.40016 * 10 7 6 43 43 H 1.09352 * 109.40014 * 69.73709 * 10 7 6 44 44 H 0.96805 * 125.96568 * 305.70627 * 11 5 4 45 45 H 1.08994 * 109.47101 * 30.04245 * 15 14 12 46 46 H 1.09002 * 109.47118 * 150.04425 * 15 14 12 47 47 H 0.96998 * 119.99502 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5319 0.0000 0.0000 3 1 1.8900 1.0259 0.0000 4 6 2.0364 -0.7302 -1.2470 5 6 3.5583 -0.6858 -1.2826 6 6 4.1908 -1.2253 -0.0152 7 6 3.5619 -0.7518 1.2836 8 6 4.0827 0.6374 1.6632 9 6 3.9892 -1.7259 2.4034 10 6 2.0386 -0.7430 1.2341 11 7 4.0303 -1.4976 -2.4269 12 6 4.8243 -0.6984 -3.1599 13 8 5.4517 -1.0728 -4.1319 14 7 4.8485 0.5561 -2.6972 15 6 5.6423 1.6385 -3.2834 16 6 7.0013 1.6738 -2.6331 17 8 7.2793 0.8736 -1.7661 18 8 7.9049 2.5913 -3.0149 19 6 9.1020 2.5678 -2.3930 20 1 9.2980 1.8327 -1.6264 21 6 10.0814 3.4880 -2.7385 22 7 9.8427 4.3829 -3.6712 23 14 11.7391 3.4549 -1.8781 24 1 12.6651 2.5634 -2.6218 25 1 12.3021 4.8285 -1.8353 26 1 11.5680 2.9467 -0.4933 27 6 4.0483 0.7009 -1.6184 28 8 3.7781 1.7470 -1.0677 29 1 -0.3633 0.4975 0.8992 30 1 -0.3634 0.5301 -0.8804 31 1 -0.3634 -1.0275 -0.0188 32 1 1.7022 -1.7677 -1.2203 33 1 1.6368 -0.2446 -2.1379 34 1 4.1556 -2.3251 -0.0462 35 1 5.2572 -0.9494 -0.0122 36 1 3.6941 0.9160 2.6428 37 1 5.1720 0.6207 1.6959 38 1 3.7526 1.3645 0.9213 39 1 3.6113 -2.7238 2.1807 40 1 5.0772 -1.7548 2.4644 41 1 3.5809 -1.3869 3.3554 42 1 1.6488 -0.2563 2.1322 43 1 1.6700 -1.7722 1.2106 44 1 3.8022 -2.4223 -2.6005 45 1 5.7560 1.4670 -4.3537 46 1 5.1363 2.5900 -3.1195 47 1 10.5275 5.0259 -3.9129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021973239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:05 Heat of formation + Delta-G solvation = -135.047163 kcal Electronic energy + Delta-G solvation = -31676.243596 eV Core-core repulsion = 27438.903637 eV Total energy + Delta-G solvation = -4237.339959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72831 -39.54022 -38.86192 -38.17078 -36.05532 -35.51142 -34.55999 -34.14775 -32.17189 -30.34594 -28.83073 -27.22156 -26.95821 -26.67189 -25.31575 -24.11624 -22.30465 -21.40752 -20.71042 -19.88332 -18.50504 -17.88181 -17.77817 -17.17934 -16.44918 -15.93828 -15.58278 -15.39804 -15.36434 -14.89439 -14.72485 -14.59515 -14.41836 -14.29767 -14.05919 -14.03529 -13.37459 -13.17311 -12.74799 -12.48291 -12.38083 -12.26550 -12.22301 -11.96269 -11.91545 -11.70636 -11.62304 -11.44054 -11.14783 -11.03608 -10.89089 -10.55125 -10.46188 -10.42119 -10.40346 -10.36387 -10.02583 -9.89483 -9.79386 -9.44673 -8.96140 -8.59551 -6.42715 -4.10646 1.72479 2.20046 3.04816 3.09692 3.14207 3.19994 3.25705 3.44494 3.81793 3.98503 4.24775 4.30222 4.54582 4.55292 4.66505 4.72379 4.93796 5.02395 5.06499 5.11062 5.22713 5.32172 5.39535 5.40358 5.44734 5.49927 5.52463 5.56500 5.61250 5.66080 5.72845 5.81288 5.83021 5.88006 5.92677 5.94026 5.99959 6.15934 6.20769 6.27109 6.52430 6.61337 6.80696 7.14399 7.36968 7.48901 7.91926 8.22925 8.63891 9.05379 9.77338 10.74856 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.003461 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.245608 B = 8088.125670 C = 8746.609474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.104 4.104 5 C 0.139 3.861 6 C -0.106 4.106 7 C -0.053 4.053 8 C -0.160 4.160 9 C -0.144 4.144 10 C -0.100 4.100 11 N -0.728 5.728 12 C 0.710 3.290 13 O -0.539 6.539 14 N -0.560 5.560 15 C 0.135 3.865 16 C 0.384 3.616 17 O -0.549 6.549 18 O -0.207 6.207 19 C -0.381 4.381 20 H 0.096 0.904 21 C 0.043 3.957 22 N -0.862 5.862 23 Si 0.945 3.055 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C 0.539 3.461 28 O -0.455 6.455 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.436 0.564 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.428 -11.046 8.120 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.143 4.143 5 C 0.049 3.951 6 C -0.144 4.144 7 C -0.054 4.054 8 C -0.217 4.217 9 C -0.202 4.202 10 C -0.137 4.137 11 N -0.393 5.393 12 C 0.411 3.589 13 O -0.412 6.412 14 N -0.306 5.306 15 C 0.013 3.987 16 C 0.229 3.771 17 O -0.446 6.446 18 O -0.113 6.113 19 C -0.457 4.457 20 H 0.113 0.887 21 C -0.161 4.161 22 N -0.499 5.499 23 Si 0.769 3.231 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C 0.326 3.674 28 O -0.323 6.323 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.280 0.720 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.944 -10.585 7.945 23.109 hybrid contribution 0.963 -0.487 0.253 1.108 sum -17.981 -11.072 8.197 22.651 Atomic orbital electron populations 1.21833 0.94663 1.01654 1.01973 1.21189 0.95745 1.01273 0.93622 0.88812 1.21683 0.90213 1.02596 0.99780 1.20923 0.96930 0.88349 0.88890 1.21491 1.01034 1.01317 0.90557 1.20327 0.94961 0.96589 0.93501 1.22228 1.01307 0.96165 1.02032 1.22279 1.01640 0.98334 0.97899 1.21546 0.93923 1.00389 0.97870 1.45818 1.52313 1.15000 1.26145 1.15733 0.79726 0.80732 0.82734 1.91029 1.46309 1.76350 1.27492 1.46000 1.42540 1.11316 1.30753 1.20802 0.88605 0.89892 0.99441 1.23126 0.87676 0.82223 0.84085 1.90559 1.79757 1.41285 1.32958 1.83847 1.22989 1.47625 1.56875 1.21222 0.86678 1.17778 1.20021 0.88657 1.25345 0.99402 0.94814 0.96548 1.69993 1.34644 1.16797 1.28474 0.85658 0.80076 0.77848 0.79521 1.19819 1.20236 1.19101 1.20609 0.77410 0.90734 0.78643 1.90700 1.57343 1.30493 1.53810 0.92374 0.92607 0.92783 0.89837 0.90790 0.90073 0.90107 0.92786 0.92583 0.90120 0.92829 0.92439 0.92395 0.91458 0.91945 0.71983 0.85635 0.85656 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.19 37.26 0.34 -0.63 16 2 C -0.10 -0.85 2.56 -90.65 -0.23 -1.09 16 3 H 0.09 1.03 5.49 -52.12 -0.29 0.74 16 4 C -0.10 -0.90 4.24 -27.06 -0.11 -1.01 16 5 C 0.14 1.62 0.92 -133.13 -0.12 1.50 16 6 C -0.11 -1.19 3.74 -28.02 -0.10 -1.30 16 7 C -0.05 -0.53 0.72 -154.55 -0.11 -0.64 16 8 C -0.16 -1.98 8.02 37.23 0.30 -1.68 16 9 C -0.14 -1.24 8.06 37.92 0.31 -0.94 16 10 C -0.10 -0.80 3.77 -27.19 -0.10 -0.90 16 11 N -0.73 -8.70 5.71 -53.88 -0.31 -9.01 16 12 C 0.71 12.06 8.62 -88.18 -0.76 11.30 16 13 O -0.54 -10.99 17.50 5.28 0.09 -10.90 16 14 N -0.56 -9.82 2.10 -122.28 -0.26 -10.08 16 15 C 0.14 2.60 6.31 -5.21 -0.03 2.57 16 16 C 0.38 9.74 7.97 36.01 0.29 10.03 16 17 O -0.55 -15.01 15.67 -19.05 -0.30 -15.31 16 18 O -0.21 -6.02 9.75 -20.71 -0.20 -6.22 16 19 C -0.38 -11.45 9.64 30.92 0.30 -11.15 16 20 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 21 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 22 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 23 Si 0.94 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.54 8.44 6.55 -10.77 -0.07 8.37 16 28 O -0.45 -7.71 13.40 5.57 0.07 -7.63 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.53 8.14 -51.91 -0.42 0.11 16 33 H 0.07 0.64 8.11 -51.90 -0.42 0.22 16 34 H 0.08 0.74 7.90 -51.31 -0.41 0.34 16 35 H 0.08 1.20 7.89 -51.27 -0.40 0.79 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.79 8.05 -51.93 -0.42 0.38 16 38 H 0.08 1.15 4.17 -51.93 -0.22 0.93 16 39 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.51 8.12 -51.74 -0.42 0.09 16 43 H 0.06 0.42 8.08 -51.73 -0.42 0.00 16 44 H 0.44 3.79 8.95 -40.89 -0.37 3.43 16 45 H 0.13 2.22 7.86 -51.93 -0.41 1.81 16 46 H 0.13 2.12 7.91 -51.93 -0.41 1.71 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -36.06 377.24 -6.74 -42.80 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.05 Total: 3.17 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: -0.21 Total: 15.57 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.19 Total: -43.76 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.33 Total: -40.06 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.06 -6.74 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.245 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds