Wall clock time and date at job start Tue Mar 31 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49753 * 2 1 4 4 C 1.53037 * 109.50315 * 120.06842 * 2 1 3 5 5 C 1.53039 * 109.53489 * 58.61608 * 4 2 1 6 6 H 1.09001 * 109.50224 * 301.41321 * 5 4 2 7 7 C 1.53001 * 109.52302 * 181.33447 * 5 4 2 8 8 C 1.53192 * 109.31504 * 61.37060 * 5 4 2 9 9 N 1.46927 * 108.77257 * 305.36406 * 8 5 4 10 10 C 1.34773 * 120.63173 * 233.58018 * 9 8 5 11 11 O 1.21280 * 119.99872 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00420 * 179.97438 * 10 9 8 13 13 S 1.80994 * 109.47577 * 180.02562 * 12 10 9 14 14 C 1.76194 * 100.00421 * 180.02562 * 13 12 10 15 15 N 1.32390 * 126.25928 * 359.69442 * 14 13 12 16 16 N 1.28510 * 110.20588 * 180.26361 * 15 14 13 17 17 C 1.33093 * 109.74819 * 359.97438 * 16 15 14 18 18 C 1.39769 * 126.56652 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00493 * 180.02562 * 18 17 16 20 20 C 1.40083 * 120.00014 * 0.02663 * 18 17 16 21 21 N 1.30810 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47391 * 89.99377 * 22 20 18 24 24 H 1.48499 * 109.47050 * 209.99950 * 22 20 18 25 25 H 1.48503 * 109.47000 * 329.99758 * 22 20 18 26 26 N 1.36675 * 126.26334 * 179.97438 * 14 13 12 27 27 C 1.46496 * 127.14766 * 359.77347 * 26 14 13 28 28 C 1.46925 * 118.74034 * 53.86095 * 9 8 5 29 29 H 1.09002 * 109.46901 * 299.92886 * 1 2 3 30 30 H 1.09004 * 109.47025 * 59.93447 * 1 2 3 31 31 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45760 * 298.60323 * 4 2 1 33 33 H 1.08992 * 109.46316 * 178.63833 * 4 2 1 34 34 H 1.08999 * 109.47108 * 300.14830 * 7 5 4 35 35 H 1.09004 * 109.47092 * 60.14700 * 7 5 4 36 36 H 1.08998 * 109.47258 * 180.14361 * 7 5 4 37 37 H 1.08999 * 109.59003 * 185.57637 * 8 5 4 38 38 H 1.09002 * 109.58624 * 65.14887 * 8 5 4 39 39 H 1.09005 * 109.46990 * 60.00272 * 12 10 9 40 40 H 1.08999 * 109.47258 * 300.00816 * 12 10 9 41 41 H 0.97004 * 120.00090 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47488 * 89.97447 * 27 26 14 43 43 H 1.09003 * 109.47552 * 209.97391 * 27 26 14 44 44 H 1.09002 * 109.47231 * 329.97626 * 27 26 14 45 45 H 1.09000 * 109.59172 * 65.92384 * 28 9 8 46 46 H 1.08999 * 109.59254 * 186.35501 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 1.2484 5 6 1.5038 -2.1557 1.2660 6 1 0.4140 -2.1360 1.2539 7 6 1.9875 -2.8676 2.5309 8 6 2.0154 -2.9038 0.0309 9 7 1.6529 -2.1381 -1.1695 10 6 0.9767 -2.7224 -2.1784 11 8 0.6612 -3.8908 -2.1004 12 6 0.6116 -1.9235 -3.4029 13 16 -0.2851 -2.9799 -4.5673 14 6 -0.5780 -1.8250 -5.8654 15 7 -0.2073 -0.5542 -5.8811 16 7 -0.5841 0.0045 -6.9754 17 6 -1.2244 -0.8810 -7.7352 18 6 -1.7813 -0.6481 -8.9958 19 1 -2.2806 -1.4484 -9.5218 20 6 -1.6917 0.6232 -9.5771 21 7 -1.0874 1.5927 -8.9399 22 14 -2.4366 0.9346 -11.2617 23 1 -3.8453 1.3777 -11.1058 24 1 -1.6596 1.9908 -11.9589 25 1 -2.3969 -0.3173 -12.0595 26 7 -1.2341 -2.0758 -7.0378 27 6 -1.8252 -3.3458 -7.4667 28 6 2.0469 -0.7251 -1.2520 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6983 -0.1956 2.1389 33 1 3.1306 -0.7436 1.2356 34 1 3.0773 -2.8861 2.5432 35 1 1.6232 -2.3350 3.4095 36 1 1.6066 -3.8888 2.5413 37 1 1.5573 -3.8918 -0.0137 38 1 3.0994 -3.0035 0.0872 39 1 1.5192 -1.5491 -3.8764 40 1 -0.0203 -1.0838 -3.1139 41 1 -1.0257 2.4732 -9.3423 42 1 -2.8612 -3.3959 -7.1316 43 1 -1.7913 -3.4136 -8.5541 44 1 -1.2628 -4.1730 -7.0334 45 1 3.1334 -0.6507 -1.2982 46 1 1.6096 -0.2751 -2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279864774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:51 Heat of formation + Delta-G solvation = 3.468578 kcal Electronic energy + Delta-G solvation = -27044.408516 eV Core-core repulsion = 23288.120672 eV Total energy + Delta-G solvation = -3756.287844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.45410 -41.50396 -39.05123 -35.62478 -35.16212 -35.00028 -34.06032 -31.56895 -31.04247 -28.25750 -27.97849 -27.52178 -27.34099 -26.22905 -22.79875 -22.63117 -22.49626 -21.15809 -19.54761 -19.25164 -18.41624 -17.98824 -17.28768 -16.96109 -16.74188 -16.50019 -16.12430 -15.88313 -15.49797 -15.18559 -15.00606 -14.87371 -14.52716 -14.47098 -14.02801 -13.89383 -13.80283 -13.61173 -13.16670 -13.01740 -12.93976 -12.89312 -12.76725 -12.67932 -12.47809 -12.01689 -12.00389 -11.89551 -11.80831 -11.66529 -11.49754 -11.44532 -11.09650 -11.02643 -10.58856 -10.37733 -10.29382 -9.70529 -8.56639 -8.54256 -6.57926 0.26815 1.14134 1.19355 1.35739 1.42556 1.58542 1.61812 1.92726 2.19073 2.44428 2.50399 3.27186 3.34224 3.68138 3.84507 3.86670 3.96022 3.96748 4.07888 4.20039 4.26900 4.42773 4.44656 4.46963 4.57952 4.61601 4.66527 4.72871 4.78114 4.86516 4.87041 4.91356 4.95981 5.04801 5.09348 5.17398 5.23741 5.29600 5.32360 5.35598 5.51439 5.53529 5.57144 6.02144 6.16191 6.22178 6.76094 6.90967 6.91929 8.41343 8.63063 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.002497 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.013074 B =11208.691854 C =12123.934076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.104 4.104 5 C -0.105 4.105 6 H 0.063 0.937 7 C -0.140 4.140 8 C 0.115 3.885 9 N -0.596 5.596 10 C 0.540 3.460 11 O -0.562 6.562 12 C -0.124 4.124 13 S 0.038 5.962 14 C 0.044 3.956 15 N -0.324 5.324 16 N -0.385 5.385 17 C 0.317 3.683 18 C -0.470 4.470 19 H 0.102 0.898 20 C 0.029 3.971 21 N -0.786 5.786 22 Si 1.006 2.994 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.249 1.249 26 N -0.520 5.520 27 C 0.093 3.907 28 C 0.098 3.902 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -5.144 17.669 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 H 0.120 0.880 4 C -0.141 4.141 5 C -0.124 4.124 6 H 0.082 0.918 7 C -0.198 4.198 8 C -0.007 4.007 9 N -0.328 5.328 10 C 0.326 3.674 11 O -0.442 6.442 12 C -0.275 4.275 13 S 0.263 5.737 14 C -0.329 4.329 15 N -0.169 5.169 16 N -0.231 5.231 17 C 0.071 3.929 18 C -0.511 4.511 19 H 0.120 0.880 20 C -0.192 4.192 21 N -0.411 5.411 22 Si 0.825 3.175 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.172 1.172 26 N -0.222 5.222 27 C -0.050 4.050 28 C -0.024 4.024 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.930 -5.373 18.323 19.994 hybrid contribution -0.651 0.536 -1.439 1.668 sum 5.279 -4.837 16.884 18.340 Atomic orbital electron populations 1.21871 0.95820 1.01165 1.01892 1.21583 0.95677 1.00459 0.94443 0.88035 1.21606 1.01246 0.93953 0.97303 1.21517 1.00578 0.96038 0.94305 0.91846 1.21729 1.01950 1.00113 0.96007 1.21848 1.00801 0.95329 0.82737 1.47997 1.54801 1.12668 1.17347 1.19639 0.77532 0.86547 0.83658 1.90689 1.55437 1.17549 1.80553 1.23462 1.05446 1.02387 0.96250 1.85011 1.71322 1.09029 1.08329 1.26520 1.10924 0.99630 0.95862 1.74374 1.21215 1.03099 1.18225 1.75287 1.23489 1.23699 1.00673 1.22046 0.95797 0.79893 0.95158 1.18615 1.35366 0.98617 0.98459 0.87974 1.26964 0.94018 0.94363 1.03805 1.70144 1.29915 1.02596 1.38479 0.84861 0.78402 0.79373 0.74894 1.18612 1.19481 1.17190 1.46338 1.48924 1.11925 1.14990 1.21851 0.98752 0.82177 1.02243 1.22250 1.01448 0.78875 0.99845 0.91381 0.93729 0.93895 0.90371 0.90263 0.91416 0.91422 0.92827 0.90791 0.89634 0.86205 0.86435 0.90489 0.90778 0.89093 0.89398 0.88724 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.71 71.98 0.63 -2.10 16 2 C -0.10 -1.47 3.21 -10.57 -0.03 -1.50 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.10 -1.17 4.71 30.62 0.14 -1.03 16 5 C -0.11 -1.48 2.53 -10.72 -0.03 -1.51 16 6 H 0.06 1.12 6.34 -2.39 -0.02 1.10 16 7 C -0.14 -1.47 9.20 71.98 0.66 -0.81 16 8 C 0.11 2.10 5.71 86.36 0.49 2.59 16 9 N -0.60 -13.26 2.40 -818.06 -1.97 -15.23 16 10 C 0.54 16.19 7.72 87.66 0.68 16.87 16 11 O -0.56 -20.24 15.27 -3.03 -0.05 -20.28 16 12 C -0.12 -4.07 4.05 71.23 0.29 -3.78 16 13 S 0.04 1.47 20.92 -56.49 -1.18 0.29 16 14 C 0.04 2.17 8.09 179.18 1.45 3.62 16 15 N -0.32 -18.09 11.62 -56.17 -0.65 -18.74 16 16 N -0.38 -23.85 10.48 -55.03 -0.58 -24.42 16 17 C 0.32 18.20 7.53 133.23 1.00 19.20 16 18 C -0.47 -25.18 9.05 23.09 0.21 -24.97 16 19 H 0.10 4.86 7.30 -2.91 -0.02 4.84 16 20 C 0.03 1.51 5.50 85.29 0.47 1.98 16 21 N -0.79 -44.21 11.94 21.85 0.26 -43.95 16 22 Si 1.01 37.62 29.56 68.60 2.03 39.64 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 26 N -0.52 -25.62 3.26 -543.64 -1.77 -27.39 16 27 C 0.09 3.37 10.87 127.77 1.39 4.75 16 28 C 0.10 1.73 5.78 86.51 0.50 2.23 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.91 5.97 -2.39 -0.01 0.90 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 1.67 7.01 -2.39 -0.02 1.65 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.12 3.90 7.93 -2.39 -0.02 3.88 16 40 H 0.12 3.89 7.70 -2.40 -0.02 3.87 16 41 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.09 3.06 7.53 -2.39 -0.02 3.04 16 44 H 0.09 2.81 7.85 -2.39 -0.02 2.79 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.08 1.68 5.93 -2.39 -0.01 1.66 16 Total: -1.00 -76.58 380.85 4.93 -71.65 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.98 Total: 22.89 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.85 Total: 15.55 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -4.70 Total: -129.74 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.18 Total: 0.29 kcal Total: -76.58 4.93 -71.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279864774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.120 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds