Wall clock time and date at job start Tue Mar 31 2020 21:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.70076 * 2 1 4 4 C 1.53630 * 109.73816 * 239.45570 * 2 1 3 5 5 C 1.53041 * 109.24115 * 295.11943 * 4 2 1 6 6 C 1.53041 * 109.53473 * 298.50814 * 5 4 2 7 7 C 1.53191 * 109.31309 * 61.36907 * 6 5 4 8 8 H 1.09011 * 109.70410 * 65.22007 * 7 6 5 9 9 C 1.52999 * 109.58723 * 185.57285 * 7 6 5 10 10 N 1.46919 * 108.77463 * 305.36270 * 7 6 5 11 11 C 1.34780 * 120.63301 * 233.58352 * 10 7 6 12 12 O 1.21284 * 119.99808 * 354.20682 * 11 10 7 13 13 C 1.50695 * 120.00222 * 174.20878 * 11 10 7 14 14 S 1.81003 * 109.46958 * 180.02562 * 13 11 10 15 15 C 1.76200 * 99.99830 * 179.97438 * 14 13 11 16 16 N 1.32387 * 126.26241 * 359.97258 * 15 14 13 17 17 N 1.28512 * 110.20654 * 179.97438 * 16 15 14 18 18 C 1.33099 * 109.74816 * 0.02562 * 17 16 15 19 19 C 1.39771 * 126.56627 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99979 * 185.06298 * 19 18 17 21 21 C 1.40082 * 120.00159 * 5.07016 * 19 18 17 22 22 N 1.30814 * 119.99624 * 5.04866 * 21 19 18 23 23 Si 1.86797 * 120.00019 * 185.05280 * 21 19 18 24 24 H 1.48505 * 109.46724 * 264.99338 * 23 21 19 25 25 H 1.48495 * 109.47058 * 145.00272 * 23 21 19 26 26 H 1.48491 * 109.47314 * 24.99618 * 23 21 19 27 27 N 1.36676 * 126.25939 * 180.24613 * 15 14 13 28 28 C 1.46500 * 127.14997 * 0.02562 * 27 15 14 29 29 H 1.08999 * 109.46676 * 299.64245 * 1 2 3 30 30 H 1.08996 * 109.47255 * 59.64181 * 1 2 3 31 31 H 1.08996 * 109.46944 * 179.64389 * 1 2 3 32 32 H 1.08997 * 109.63214 * 175.12625 * 4 2 1 33 33 H 1.09000 * 109.43030 * 54.98870 * 4 2 1 34 34 H 1.09000 * 109.46153 * 178.49304 * 5 4 2 35 35 H 1.08997 * 109.46139 * 58.53165 * 5 4 2 36 36 H 1.08995 * 109.49994 * 301.41262 * 6 5 4 37 37 H 1.09003 * 109.52264 * 181.33229 * 6 5 4 38 38 H 1.09003 * 109.46901 * 185.08469 * 9 7 6 39 39 H 1.08995 * 109.47392 * 305.08476 * 9 7 6 40 40 H 1.09001 * 109.46949 * 65.08920 * 9 7 6 41 41 H 1.08995 * 109.47304 * 60.00393 * 13 11 10 42 42 H 1.09002 * 109.47010 * 299.99612 * 13 11 10 43 43 H 0.97004 * 119.99882 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.46604 * 270.12892 * 28 27 15 45 45 H 1.09000 * 109.47345 * 30.12508 * 28 27 15 46 46 H 1.08994 * 109.47311 * 150.13019 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0489 -0.7349 -1.2454 5 6 1.6419 -2.2081 -1.1678 6 6 2.2758 -2.8497 0.0687 7 6 1.7644 -2.1400 1.3262 8 1 0.6932 -2.3108 1.4348 9 6 2.4973 -2.6821 2.5550 10 7 2.0226 -0.6997 1.1944 11 6 2.6937 -0.0316 2.1535 12 8 2.9989 -0.5941 3.1838 13 6 3.0649 1.4140 1.9458 14 16 3.9526 2.0240 3.4005 15 6 4.2557 3.6858 2.8993 16 7 3.8917 4.2364 1.7518 17 7 4.2698 5.4639 1.7087 18 6 4.9053 5.7785 2.8350 19 6 5.4618 7.0192 3.1584 20 1 6.0271 7.1360 4.0712 21 6 5.2862 8.1111 2.2987 22 7 4.5202 7.9969 1.2445 23 14 6.1459 9.7302 2.6577 24 1 5.2256 10.6241 3.4055 25 1 6.5351 10.3780 1.3795 26 1 7.3603 9.4756 3.4735 27 7 4.9144 4.6407 3.6221 28 6 5.5047 4.4913 4.9546 29 1 -0.3632 0.5083 0.8932 30 1 -0.3633 0.5194 -0.8867 31 1 -0.3633 -1.0276 -0.0064 32 1 3.1354 -0.6594 -1.2890 33 1 1.6162 -0.2845 -2.1387 34 1 1.9851 -2.7274 -2.0626 35 1 0.5566 -2.2819 -1.0992 36 1 3.3601 -2.7544 0.0126 37 1 2.0051 -3.9047 0.1109 38 1 2.0700 -2.2423 3.4562 39 1 2.3895 -3.7660 2.5935 40 1 3.5543 -2.4241 2.4908 41 1 2.1602 2.0038 1.7981 42 1 3.7039 1.5025 1.0672 43 1 4.3989 8.7530 0.6490 44 1 4.7615 4.7424 5.7114 45 1 5.8312 3.4608 5.0939 46 1 6.3604 5.1596 5.0498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279909440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:41 Heat of formation + Delta-G solvation = 39.020511 kcal Electronic energy + Delta-G solvation = -27322.039695 eV Core-core repulsion = 23567.293499 eV Total energy + Delta-G solvation = -3754.746196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75345 -40.49686 -37.77355 -33.93700 -33.69273 -33.30237 -32.99377 -30.22767 -29.31077 -28.42880 -26.69942 -26.46117 -25.49938 -23.76507 -22.32927 -21.07478 -20.81244 -20.43393 -18.52529 -17.36736 -16.94661 -16.46696 -16.04831 -15.55218 -15.37020 -15.05891 -14.69770 -14.49641 -14.30981 -14.14474 -13.71911 -13.55493 -13.38222 -12.99336 -12.90561 -12.81932 -12.39393 -12.21114 -12.20783 -12.04318 -11.93331 -11.78008 -11.39677 -11.29927 -11.24665 -11.06645 -10.93253 -10.84235 -10.67070 -10.40381 -10.18680 -9.73758 -9.60483 -9.12824 -8.71978 -8.67036 -8.43214 -8.37493 -6.79945 -6.66699 -4.56853 1.84445 2.59308 2.79477 2.90974 2.95690 3.06287 3.10193 3.35727 3.87140 4.24466 4.33546 4.40883 4.45692 4.57348 4.67954 4.78513 4.92755 5.09426 5.15636 5.21956 5.31225 5.32249 5.38174 5.42204 5.57969 5.61619 5.61846 5.65242 5.67882 5.73631 5.79707 5.82186 5.91526 5.91705 6.03306 6.07424 6.20267 6.28472 6.61002 6.76258 6.89247 7.23749 7.29177 7.49324 7.88774 8.13746 8.17888 8.69943 8.86010 10.26603 10.62327 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002662 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.327838 B =10517.092178 C =11516.962042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.101 0.899 4 C -0.130 4.130 5 C -0.121 4.121 6 C -0.131 4.131 7 C 0.146 3.854 8 H 0.070 0.930 9 C -0.141 4.141 10 N -0.602 5.602 11 C 0.538 3.462 12 O -0.519 6.519 13 C -0.133 4.133 14 S 0.017 5.983 15 C 0.033 3.967 16 N -0.290 5.290 17 N -0.335 5.335 18 C 0.348 3.652 19 C -0.448 4.448 20 H 0.084 0.916 21 C 0.080 3.920 22 N -0.738 5.738 23 Si 0.920 3.080 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.262 1.262 27 N -0.513 5.513 28 C 0.101 3.899 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 -16.860 -2.357 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 H 0.119 0.881 4 C -0.168 4.168 5 C -0.159 4.159 6 C -0.170 4.170 7 C 0.043 3.957 8 H 0.088 0.912 9 C -0.198 4.198 10 N -0.337 5.337 11 C 0.325 3.675 12 O -0.396 6.396 13 C -0.284 4.284 14 S 0.242 5.758 15 C -0.339 4.339 16 N -0.136 5.136 17 N -0.182 5.182 18 C 0.103 3.897 19 C -0.488 4.488 20 H 0.102 0.898 21 C -0.146 4.146 22 N -0.362 5.362 23 Si 0.744 3.256 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.186 1.186 27 N -0.215 5.215 28 C -0.044 4.044 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.800 -17.520 -2.397 18.610 hybrid contribution 0.612 1.516 0.125 1.639 sum -5.188 -16.004 -2.272 16.976 Atomic orbital electron populations 1.22158 0.94658 1.02482 1.02835 1.21517 0.94667 0.97115 0.84311 0.88092 1.22002 1.01783 0.95698 0.97331 1.21557 1.00840 0.95564 0.97895 1.22015 1.01280 0.99363 0.94295 1.21237 0.99449 0.79131 0.95904 0.91215 1.22225 1.01771 0.98339 0.97421 1.48130 1.56071 1.08753 1.20777 1.19876 0.77193 0.87354 0.83067 1.90756 1.54084 1.68024 1.26726 1.23487 1.05644 0.95946 1.03346 1.85018 1.71529 0.98248 1.20966 1.25690 1.13298 0.97378 0.97551 1.74488 1.19314 1.05200 1.14620 1.75394 1.21844 1.02708 1.18290 1.21615 0.95020 0.86937 0.86113 1.18101 1.32121 0.90689 1.07931 0.89780 1.25784 0.94356 1.00365 0.94076 1.69999 1.25879 1.31320 1.09037 0.86116 0.80064 0.80570 0.78865 1.19478 1.19927 1.18582 1.46025 1.48943 1.10433 1.16128 1.21510 0.98496 1.01979 0.82433 0.92024 0.91096 0.92040 0.91183 0.90478 0.91711 0.91529 0.91387 0.90909 0.90100 0.93941 0.91563 0.86594 0.86584 0.91005 0.92437 0.91471 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.03 37.16 0.34 -1.04 16 2 C 0.13 1.25 3.14 -67.37 -0.21 1.04 16 3 H 0.10 1.10 5.93 -51.93 -0.31 0.79 16 4 C -0.13 -1.08 5.58 -26.38 -0.15 -1.22 16 5 C -0.12 -0.87 5.68 -26.69 -0.15 -1.03 16 6 C -0.13 -1.07 5.37 -26.61 -0.14 -1.21 16 7 C 0.15 1.46 3.07 -67.60 -0.21 1.25 16 8 H 0.07 0.64 7.49 -51.92 -0.39 0.26 16 9 C -0.14 -1.60 7.61 37.16 0.28 -1.32 16 10 N -0.60 -6.97 2.68 -157.48 -0.42 -7.39 16 11 C 0.54 7.91 7.52 -10.99 -0.08 7.83 16 12 O -0.52 -8.73 11.43 5.55 0.06 -8.66 16 13 C -0.13 -2.15 4.07 36.00 0.15 -2.00 16 14 S 0.02 0.32 20.92 -107.50 -2.25 -1.93 16 15 C 0.03 0.79 8.09 -87.27 -0.71 0.08 16 16 N -0.29 -7.83 11.62 30.89 0.36 -7.47 16 17 N -0.33 -10.00 10.53 31.26 0.33 -9.67 16 18 C 0.35 9.73 7.51 -154.81 -1.16 8.57 16 19 C -0.45 -11.88 9.05 -38.32 -0.35 -12.23 16 20 H 0.08 2.03 7.27 -52.49 -0.38 1.64 16 21 C 0.08 2.03 5.49 -17.29 -0.09 1.93 16 22 N -0.74 -20.16 11.98 55.56 0.67 -19.50 16 23 Si 0.92 18.49 29.56 -169.99 -5.03 13.46 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 N -0.51 -12.55 3.26 -123.18 -0.40 -12.95 16 28 C 0.10 1.89 10.88 59.85 0.65 2.54 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 5.71 -51.93 -0.30 0.17 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.44 6.49 -51.93 -0.34 0.10 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.08 6.54 -51.93 -0.34 0.74 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.88 6.96 -51.93 -0.36 0.52 16 41 H 0.12 1.87 7.69 -51.92 -0.40 1.47 16 42 H 0.12 1.88 7.94 -51.91 -0.41 1.47 16 43 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 44 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 46 H 0.08 1.36 7.49 -51.93 -0.39 0.98 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -33.28 374.31 -9.84 -43.12 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.96 Total: 2.15 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.84 Total: 3.19 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.53 Total: -56.98 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.06 Total: -8.66 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.25 Total: -1.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.28 -9.84 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279909440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.139 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds