Wall clock time and date at job start Tue Mar 31 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49753 * 2 1 4 4 C 1.53037 * 109.50315 * 120.06842 * 2 1 3 5 5 C 1.53039 * 109.53489 * 58.61608 * 4 2 1 6 6 H 1.09001 * 109.50224 * 301.41321 * 5 4 2 7 7 C 1.53001 * 109.52302 * 181.33447 * 5 4 2 8 8 C 1.53192 * 109.31504 * 61.37060 * 5 4 2 9 9 N 1.46927 * 108.77257 * 305.36406 * 8 5 4 10 10 C 1.34773 * 120.63173 * 233.58018 * 9 8 5 11 11 O 1.21280 * 119.99872 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00420 * 179.97438 * 10 9 8 13 13 S 1.80994 * 109.47577 * 180.02562 * 12 10 9 14 14 C 1.76194 * 100.00421 * 180.02562 * 13 12 10 15 15 N 1.32390 * 126.25928 * 359.69442 * 14 13 12 16 16 N 1.28510 * 110.20588 * 180.26361 * 15 14 13 17 17 C 1.33093 * 109.74819 * 359.97438 * 16 15 14 18 18 C 1.39769 * 126.56652 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00493 * 180.02562 * 18 17 16 20 20 C 1.40083 * 120.00014 * 0.02663 * 18 17 16 21 21 N 1.30810 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47391 * 89.99377 * 22 20 18 24 24 H 1.48499 * 109.47050 * 209.99950 * 22 20 18 25 25 H 1.48503 * 109.47000 * 329.99758 * 22 20 18 26 26 N 1.36675 * 126.26334 * 179.97438 * 14 13 12 27 27 C 1.46496 * 127.14766 * 359.77347 * 26 14 13 28 28 C 1.46925 * 118.74034 * 53.86095 * 9 8 5 29 29 H 1.09002 * 109.46901 * 299.92886 * 1 2 3 30 30 H 1.09004 * 109.47025 * 59.93447 * 1 2 3 31 31 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45760 * 298.60323 * 4 2 1 33 33 H 1.08992 * 109.46316 * 178.63833 * 4 2 1 34 34 H 1.08999 * 109.47108 * 300.14830 * 7 5 4 35 35 H 1.09004 * 109.47092 * 60.14700 * 7 5 4 36 36 H 1.08998 * 109.47258 * 180.14361 * 7 5 4 37 37 H 1.08999 * 109.59003 * 185.57637 * 8 5 4 38 38 H 1.09002 * 109.58624 * 65.14887 * 8 5 4 39 39 H 1.09005 * 109.46990 * 60.00272 * 12 10 9 40 40 H 1.08999 * 109.47258 * 300.00816 * 12 10 9 41 41 H 0.97004 * 120.00090 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47488 * 89.97447 * 27 26 14 43 43 H 1.09003 * 109.47552 * 209.97391 * 27 26 14 44 44 H 1.09002 * 109.47231 * 329.97626 * 27 26 14 45 45 H 1.09000 * 109.59172 * 65.92384 * 28 9 8 46 46 H 1.08999 * 109.59254 * 186.35501 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 1.2484 5 6 1.5038 -2.1557 1.2660 6 1 0.4140 -2.1360 1.2539 7 6 1.9875 -2.8676 2.5309 8 6 2.0154 -2.9038 0.0309 9 7 1.6529 -2.1381 -1.1695 10 6 0.9767 -2.7224 -2.1784 11 8 0.6612 -3.8908 -2.1004 12 6 0.6116 -1.9235 -3.4029 13 16 -0.2851 -2.9799 -4.5673 14 6 -0.5780 -1.8250 -5.8654 15 7 -0.2073 -0.5542 -5.8811 16 7 -0.5841 0.0045 -6.9754 17 6 -1.2244 -0.8810 -7.7352 18 6 -1.7813 -0.6481 -8.9958 19 1 -2.2806 -1.4484 -9.5218 20 6 -1.6917 0.6232 -9.5771 21 7 -1.0874 1.5927 -8.9399 22 14 -2.4366 0.9346 -11.2617 23 1 -3.8453 1.3777 -11.1058 24 1 -1.6596 1.9908 -11.9589 25 1 -2.3969 -0.3173 -12.0595 26 7 -1.2341 -2.0758 -7.0378 27 6 -1.8252 -3.3458 -7.4667 28 6 2.0469 -0.7251 -1.2520 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6983 -0.1956 2.1389 33 1 3.1306 -0.7436 1.2356 34 1 3.0773 -2.8861 2.5432 35 1 1.6232 -2.3350 3.4095 36 1 1.6066 -3.8888 2.5413 37 1 1.5573 -3.8918 -0.0137 38 1 3.0994 -3.0035 0.0872 39 1 1.5192 -1.5491 -3.8764 40 1 -0.0203 -1.0838 -3.1139 41 1 -1.0257 2.4732 -9.3423 42 1 -2.8612 -3.3959 -7.1316 43 1 -1.7913 -3.4136 -8.5541 44 1 -1.2628 -4.1730 -7.0334 45 1 3.1334 -0.6507 -1.2982 46 1 1.6096 -0.2751 -2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279864774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:51 Heat of formation + Delta-G solvation = 22.489014 kcal Electronic energy + Delta-G solvation = -27043.583728 eV Core-core repulsion = 23288.120672 eV Total energy + Delta-G solvation = -3755.463056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.53460 -40.48107 -38.05200 -34.14384 -33.69890 -33.31921 -33.25862 -30.16335 -29.23421 -27.19512 -26.84351 -26.46729 -25.62336 -25.22012 -21.91649 -20.89852 -20.68556 -20.08702 -18.67708 -17.42716 -17.20587 -16.48227 -15.85193 -15.68209 -15.39138 -15.08644 -14.78032 -14.58446 -14.37276 -14.32521 -13.80555 -13.58475 -13.42439 -13.12386 -13.00753 -12.61706 -12.31885 -12.27930 -12.19033 -12.15862 -11.90893 -11.77929 -11.38209 -11.31387 -11.30708 -11.07176 -10.93566 -10.81890 -10.44648 -10.39881 -10.23130 -9.85020 -9.71110 -9.62565 -8.77377 -8.69054 -8.41561 -8.38933 -6.80500 -6.65714 -4.57376 1.83166 2.57286 2.79201 2.91217 2.98210 3.06095 3.09437 3.35674 3.86959 4.24424 4.29028 4.41253 4.43024 4.51537 4.63285 4.67884 4.90062 5.12065 5.18209 5.28083 5.31106 5.32345 5.34868 5.39359 5.43877 5.49822 5.58199 5.58572 5.64111 5.69143 5.77813 5.79888 5.89121 5.91486 5.97744 5.98271 6.07539 6.20718 6.37507 6.76042 6.88872 7.21227 7.23926 7.49267 7.88689 8.07297 8.17563 8.69849 8.85936 10.26910 10.62546 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.002497 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.013074 B =11208.691854 C =12123.934076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.110 4.110 6 H 0.079 0.921 7 C -0.145 4.145 8 C 0.118 3.882 9 N -0.608 5.608 10 C 0.538 3.462 11 O -0.528 6.528 12 C -0.130 4.130 13 S 0.016 5.984 14 C 0.033 3.967 15 N -0.290 5.290 16 N -0.333 5.333 17 C 0.346 3.654 18 C -0.447 4.447 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.737 5.737 22 Si 0.920 3.080 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.262 1.262 26 N -0.513 5.513 27 C 0.100 3.900 28 C 0.105 3.895 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -4.665 17.002 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.129 4.129 6 H 0.097 0.903 7 C -0.202 4.202 8 C -0.004 4.004 9 N -0.342 5.342 10 C 0.325 3.675 11 O -0.405 6.405 12 C -0.282 4.282 13 S 0.242 5.758 14 C -0.339 4.339 15 N -0.137 5.137 16 N -0.181 5.181 17 C 0.102 3.898 18 C -0.487 4.487 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.362 5.362 22 Si 0.744 3.256 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.186 1.186 26 N -0.215 5.215 27 C -0.044 4.044 28 C -0.018 4.018 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.512 -4.897 17.616 19.097 hybrid contribution -0.582 0.475 -1.431 1.616 sum 4.930 -4.423 16.185 17.488 Atomic orbital electron populations 1.21884 0.94583 1.02334 1.02025 1.21574 0.96828 0.99538 0.94668 0.89767 1.21617 1.00441 0.94982 0.97600 1.21568 1.01509 0.95295 0.94574 0.90258 1.21760 1.01271 1.00474 0.96731 1.21651 0.99778 0.96116 0.82900 1.47931 1.56591 1.11743 1.17916 1.19909 0.77035 0.87165 0.83414 1.90705 1.53540 1.16358 1.79851 1.23422 1.05797 1.02749 0.96220 1.85055 1.71120 1.10021 1.09596 1.25673 1.13589 0.99510 0.95129 1.74494 1.19298 1.01612 1.18253 1.75418 1.21585 1.21706 0.99352 1.21623 0.95138 0.78785 0.94275 1.18102 1.34848 0.97295 0.98449 0.89789 1.25793 0.94250 0.95240 0.99425 1.70008 1.28289 1.01804 1.36051 0.86123 0.79457 0.79085 0.80902 1.19375 1.19999 1.18646 1.46011 1.49163 1.11020 1.15331 1.21512 0.97783 0.83977 1.01178 1.22017 1.00146 0.80227 0.99386 0.92626 0.92188 0.92241 0.91635 0.91748 0.92540 0.92369 0.92393 0.88931 0.91574 0.86442 0.86393 0.91011 0.92476 0.90326 0.91440 0.90936 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.71 37.16 0.32 -1.09 16 2 C -0.11 -0.87 3.21 -90.27 -0.29 -1.16 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.77 4.71 -26.69 -0.13 -0.90 16 5 C -0.11 -0.88 2.53 -90.50 -0.23 -1.11 16 6 H 0.08 0.73 6.34 -51.93 -0.33 0.40 16 7 C -0.14 -0.93 9.20 37.16 0.34 -0.58 16 8 C 0.12 1.16 5.71 -3.71 -0.02 1.14 16 9 N -0.61 -7.01 2.40 -172.50 -0.41 -7.42 16 10 C 0.54 8.07 7.72 -10.99 -0.08 7.98 16 11 O -0.53 -9.46 15.27 5.56 0.08 -9.37 16 12 C -0.13 -2.12 4.05 36.00 0.15 -1.97 16 13 S 0.02 0.32 20.92 -107.50 -2.25 -1.93 16 14 C 0.03 0.79 8.09 -87.27 -0.71 0.09 16 15 N -0.29 -7.82 11.62 30.89 0.36 -7.46 16 16 N -0.33 -9.93 10.48 31.26 0.33 -9.60 16 17 C 0.35 9.69 7.53 -154.82 -1.17 8.52 16 18 C -0.45 -11.83 9.05 -38.32 -0.35 -12.17 16 19 H 0.08 2.02 7.30 -52.49 -0.38 1.64 16 20 C 0.08 2.00 5.50 -17.29 -0.10 1.90 16 21 N -0.74 -20.13 11.94 55.56 0.66 -19.47 16 22 Si 0.92 18.48 29.56 -169.99 -5.03 13.45 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 N -0.51 -12.54 3.26 -123.18 -0.40 -12.94 16 27 C 0.10 1.88 10.87 59.84 0.65 2.53 16 28 C 0.11 1.00 5.78 -3.48 -0.02 0.98 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 5.97 -51.93 -0.31 0.32 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 1.88 7.93 -51.91 -0.41 1.47 16 40 H 0.12 1.89 7.70 -51.92 -0.40 1.49 16 41 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 44 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -33.86 380.85 -9.63 -43.48 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.09 Total: 1.36 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.62 Total: 4.16 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.53 Total: -56.89 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.25 Total: -1.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.86 -9.63 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.971 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds