Wall clock time and date at job start Tue Mar 31 2020 21:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53190 * 1 3 3 H 1.08662 * 109.24051 * 2 1 4 4 C 1.53060 * 109.24493 * 239.65013 * 2 1 3 5 5 C 1.52302 * 109.54402 * 177.75373 * 4 2 1 6 6 C 1.51579 * 112.77191 * 54.59503 * 5 4 2 7 7 C 1.51872 * 115.54826 * 315.33362 * 6 5 4 8 8 C 1.53143 * 110.73505 * 278.61434 * 7 6 5 9 9 C 1.54451 * 107.98419 * 161.33923 * 7 6 5 10 10 C 1.52411 * 112.82423 * 42.45493 * 7 6 5 11 11 N 1.48027 * 108.70591 * 175.02255 * 5 4 2 12 12 C 1.34401 * 106.49103 * 125.65471 * 11 5 4 13 13 O 1.21596 * 123.89656 * 175.09484 * 12 11 5 14 14 N 1.33737 * 112.31839 * 355.22215 * 12 11 5 15 15 C 1.46470 * 124.37027 * 179.03407 * 14 12 11 16 16 C 1.50704 * 109.46944 * 270.04198 * 15 14 12 17 17 O 1.21211 * 120.00032 * 0.02562 * 16 15 14 18 18 O 1.34315 * 119.99855 * 179.97438 * 16 15 14 19 19 C 1.34919 * 116.99610 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38758 * 119.99761 * 180.02562 * 19 18 16 22 22 N 1.31447 * 119.99639 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47089 * 90.00245 * 23 21 19 25 25 H 1.48506 * 109.47237 * 209.99856 * 23 21 19 26 26 H 1.48498 * 109.47309 * 329.99856 * 23 21 19 27 27 C 1.35091 * 111.47944 * 359.07297 * 14 12 11 28 28 O 1.21265 * 125.95275 * 187.22273 * 27 14 12 29 29 H 1.09000 * 109.47012 * 298.95292 * 1 2 3 30 30 H 1.09002 * 109.47337 * 58.94921 * 1 2 3 31 31 H 1.09003 * 109.47676 * 178.95046 * 1 2 3 32 32 H 1.09031 * 109.44757 * 297.87489 * 4 2 1 33 33 H 1.09047 * 109.41412 * 57.68221 * 4 2 1 34 34 H 1.10079 * 108.58278 * 77.86203 * 6 5 4 35 35 H 1.10148 * 108.48054 * 193.03573 * 6 5 4 36 36 H 1.09006 * 109.47321 * 185.42284 * 8 7 6 37 37 H 1.08991 * 109.47511 * 305.42511 * 8 7 6 38 38 H 1.08999 * 109.47235 * 65.42809 * 8 7 6 39 39 H 1.08999 * 109.47351 * 297.89396 * 9 7 6 40 40 H 1.09005 * 109.47353 * 57.89032 * 9 7 6 41 41 H 1.08997 * 109.47801 * 177.89048 * 9 7 6 42 42 H 1.09342 * 109.40539 * 188.40016 * 10 7 6 43 43 H 1.09352 * 109.40014 * 69.73709 * 10 7 6 44 44 H 0.96805 * 125.96568 * 305.70627 * 11 5 4 45 45 H 1.08994 * 109.47101 * 30.04245 * 15 14 12 46 46 H 1.09002 * 109.47118 * 150.04425 * 15 14 12 47 47 H 0.96998 * 119.99502 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5319 0.0000 0.0000 3 1 1.8900 1.0259 0.0000 4 6 2.0364 -0.7302 -1.2470 5 6 3.5583 -0.6858 -1.2826 6 6 4.1908 -1.2253 -0.0152 7 6 3.5619 -0.7518 1.2836 8 6 4.0827 0.6374 1.6632 9 6 3.9892 -1.7259 2.4034 10 6 2.0386 -0.7430 1.2341 11 7 4.0303 -1.4976 -2.4269 12 6 4.8243 -0.6984 -3.1599 13 8 5.4517 -1.0728 -4.1319 14 7 4.8485 0.5561 -2.6972 15 6 5.6423 1.6385 -3.2834 16 6 7.0013 1.6738 -2.6331 17 8 7.2793 0.8736 -1.7661 18 8 7.9049 2.5913 -3.0149 19 6 9.1020 2.5678 -2.3930 20 1 9.2980 1.8327 -1.6264 21 6 10.0814 3.4880 -2.7385 22 7 9.8427 4.3829 -3.6712 23 14 11.7391 3.4549 -1.8781 24 1 12.6651 2.5634 -2.6218 25 1 12.3021 4.8285 -1.8353 26 1 11.5680 2.9467 -0.4933 27 6 4.0483 0.7009 -1.6184 28 8 3.7781 1.7470 -1.0677 29 1 -0.3633 0.4975 0.8992 30 1 -0.3634 0.5301 -0.8804 31 1 -0.3634 -1.0275 -0.0188 32 1 1.7022 -1.7677 -1.2203 33 1 1.6368 -0.2446 -2.1379 34 1 4.1556 -2.3251 -0.0462 35 1 5.2572 -0.9494 -0.0122 36 1 3.6941 0.9160 2.6428 37 1 5.1720 0.6207 1.6959 38 1 3.7526 1.3645 0.9213 39 1 3.6113 -2.7238 2.1807 40 1 5.0772 -1.7548 2.4644 41 1 3.5809 -1.3869 3.3554 42 1 1.6488 -0.2563 2.1322 43 1 1.6700 -1.7722 1.2106 44 1 3.8022 -2.4223 -2.6005 45 1 5.7560 1.4670 -4.3537 46 1 5.1363 2.5900 -3.1195 47 1 10.5275 5.0259 -3.9129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021973239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:05 Heat of formation + Delta-G solvation = -159.407678 kcal Electronic energy + Delta-G solvation = -31677.299947 eV Core-core repulsion = 27438.903637 eV Total energy + Delta-G solvation = -4238.396310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.95356 -41.14170 -40.39286 -39.40389 -37.51262 -37.33695 -35.84577 -35.06755 -34.38860 -31.33780 -30.43664 -28.11800 -27.62944 -27.44252 -27.36642 -25.35138 -23.77590 -22.54720 -21.74934 -21.27449 -20.01988 -19.46137 -19.09210 -18.99346 -17.72358 -17.55000 -16.92681 -16.75176 -16.65306 -16.43622 -16.20436 -16.04778 -15.77035 -15.41472 -15.22355 -15.14106 -14.49559 -14.25630 -14.00368 -13.91992 -13.70632 -13.43183 -13.17918 -13.05847 -12.99385 -12.77648 -12.62720 -12.53876 -12.44641 -12.28607 -12.23736 -12.13066 -12.06901 -11.78765 -11.70978 -11.44824 -11.26485 -11.14928 -10.97957 -10.86988 -10.76517 -10.45442 -8.60929 -6.41768 0.45718 0.86714 1.18683 1.30433 1.47529 1.51952 1.74480 1.99339 2.11246 2.61281 2.79705 2.89840 3.36894 3.44355 3.71608 3.82604 3.87465 3.97159 4.01980 4.14549 4.18246 4.26564 4.33581 4.42809 4.58482 4.61319 4.70968 4.74854 4.80344 4.83979 4.89266 4.92174 4.97870 5.01458 5.07043 5.16732 5.17216 5.24937 5.33683 5.42311 5.46881 5.52715 5.65971 5.73264 5.74090 5.88944 6.24429 6.49213 6.82644 6.98526 7.59440 8.59298 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.003461 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.245608 B = 8088.125670 C = 8746.609474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.063 0.937 4 C -0.099 4.099 5 C 0.149 3.851 6 C -0.103 4.103 7 C -0.051 4.051 8 C -0.160 4.160 9 C -0.141 4.141 10 C -0.095 4.095 11 N -0.700 5.700 12 C 0.703 3.297 13 O -0.580 6.580 14 N -0.571 5.571 15 C 0.143 3.857 16 C 0.381 3.619 17 O -0.574 6.574 18 O -0.234 6.234 19 C -0.424 4.424 20 H 0.079 0.921 21 C -0.001 4.001 22 N -0.897 5.897 23 Si 1.018 2.982 24 H -0.259 1.259 25 H -0.255 1.255 26 H -0.265 1.265 27 C 0.526 3.474 28 O -0.472 6.472 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.454 0.546 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 -12.956 9.308 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.081 0.919 4 C -0.137 4.137 5 C 0.059 3.941 6 C -0.141 4.141 7 C -0.051 4.051 8 C -0.217 4.217 9 C -0.198 4.198 10 C -0.132 4.132 11 N -0.365 5.365 12 C 0.404 3.596 13 O -0.456 6.456 14 N -0.317 5.317 15 C 0.020 3.980 16 C 0.227 3.773 17 O -0.472 6.472 18 O -0.141 6.141 19 C -0.499 4.499 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.534 5.534 23 Si 0.837 3.163 24 H -0.184 1.184 25 H -0.179 1.179 26 H -0.189 1.189 27 C 0.315 3.685 28 O -0.342 6.342 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.303 0.697 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.914 -12.526 9.153 26.041 hybrid contribution 1.494 0.135 -0.081 1.503 sum -19.420 -12.392 9.072 24.759 Atomic orbital electron populations 1.21783 0.92782 1.02965 1.02032 1.21163 0.97200 0.99698 0.93887 0.91860 1.21786 0.86874 1.05038 1.00028 1.21084 0.99249 0.85247 0.88507 1.21537 0.98368 1.03191 0.91024 1.20337 0.96680 0.95014 0.93112 1.22214 0.99223 0.97888 1.02356 1.22254 1.00622 0.99152 0.97767 1.21532 0.91639 1.02148 0.97859 1.45705 1.50451 1.15367 1.24983 1.15944 0.80047 0.80926 0.82692 1.90997 1.48212 1.76971 1.29413 1.46190 1.42515 1.11377 1.31624 1.20814 0.85522 0.91941 0.99722 1.24360 0.88981 0.80619 0.83347 1.90523 1.80632 1.41921 1.34100 1.83865 1.23473 1.49132 1.57656 1.21408 0.88111 1.19126 1.21283 0.90285 1.26567 1.03190 0.93516 0.96898 1.70066 1.36553 1.17305 1.29436 0.84628 0.74411 0.79145 0.78156 1.18362 1.17896 1.18929 1.21469 0.76836 0.92402 0.77768 1.90693 1.57847 1.31742 1.53897 0.92118 0.92919 0.90746 0.85962 0.90651 0.86813 0.94600 0.91216 0.95837 0.92243 0.90417 0.94267 0.91310 0.90693 0.88950 0.69748 0.84062 0.83498 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 72.05 0.66 -0.73 16 2 C -0.10 -1.46 2.56 -10.81 -0.03 -1.48 16 3 H 0.06 1.34 5.49 -2.57 -0.01 1.33 16 4 C -0.10 -1.38 4.24 30.38 0.13 -1.26 16 5 C 0.15 3.26 0.92 1.92 0.00 3.27 16 6 C -0.10 -2.20 3.74 29.76 0.11 -2.09 16 7 C -0.05 -0.93 0.72 -52.21 -0.04 -0.97 16 8 C -0.16 -4.07 8.02 72.03 0.58 -3.49 16 9 C -0.14 -2.09 8.06 72.48 0.58 -1.50 16 10 C -0.09 -1.18 3.77 30.30 0.11 -1.06 16 11 N -0.70 -15.63 5.71 -442.84 -2.53 -18.16 16 12 C 0.70 24.02 8.62 179.50 1.55 25.56 16 13 O -0.58 -24.07 17.50 -4.02 -0.07 -24.14 16 14 N -0.57 -20.54 2.10 -777.84 -1.63 -22.17 16 15 C 0.14 5.73 6.31 85.64 0.54 6.27 16 16 C 0.38 20.36 7.97 71.24 0.57 20.93 16 17 O -0.57 -33.25 15.67 20.77 0.33 -32.93 16 18 O -0.23 -14.33 9.75 14.84 0.14 -14.18 16 19 C -0.42 -26.68 9.64 67.94 0.66 -26.02 16 20 H 0.08 5.08 6.86 -2.91 -0.02 5.06 16 21 C 0.00 -0.04 5.49 84.87 0.47 0.43 16 22 N -0.90 -53.86 13.67 21.63 0.30 -53.56 16 23 Si 1.02 44.59 29.55 68.60 2.03 46.62 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 C 0.53 16.79 6.55 87.66 0.57 17.37 16 28 O -0.47 -16.65 13.40 -2.98 -0.04 -16.69 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.86 8.14 -2.37 -0.02 0.84 16 33 H 0.07 1.09 8.11 -2.36 -0.02 1.07 16 34 H 0.11 1.71 7.90 -1.81 -0.01 1.69 16 35 H 0.04 1.10 7.89 -1.77 -0.01 1.08 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 38 H 0.06 1.77 4.17 -2.39 -0.01 1.76 16 39 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 40 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.87 8.12 -2.21 -0.02 0.85 16 43 H 0.09 0.68 8.08 -2.20 -0.02 0.67 16 44 H 0.45 6.61 8.95 -92.85 -0.83 5.78 16 45 H 0.14 5.18 7.86 -2.39 -0.02 5.16 16 46 H 0.15 5.16 7.91 -2.39 -0.02 5.14 16 47 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -84.41 377.24 5.17 -79.24 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.18 Total: 20.74 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: 6.47 Total: 35.23 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -3.87 Total: -93.89 kcal Atomic # 8 Polarization: -88.30 SS G_CDS: 0.36 Total: -87.94 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -84.41 5.17 -79.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.165 kcal (2) G-P(sol) polarization free energy of solvation -84.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds