Wall clock time and date at job start Tue Mar 31 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52863 * 2 1 4 4 C 1.53042 * 109.49570 * 239.91747 * 2 1 3 5 5 C 1.53039 * 109.54031 * 178.68756 * 4 2 1 6 6 H 1.08994 * 109.49543 * 301.41261 * 5 4 2 7 7 C 1.53003 * 109.49928 * 181.31925 * 5 4 2 8 8 C 1.52760 * 109.38459 * 61.24177 * 5 4 2 9 9 N 1.46931 * 109.00543 * 305.58756 * 8 5 4 10 10 C 1.34777 * 120.63086 * 233.58109 * 9 8 5 11 11 O 1.21283 * 119.99750 * 179.72075 * 10 9 8 12 12 C 1.50702 * 119.99928 * 0.02562 * 10 9 8 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 N 1.32391 * 126.26178 * 0.02562 * 14 13 12 16 16 N 1.28512 * 110.20427 * 179.97438 * 15 14 13 17 17 C 1.33096 * 109.74773 * 0.02562 * 16 15 14 18 18 C 1.39772 * 126.56490 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00288 * 179.97438 * 18 17 16 20 20 C 1.40084 * 120.00074 * 359.97438 * 18 17 16 21 21 N 1.30814 * 119.99768 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47420 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47220 * 119.99771 * 22 20 18 25 25 H 1.48506 * 109.47360 * 240.00005 * 22 20 18 26 26 N 1.36675 * 126.25874 * 179.71112 * 14 13 12 27 27 C 1.46504 * 127.15059 * 359.97067 * 26 14 13 28 28 C 1.46925 * 118.73924 * 53.31068 * 9 8 5 29 29 H 1.09004 * 109.46546 * 299.92060 * 1 2 3 30 30 H 1.09002 * 109.46672 * 59.91444 * 1 2 3 31 31 H 1.08992 * 109.47530 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46134 * 298.71058 * 4 2 1 33 33 H 1.09005 * 109.46097 * 58.66346 * 4 2 1 34 34 H 1.08996 * 109.46954 * 59.99793 * 7 5 4 35 35 H 1.08996 * 109.46966 * 180.02562 * 7 5 4 36 36 H 1.09008 * 109.46627 * 300.00063 * 7 5 4 37 37 H 1.08997 * 109.51122 * 185.71191 * 8 5 4 38 38 H 1.09000 * 109.43557 * 65.42042 * 8 5 4 39 39 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 40 40 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 41 41 H 0.97002 * 119.99962 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.46647 * 90.02338 * 27 26 14 43 43 H 1.09000 * 109.46838 * 210.02155 * 27 26 14 44 44 H 1.09001 * 109.46923 * 330.02693 * 27 26 14 45 45 H 1.09005 * 109.58470 * 66.42378 * 28 9 8 46 46 H 1.08991 * 109.58721 * 186.85194 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 -1.2484 5 6 3.5708 -0.6952 -1.2661 6 1 3.9159 0.3386 -1.2542 7 6 4.0796 -1.3896 -2.5309 8 6 4.1054 -1.4219 -0.0333 9 7 3.5046 -0.8293 1.1695 10 6 4.2812 -0.3859 2.1778 11 8 3.7732 0.1059 3.1633 12 6 5.7809 -0.4949 2.0778 13 16 6.5365 0.1885 3.5739 14 6 8.2397 -0.0614 3.1979 15 7 8.7260 -0.6080 2.0945 16 7 10.0099 -0.6377 2.1425 17 6 10.4294 -0.1081 3.2893 18 6 11.7565 0.0358 3.7038 19 1 11.9776 0.4837 4.6613 20 6 12.7997 -0.4010 2.8772 21 7 12.5319 -0.9439 1.7176 22 14 14.5733 -0.2081 3.4309 23 1 14.6069 0.4311 4.7709 24 1 15.2175 -1.5441 3.5031 25 1 15.3057 0.6428 2.4587 26 7 9.3007 0.2790 3.9894 27 6 9.2525 0.9186 5.3066 28 6 2.0413 -0.7239 1.2496 29 1 -0.3632 0.5126 0.8908 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6965 -1.7573 -1.2353 33 1 1.6581 -0.2245 -2.1390 34 1 3.6968 -0.8703 -3.4095 35 1 5.1694 -1.3698 -2.5428 36 1 3.7352 -2.4237 -2.5412 37 1 5.1894 -1.3163 0.0099 38 1 3.8410 -2.4777 -0.0915 39 1 6.0630 -1.5427 1.9744 40 1 6.1285 0.0625 1.2081 41 1 13.2543 -1.2460 1.1451 42 1 9.2037 0.1528 6.0807 43 1 10.1480 1.5234 5.4496 44 1 8.3701 1.5554 5.3692 45 1 1.6052 -1.7217 1.2979 46 1 1.7639 -0.1580 2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279864771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:49 Heat of formation + Delta-G solvation = 18.681963 kcal Electronic energy + Delta-G solvation = -26793.904093 eV Core-core repulsion = 23038.275951 eV Total energy + Delta-G solvation = -3755.628142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.50898 -40.39791 -38.00521 -34.18607 -33.70873 -33.69173 -33.31127 -30.17851 -29.23679 -27.00111 -26.88480 -26.46677 -25.62658 -25.23307 -21.13867 -20.93739 -20.77101 -20.41385 -19.18241 -17.41480 -17.17070 -16.58873 -15.73316 -15.70621 -15.37988 -15.17128 -15.06538 -14.69010 -14.39117 -13.90926 -13.70603 -13.49943 -13.30596 -13.02075 -12.93782 -12.75090 -12.44220 -12.34452 -12.25509 -12.18698 -12.13627 -11.84565 -11.36747 -11.32736 -11.14413 -11.11001 -10.94349 -10.83779 -10.61833 -10.37537 -10.23934 -9.85549 -9.71064 -9.63865 -8.80171 -8.69432 -8.41744 -8.39176 -6.80684 -6.65977 -4.57469 1.82617 2.55948 2.78704 2.90005 2.96523 3.06215 3.10677 3.35428 3.86893 4.24202 4.27508 4.40132 4.41067 4.49933 4.62157 4.64035 4.97331 5.07308 5.17308 5.27041 5.29052 5.30695 5.32185 5.38632 5.39122 5.51758 5.54437 5.58253 5.62214 5.66166 5.71477 5.80169 5.88651 5.90497 5.91495 5.98094 6.07563 6.15002 6.34546 6.75894 6.89090 7.19955 7.23722 7.49118 7.88486 8.05978 8.17902 8.69791 8.85848 10.26698 10.62346 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.002495 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.390117 B =11218.409907 C =12437.629271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.109 4.109 5 C -0.109 4.109 6 H 0.076 0.924 7 C -0.146 4.146 8 C 0.106 3.894 9 N -0.611 5.611 10 C 0.538 3.462 11 O -0.527 6.527 12 C -0.130 4.130 13 S 0.017 5.983 14 C 0.033 3.967 15 N -0.290 5.290 16 N -0.333 5.333 17 C 0.346 3.654 18 C -0.446 4.446 19 H 0.085 0.915 20 C 0.078 3.922 21 N -0.737 5.737 22 Si 0.920 3.080 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.513 5.513 27 C 0.100 3.900 28 C 0.117 3.883 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.278 0.722 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 0.054 -4.686 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.128 4.128 6 H 0.095 0.905 7 C -0.204 4.204 8 C -0.017 4.017 9 N -0.344 5.344 10 C 0.325 3.675 11 O -0.404 6.404 12 C -0.282 4.282 13 S 0.242 5.758 14 C -0.339 4.339 15 N -0.137 5.137 16 N -0.180 5.180 17 C 0.102 3.898 18 C -0.487 4.487 19 H 0.103 0.897 20 C -0.147 4.147 21 N -0.361 5.361 22 Si 0.744 3.256 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.197 1.197 26 N -0.215 5.215 27 C -0.044 4.044 28 C -0.005 4.005 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.573 0.028 -4.771 19.176 hybrid contribution 1.584 0.091 0.300 1.615 sum -16.988 0.119 -4.471 17.567 Atomic orbital electron populations 1.21751 0.94330 1.02023 1.02084 1.21526 0.95948 1.00320 0.94982 0.90671 1.21666 0.94689 1.00807 0.97462 1.21439 0.95829 1.00775 0.94738 0.90527 1.21773 1.01770 1.00447 0.96425 1.21855 0.99266 0.97144 0.83388 1.47974 1.06604 1.61675 1.18182 1.19929 0.88043 0.77109 0.82462 1.90705 1.75004 1.44001 1.30661 1.23420 0.93974 1.07524 1.03278 1.85057 0.89699 1.78795 1.22207 1.25674 0.94040 1.17208 0.96986 1.74496 1.06653 1.15834 1.16680 1.75419 0.98695 1.27046 1.16889 1.21634 0.87803 0.92922 0.87489 1.18141 0.86567 1.39140 1.04816 0.89740 1.25798 1.01253 0.93486 0.94193 1.70019 1.34181 1.24849 1.07088 0.86071 0.80954 0.78844 0.79703 1.18526 1.19740 1.19750 1.46016 1.05415 1.53023 1.17066 1.21515 1.02748 0.97326 0.82857 1.21661 0.79045 1.00754 0.99044 0.92349 0.92319 0.92482 0.91681 0.91596 0.92305 0.91861 0.92436 0.88785 0.90986 0.86375 0.86392 0.91067 0.92473 0.90320 0.91433 0.91523 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.11 -0.88 2.87 -90.50 -0.26 -1.14 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -0.79 4.45 -26.69 -0.12 -0.91 16 5 C -0.11 -0.90 2.86 -90.72 -0.26 -1.16 16 6 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 8 C 0.11 1.04 5.60 -3.93 -0.02 1.01 16 9 N -0.61 -7.20 2.98 -173.03 -0.52 -7.72 16 10 C 0.54 8.17 7.72 -10.98 -0.08 8.08 16 11 O -0.53 -9.51 15.27 5.55 0.08 -9.43 16 12 C -0.13 -2.13 4.05 36.01 0.15 -1.98 16 13 S 0.02 0.33 20.92 -107.50 -2.25 -1.92 16 14 C 0.03 0.79 8.09 -87.27 -0.71 0.09 16 15 N -0.29 -7.83 11.62 30.89 0.36 -7.47 16 16 N -0.33 -9.93 10.48 31.26 0.33 -9.60 16 17 C 0.35 9.68 7.53 -154.81 -1.17 8.52 16 18 C -0.45 -11.82 9.04 -38.32 -0.35 -12.17 16 19 H 0.08 2.04 7.31 -52.49 -0.38 1.65 16 20 C 0.08 1.99 5.50 -17.29 -0.10 1.89 16 21 N -0.74 -20.12 11.94 55.56 0.66 -19.46 16 22 Si 0.92 18.48 29.56 -169.99 -5.03 13.45 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 N -0.51 -12.55 3.26 -123.17 -0.40 -12.95 16 27 C 0.10 1.88 10.87 59.85 0.65 2.53 16 28 C 0.12 1.17 5.72 -3.71 -0.02 1.15 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.12 1.90 7.95 -51.91 -0.41 1.49 16 40 H 0.12 1.90 7.68 -51.92 -0.40 1.50 16 41 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 44 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -33.94 385.44 -9.84 -43.78 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.30 Total: 0.91 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.60 Total: 4.60 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.43 Total: -57.20 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.25 Total: -1.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.94 -9.84 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.464 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds