Wall clock time and date at job start Tue Mar 31 2020 22:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.49301 * 2 1 4 4 C 1.53035 * 109.49929 * 239.93463 * 2 1 3 5 5 C 1.53040 * 109.54001 * 178.68218 * 4 2 1 6 6 H 1.09003 * 109.52527 * 181.33339 * 5 4 2 7 7 C 1.52999 * 109.49534 * 301.41422 * 5 4 2 8 8 C 1.53193 * 109.30889 * 61.36723 * 5 4 2 9 9 N 1.46924 * 108.77722 * 305.36130 * 8 5 4 10 10 C 1.34775 * 120.63470 * 233.59195 * 9 8 5 11 11 O 1.21271 * 120.00061 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.99838 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.47062 * 179.97438 * 12 10 9 14 14 C 1.76195 * 99.99923 * 179.97438 * 13 12 10 15 15 N 1.32382 * 126.26337 * 359.95645 * 14 13 12 16 16 N 1.28515 * 110.20833 * 180.02562 * 15 14 13 17 17 C 1.33103 * 109.74623 * 359.74662 * 16 15 14 18 18 C 1.39775 * 126.56723 * 180.27885 * 17 16 15 19 19 H 1.07994 * 119.99886 * 174.48201 * 18 17 16 20 20 C 1.40083 * 119.99934 * 354.47594 * 18 17 16 21 21 N 1.30818 * 119.99888 * 6.05394 * 20 18 17 22 22 Si 1.86797 * 119.99738 * 186.05147 * 20 18 17 23 23 H 1.48501 * 109.47077 * 94.98500 * 22 20 18 24 24 H 1.48505 * 109.47032 * 214.98258 * 22 20 18 25 25 H 1.48492 * 109.47279 * 334.98442 * 22 20 18 26 26 N 1.36680 * 126.25538 * 180.02562 * 14 13 12 27 27 C 1.46491 * 127.15452 * 359.94395 * 26 14 13 28 28 C 1.46934 * 118.73511 * 53.86524 * 9 8 5 29 29 H 1.09006 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.06203 * 1 2 3 31 31 H 1.09000 * 109.47233 * 60.06892 * 1 2 3 32 32 H 1.08999 * 109.46423 * 58.66041 * 4 2 1 33 33 H 1.09002 * 109.46374 * 298.70609 * 4 2 1 34 34 H 1.09006 * 109.46867 * 179.83247 * 7 5 4 35 35 H 1.08995 * 109.47494 * 299.83649 * 7 5 4 36 36 H 1.08996 * 109.46988 * 59.83824 * 7 5 4 37 37 H 1.09002 * 109.58655 * 185.58205 * 8 5 4 38 38 H 1.09001 * 109.59070 * 65.15582 * 8 5 4 39 39 H 1.09001 * 109.47658 * 59.99986 * 12 10 9 40 40 H 1.09002 * 109.47175 * 299.99292 * 12 10 9 41 41 H 0.96999 * 119.99542 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.47760 * 90.01964 * 27 26 14 43 43 H 1.09001 * 109.46811 * 330.01913 * 27 26 14 44 44 H 1.09007 * 109.47030 * 210.02855 * 27 26 14 45 45 H 1.08998 * 109.58762 * 65.92328 * 28 9 8 46 46 H 1.09002 * 109.58380 * 186.35354 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 3.5709 -0.6946 -1.2662 6 1 3.9340 -1.1887 -2.1674 7 6 4.0552 0.7566 -1.2490 8 6 4.1053 -1.4267 -0.0311 9 7 3.5046 -0.8294 1.1694 10 6 4.2811 -0.3869 2.1782 11 8 5.4877 -0.4803 2.1005 12 6 3.6498 0.2227 3.4033 13 16 4.9450 0.7145 4.5682 14 6 3.9540 1.3762 5.8660 15 7 2.6322 1.4472 5.8836 16 7 2.2311 1.9858 6.9793 17 6 3.2794 2.2909 7.7406 18 6 3.2454 2.8843 9.0056 19 1 4.1580 3.0047 9.5703 20 6 2.0275 3.3230 9.5409 21 7 0.9083 3.0720 8.9119 22 14 2.0016 4.2664 11.1530 23 1 1.9981 5.7248 10.8730 24 1 0.7807 3.9063 11.9177 25 1 3.2054 3.9183 11.9496 26 7 4.4095 1.9113 7.0384 27 6 5.8041 2.0481 7.4656 28 6 2.0410 -0.7293 1.2518 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.6582 -0.2240 -2.1390 33 1 1.6968 -1.7569 -1.2358 34 1 5.1450 0.7761 -1.2586 35 1 3.6747 1.2770 -2.1279 36 1 3.6909 1.2505 -0.3483 37 1 5.1896 -1.3245 0.0135 38 1 3.8376 -2.4818 -0.0874 39 1 2.9946 -0.5085 3.8766 40 1 3.0685 1.0985 3.1148 41 1 0.0649 3.3755 9.2828 42 1 6.1938 3.0095 7.1315 43 1 6.3979 1.2443 7.0304 44 1 5.8581 1.9920 8.5529 45 1 1.6084 -1.7287 1.2980 46 1 1.7630 -0.1668 2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279864768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:45 Heat of formation + Delta-G solvation = 3.605899 kcal Electronic energy + Delta-G solvation = -27075.196013 eV Core-core repulsion = 23318.914123 eV Total energy + Delta-G solvation = -3756.281889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45636 -41.49939 -39.04139 -35.62488 -35.16064 -34.83459 -34.29267 -31.53090 -31.00263 -28.26550 -27.84260 -27.58555 -27.39326 -26.27043 -22.81370 -22.67820 -22.38593 -21.15925 -19.54863 -19.26907 -18.41016 -18.03695 -17.28833 -16.95417 -16.64697 -16.48760 -16.13626 -15.94519 -15.50159 -15.15058 -15.02036 -14.86991 -14.64803 -14.36172 -14.00473 -13.83785 -13.81605 -13.64264 -13.17473 -13.08998 -12.97524 -12.89220 -12.74001 -12.61229 -12.48193 -12.00750 -11.97591 -11.88470 -11.82458 -11.65727 -11.44323 -11.40534 -11.30730 -10.91777 -10.59208 -10.38185 -10.29472 -9.70005 -8.57033 -8.54504 -6.58037 0.26717 1.13756 1.19040 1.36402 1.42546 1.59241 1.61107 1.93037 2.19001 2.43810 2.50349 3.26510 3.33030 3.68713 3.83180 3.87770 3.93586 3.99124 4.07674 4.20470 4.26349 4.39480 4.44618 4.47295 4.61515 4.64371 4.68762 4.72370 4.79339 4.84856 4.87286 4.90512 4.96142 5.06395 5.09269 5.13847 5.22986 5.30306 5.32189 5.39228 5.52375 5.53262 5.56908 6.01777 6.16462 6.22201 6.75925 6.91448 6.91934 8.40919 8.62548 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.002625 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.496487 B =10663.498486 C =11789.321727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.066 0.934 4 C -0.104 4.104 5 C -0.100 4.100 6 H 0.104 0.896 7 C -0.146 4.146 8 C 0.112 3.888 9 N -0.596 5.596 10 C 0.540 3.460 11 O -0.560 6.560 12 C -0.125 4.125 13 S 0.039 5.961 14 C 0.043 3.957 15 N -0.324 5.324 16 N -0.386 5.386 17 C 0.318 3.682 18 C -0.472 4.472 19 H 0.102 0.898 20 C 0.030 3.970 21 N -0.786 5.786 22 Si 1.006 2.994 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.248 1.248 26 N -0.520 5.520 27 C 0.093 3.907 28 C 0.101 3.899 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -6.780 -17.496 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.119 4.119 6 H 0.122 0.878 7 C -0.204 4.204 8 C -0.010 4.010 9 N -0.328 5.328 10 C 0.326 3.674 11 O -0.440 6.440 12 C -0.276 4.276 13 S 0.265 5.735 14 C -0.330 4.330 15 N -0.169 5.169 16 N -0.232 5.232 17 C 0.072 3.928 18 C -0.512 4.512 19 H 0.120 0.880 20 C -0.191 4.191 21 N -0.411 5.411 22 Si 0.825 3.175 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.171 1.171 26 N -0.222 5.222 27 C -0.050 4.050 28 C -0.022 4.022 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.744 -7.097 -18.154 19.684 hybrid contribution -0.318 0.828 1.436 1.688 sum 2.426 -6.269 -16.718 18.018 Atomic orbital electron populations 1.21755 0.93339 1.02818 1.02245 1.21595 0.96672 0.99707 0.94574 0.91583 1.21606 0.93706 1.01506 0.97288 1.21508 0.96599 0.96150 0.97670 0.87806 1.21833 1.00452 0.96567 1.01510 1.21867 0.98882 0.97338 0.82925 1.47993 1.07599 1.59803 1.17434 1.19618 0.86481 0.77660 0.83615 1.90686 1.15028 1.57768 1.80504 1.23467 1.01879 1.05973 0.96328 1.85002 1.05207 1.75075 1.08259 1.26542 0.96176 1.14385 0.95919 1.74371 1.06523 1.17768 1.18252 1.75289 1.22509 1.24699 1.00747 1.22042 0.80247 0.95259 0.95255 1.18619 0.96783 1.37804 0.97985 0.87971 1.26963 0.93640 0.95571 1.02912 1.70151 0.99471 1.33292 1.38157 0.84847 0.79453 0.77959 0.75253 1.18856 1.19403 1.17074 1.46350 1.08473 1.52702 1.14639 1.21851 0.77854 1.03065 1.02240 1.22236 0.77727 1.02474 0.99721 0.91326 0.93202 0.91445 0.90358 0.90265 0.93683 0.91419 0.94282 0.90551 0.89424 0.86248 0.86509 0.90488 0.90720 0.89421 0.89109 0.88986 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.11 -1.59 2.54 -10.57 -0.03 -1.61 16 3 H 0.07 1.20 6.33 -2.39 -0.02 1.19 16 4 C -0.10 -1.16 4.71 30.62 0.14 -1.02 16 5 C -0.10 -1.34 3.21 -10.72 -0.03 -1.38 16 6 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.15 -2.50 8.70 71.98 0.63 -1.87 16 8 C 0.11 1.98 5.82 86.36 0.50 2.49 16 9 N -0.60 -13.21 2.41 -818.06 -1.97 -15.18 16 10 C 0.54 16.12 7.72 87.66 0.68 16.80 16 11 O -0.56 -19.96 15.27 -3.00 -0.05 -20.00 16 12 C -0.12 -4.11 4.05 71.24 0.29 -3.82 16 13 S 0.04 1.53 20.92 -56.49 -1.18 0.35 16 14 C 0.04 2.13 8.09 179.18 1.45 3.58 16 15 N -0.32 -18.12 11.62 -56.17 -0.65 -18.77 16 16 N -0.39 -23.94 10.50 -55.01 -0.58 -24.52 16 17 C 0.32 18.26 7.53 133.23 1.00 19.26 16 18 C -0.47 -25.28 9.05 23.09 0.21 -25.07 16 19 H 0.10 4.87 7.26 -2.91 -0.02 4.85 16 20 C 0.03 1.54 5.49 85.29 0.47 2.01 16 21 N -0.79 -44.16 11.96 21.86 0.26 -43.90 16 22 Si 1.01 37.64 29.57 68.60 2.03 39.67 16 23 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 24 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 26 N -0.52 -25.63 3.26 -543.63 -1.77 -27.40 16 27 C 0.09 3.37 10.89 127.77 1.39 4.76 16 28 C 0.10 1.82 5.65 86.51 0.49 2.31 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.82 5.97 -2.39 -0.01 0.81 16 37 H 0.08 1.67 7.01 -2.39 -0.02 1.65 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 3.90 7.93 -2.40 -0.02 3.88 16 40 H 0.12 3.87 7.70 -2.39 -0.02 3.86 16 41 H 0.28 14.39 8.30 -92.71 -0.77 13.63 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 43 H 0.09 2.80 7.85 -2.39 -0.02 2.78 16 44 H 0.09 3.05 7.47 -2.38 -0.02 3.03 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.68 5.93 -2.39 -0.01 1.67 16 Total: -1.00 -76.49 380.78 4.93 -71.56 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.98 Total: 22.97 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.85 Total: 15.23 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -4.71 Total: -129.77 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.18 Total: 0.35 kcal Total: -76.49 4.93 -71.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.167 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds