Wall clock time and date at job start Tue Mar 31 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.49301 * 2 1 4 4 C 1.53035 * 109.49929 * 239.93463 * 2 1 3 5 5 C 1.53040 * 109.54001 * 178.68218 * 4 2 1 6 6 H 1.09003 * 109.52527 * 181.33339 * 5 4 2 7 7 C 1.52999 * 109.49534 * 301.41422 * 5 4 2 8 8 C 1.53193 * 109.30889 * 61.36723 * 5 4 2 9 9 N 1.46924 * 108.77722 * 305.36130 * 8 5 4 10 10 C 1.34775 * 120.63470 * 233.59195 * 9 8 5 11 11 O 1.21271 * 120.00061 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.99838 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.47062 * 179.97438 * 12 10 9 14 14 C 1.76195 * 99.99923 * 179.97438 * 13 12 10 15 15 N 1.32382 * 126.26337 * 359.95645 * 14 13 12 16 16 N 1.28515 * 110.20833 * 180.02562 * 15 14 13 17 17 C 1.33103 * 109.74623 * 359.74662 * 16 15 14 18 18 C 1.39775 * 126.56723 * 180.27885 * 17 16 15 19 19 H 1.07994 * 119.99886 * 174.48201 * 18 17 16 20 20 C 1.40083 * 119.99934 * 354.47594 * 18 17 16 21 21 N 1.30818 * 119.99888 * 6.05394 * 20 18 17 22 22 Si 1.86797 * 119.99738 * 186.05147 * 20 18 17 23 23 H 1.48501 * 109.47077 * 94.98500 * 22 20 18 24 24 H 1.48505 * 109.47032 * 214.98258 * 22 20 18 25 25 H 1.48492 * 109.47279 * 334.98442 * 22 20 18 26 26 N 1.36680 * 126.25538 * 180.02562 * 14 13 12 27 27 C 1.46491 * 127.15452 * 359.94395 * 26 14 13 28 28 C 1.46934 * 118.73511 * 53.86524 * 9 8 5 29 29 H 1.09006 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.06203 * 1 2 3 31 31 H 1.09000 * 109.47233 * 60.06892 * 1 2 3 32 32 H 1.08999 * 109.46423 * 58.66041 * 4 2 1 33 33 H 1.09002 * 109.46374 * 298.70609 * 4 2 1 34 34 H 1.09006 * 109.46867 * 179.83247 * 7 5 4 35 35 H 1.08995 * 109.47494 * 299.83649 * 7 5 4 36 36 H 1.08996 * 109.46988 * 59.83824 * 7 5 4 37 37 H 1.09002 * 109.58655 * 185.58205 * 8 5 4 38 38 H 1.09001 * 109.59070 * 65.15582 * 8 5 4 39 39 H 1.09001 * 109.47658 * 59.99986 * 12 10 9 40 40 H 1.09002 * 109.47175 * 299.99292 * 12 10 9 41 41 H 0.96999 * 119.99542 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.47760 * 90.01964 * 27 26 14 43 43 H 1.09001 * 109.46811 * 330.01913 * 27 26 14 44 44 H 1.09007 * 109.47030 * 210.02855 * 27 26 14 45 45 H 1.08998 * 109.58762 * 65.92328 * 28 9 8 46 46 H 1.09002 * 109.58380 * 186.35354 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 3.5709 -0.6946 -1.2662 6 1 3.9340 -1.1887 -2.1674 7 6 4.0552 0.7566 -1.2490 8 6 4.1053 -1.4267 -0.0311 9 7 3.5046 -0.8294 1.1694 10 6 4.2811 -0.3869 2.1782 11 8 5.4877 -0.4803 2.1005 12 6 3.6498 0.2227 3.4033 13 16 4.9450 0.7145 4.5682 14 6 3.9540 1.3762 5.8660 15 7 2.6322 1.4472 5.8836 16 7 2.2311 1.9858 6.9793 17 6 3.2794 2.2909 7.7406 18 6 3.2454 2.8843 9.0056 19 1 4.1580 3.0047 9.5703 20 6 2.0275 3.3230 9.5409 21 7 0.9083 3.0720 8.9119 22 14 2.0016 4.2664 11.1530 23 1 1.9981 5.7248 10.8730 24 1 0.7807 3.9063 11.9177 25 1 3.2054 3.9183 11.9496 26 7 4.4095 1.9113 7.0384 27 6 5.8041 2.0481 7.4656 28 6 2.0410 -0.7293 1.2518 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.6582 -0.2240 -2.1390 33 1 1.6968 -1.7569 -1.2358 34 1 5.1450 0.7761 -1.2586 35 1 3.6747 1.2770 -2.1279 36 1 3.6909 1.2505 -0.3483 37 1 5.1896 -1.3245 0.0135 38 1 3.8376 -2.4818 -0.0874 39 1 2.9946 -0.5085 3.8766 40 1 3.0685 1.0985 3.1148 41 1 0.0649 3.3755 9.2828 42 1 6.1938 3.0095 7.1315 43 1 6.3979 1.2443 7.0304 44 1 5.8581 1.9920 8.5529 45 1 1.6084 -1.7287 1.2980 46 1 1.7630 -0.1668 2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279864768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:46 Heat of formation + Delta-G solvation = 22.579068 kcal Electronic energy + Delta-G solvation = -27074.373274 eV Core-core repulsion = 23318.914123 eV Total energy + Delta-G solvation = -3755.459151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53487 -40.48131 -38.04633 -33.89078 -33.69580 -33.57702 -33.30848 -30.08314 -29.22926 -27.07400 -26.92672 -26.47178 -25.62402 -25.27521 -21.87545 -20.89238 -20.67901 -20.06413 -18.72040 -17.43192 -17.20205 -16.52891 -15.84415 -15.56930 -15.33934 -15.19963 -14.78304 -14.58139 -14.36166 -14.30310 -13.78480 -13.70640 -13.40216 -13.06680 -12.93714 -12.56774 -12.35841 -12.26116 -12.21234 -12.17882 -11.84619 -11.79168 -11.37960 -11.32990 -11.29239 -11.08724 -10.92676 -10.73278 -10.52693 -10.39546 -10.24065 -9.83255 -9.72133 -9.60680 -8.77220 -8.69343 -8.41583 -8.39386 -6.80551 -6.66386 -4.57432 1.82953 2.57522 2.78876 2.90920 2.98134 3.06152 3.09788 3.35496 3.87003 4.23979 4.29451 4.41032 4.42112 4.52186 4.63736 4.69642 4.91382 5.11505 5.16908 5.28563 5.31171 5.32551 5.37446 5.44183 5.49043 5.53552 5.54846 5.57914 5.64658 5.70085 5.76810 5.82212 5.90201 5.91403 5.95332 6.02762 6.07402 6.20024 6.37656 6.75951 6.89427 7.21428 7.23718 7.49051 7.88333 8.07481 8.17711 8.69743 8.85788 10.26470 10.62069 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.002625 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.496487 B =10663.498486 C =11789.321727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.107 4.107 6 H 0.080 0.920 7 C -0.147 4.147 8 C 0.117 3.883 9 N -0.608 5.608 10 C 0.538 3.462 11 O -0.527 6.527 12 C -0.131 4.131 13 S 0.017 5.983 14 C 0.033 3.967 15 N -0.290 5.290 16 N -0.334 5.334 17 C 0.347 3.653 18 C -0.448 4.448 19 H 0.084 0.916 20 C 0.079 3.921 21 N -0.737 5.737 22 Si 0.920 3.080 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.262 1.262 26 N -0.513 5.513 27 C 0.101 3.899 28 C 0.107 3.893 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -6.282 -16.693 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 H 0.099 0.901 4 C -0.146 4.146 5 C -0.126 4.126 6 H 0.099 0.901 7 C -0.204 4.204 8 C -0.006 4.006 9 N -0.342 5.342 10 C 0.325 3.675 11 O -0.403 6.403 12 C -0.282 4.282 13 S 0.243 5.757 14 C -0.339 4.339 15 N -0.136 5.136 16 N -0.181 5.181 17 C 0.102 3.898 18 C -0.488 4.488 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.361 5.361 22 Si 0.744 3.256 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.186 1.186 26 N -0.215 5.215 27 C -0.044 4.044 28 C -0.016 4.016 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.260 -6.581 -17.313 18.659 hybrid contribution -0.226 0.762 1.382 1.594 sum 2.034 -5.819 -15.931 17.082 Atomic orbital electron populations 1.21784 0.94206 1.02110 1.02397 1.21638 0.96058 1.00547 0.94661 0.90101 1.21619 0.94621 1.00701 0.97704 1.21506 0.95954 0.97252 0.97886 0.90126 1.21842 1.01131 0.95510 1.01926 1.21643 0.99792 0.96003 0.83166 1.47934 1.06907 1.61428 1.17932 1.19902 0.86817 0.77434 0.83392 1.90701 1.13878 1.55934 1.79824 1.23423 1.02762 1.05795 0.96243 1.85056 1.05187 1.75940 1.09558 1.25683 0.96131 1.16952 0.95161 1.74491 1.04922 1.15967 1.18265 1.75420 1.20513 1.22772 0.99405 1.21625 0.79383 0.94404 0.94365 1.18107 0.95405 1.37350 0.97949 0.89760 1.25792 0.94648 0.95245 0.98972 1.70018 0.98469 1.31834 1.35781 0.86111 0.78897 0.79881 0.80684 1.19439 1.19993 1.18620 1.46025 1.07064 1.53443 1.14982 1.21511 0.80450 1.01308 1.01166 1.22035 0.79016 1.01299 0.99299 0.92492 0.91913 0.92372 0.91637 0.91747 0.92631 0.92790 0.92171 0.88832 0.91562 0.86428 0.86433 0.91029 0.92415 0.91476 0.90345 0.90958 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.11 -0.90 2.54 -90.27 -0.23 -1.13 16 3 H 0.08 0.76 6.33 -51.93 -0.33 0.43 16 4 C -0.11 -0.77 4.71 -26.69 -0.13 -0.90 16 5 C -0.11 -0.84 3.21 -90.50 -0.29 -1.13 16 6 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 7 C -0.15 -1.33 8.70 37.16 0.32 -1.01 16 8 C 0.12 1.14 5.82 -3.71 -0.02 1.11 16 9 N -0.61 -6.99 2.41 -172.50 -0.41 -7.41 16 10 C 0.54 8.04 7.72 -10.99 -0.08 7.95 16 11 O -0.53 -9.38 15.27 5.57 0.09 -9.29 16 12 C -0.13 -2.12 4.05 36.00 0.15 -1.97 16 13 S 0.02 0.33 20.92 -107.50 -2.25 -1.92 16 14 C 0.03 0.79 8.09 -87.27 -0.71 0.08 16 15 N -0.29 -7.82 11.62 30.89 0.36 -7.46 16 16 N -0.33 -9.94 10.50 31.26 0.33 -9.61 16 17 C 0.35 9.69 7.53 -154.80 -1.17 8.53 16 18 C -0.45 -11.86 9.05 -38.32 -0.35 -12.21 16 19 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 20 C 0.08 2.01 5.49 -17.29 -0.09 1.91 16 21 N -0.74 -20.09 11.96 55.56 0.66 -19.43 16 22 Si 0.92 18.47 29.57 -169.99 -5.03 13.45 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 N -0.51 -12.53 3.26 -123.18 -0.40 -12.93 16 27 C 0.10 1.88 10.89 59.84 0.65 2.53 16 28 C 0.11 1.02 5.65 -3.48 -0.02 1.00 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 37 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.12 1.88 7.93 -51.91 -0.41 1.47 16 40 H 0.12 1.89 7.70 -51.92 -0.40 1.49 16 41 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 44 H 0.08 1.37 7.47 -51.92 -0.39 0.98 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -33.80 380.78 -9.62 -43.42 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.08 Total: 1.42 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.62 Total: 4.03 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.54 Total: -56.84 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.25 Total: -1.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.80 -9.62 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.998 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds