Wall clock time and date at job start Tue Mar 31 2020 21:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.70076 * 2 1 4 4 C 1.53630 * 109.73816 * 239.45570 * 2 1 3 5 5 C 1.53041 * 109.24115 * 295.11943 * 4 2 1 6 6 C 1.53041 * 109.53473 * 298.50814 * 5 4 2 7 7 C 1.53191 * 109.31309 * 61.36907 * 6 5 4 8 8 H 1.09011 * 109.70410 * 65.22007 * 7 6 5 9 9 C 1.52999 * 109.58723 * 185.57285 * 7 6 5 10 10 N 1.46919 * 108.77463 * 305.36270 * 7 6 5 11 11 C 1.34780 * 120.63301 * 233.58352 * 10 7 6 12 12 O 1.21284 * 119.99808 * 354.20682 * 11 10 7 13 13 C 1.50695 * 120.00222 * 174.20878 * 11 10 7 14 14 S 1.81003 * 109.46958 * 180.02562 * 13 11 10 15 15 C 1.76200 * 99.99830 * 179.97438 * 14 13 11 16 16 N 1.32387 * 126.26241 * 359.97258 * 15 14 13 17 17 N 1.28512 * 110.20654 * 179.97438 * 16 15 14 18 18 C 1.33099 * 109.74816 * 0.02562 * 17 16 15 19 19 C 1.39771 * 126.56627 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99979 * 185.06298 * 19 18 17 21 21 C 1.40082 * 120.00159 * 5.07016 * 19 18 17 22 22 N 1.30814 * 119.99624 * 5.04866 * 21 19 18 23 23 Si 1.86797 * 120.00019 * 185.05280 * 21 19 18 24 24 H 1.48505 * 109.46724 * 264.99338 * 23 21 19 25 25 H 1.48495 * 109.47058 * 145.00272 * 23 21 19 26 26 H 1.48491 * 109.47314 * 24.99618 * 23 21 19 27 27 N 1.36676 * 126.25939 * 180.24613 * 15 14 13 28 28 C 1.46500 * 127.14997 * 0.02562 * 27 15 14 29 29 H 1.08999 * 109.46676 * 299.64245 * 1 2 3 30 30 H 1.08996 * 109.47255 * 59.64181 * 1 2 3 31 31 H 1.08996 * 109.46944 * 179.64389 * 1 2 3 32 32 H 1.08997 * 109.63214 * 175.12625 * 4 2 1 33 33 H 1.09000 * 109.43030 * 54.98870 * 4 2 1 34 34 H 1.09000 * 109.46153 * 178.49304 * 5 4 2 35 35 H 1.08997 * 109.46139 * 58.53165 * 5 4 2 36 36 H 1.08995 * 109.49994 * 301.41262 * 6 5 4 37 37 H 1.09003 * 109.52264 * 181.33229 * 6 5 4 38 38 H 1.09003 * 109.46901 * 185.08469 * 9 7 6 39 39 H 1.08995 * 109.47392 * 305.08476 * 9 7 6 40 40 H 1.09001 * 109.46949 * 65.08920 * 9 7 6 41 41 H 1.08995 * 109.47304 * 60.00393 * 13 11 10 42 42 H 1.09002 * 109.47010 * 299.99612 * 13 11 10 43 43 H 0.97004 * 119.99882 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.46604 * 270.12892 * 28 27 15 45 45 H 1.09000 * 109.47345 * 30.12508 * 28 27 15 46 46 H 1.08994 * 109.47311 * 150.13019 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0489 -0.7349 -1.2454 5 6 1.6419 -2.2081 -1.1678 6 6 2.2758 -2.8497 0.0687 7 6 1.7644 -2.1400 1.3262 8 1 0.6932 -2.3108 1.4348 9 6 2.4973 -2.6821 2.5550 10 7 2.0226 -0.6997 1.1944 11 6 2.6937 -0.0316 2.1535 12 8 2.9989 -0.5941 3.1838 13 6 3.0649 1.4140 1.9458 14 16 3.9526 2.0240 3.4005 15 6 4.2557 3.6858 2.8993 16 7 3.8917 4.2364 1.7518 17 7 4.2698 5.4639 1.7087 18 6 4.9053 5.7785 2.8350 19 6 5.4618 7.0192 3.1584 20 1 6.0271 7.1360 4.0712 21 6 5.2862 8.1111 2.2987 22 7 4.5202 7.9969 1.2445 23 14 6.1459 9.7302 2.6577 24 1 5.2256 10.6241 3.4055 25 1 6.5351 10.3780 1.3795 26 1 7.3603 9.4756 3.4735 27 7 4.9144 4.6407 3.6221 28 6 5.5047 4.4913 4.9546 29 1 -0.3632 0.5083 0.8932 30 1 -0.3633 0.5194 -0.8867 31 1 -0.3633 -1.0276 -0.0064 32 1 3.1354 -0.6594 -1.2890 33 1 1.6162 -0.2845 -2.1387 34 1 1.9851 -2.7274 -2.0626 35 1 0.5566 -2.2819 -1.0992 36 1 3.3601 -2.7544 0.0126 37 1 2.0051 -3.9047 0.1109 38 1 2.0700 -2.2423 3.4562 39 1 2.3895 -3.7660 2.5935 40 1 3.5543 -2.4241 2.4908 41 1 2.1602 2.0038 1.7981 42 1 3.7039 1.5025 1.0672 43 1 4.3989 8.7530 0.6490 44 1 4.7615 4.7424 5.7114 45 1 5.8312 3.4608 5.0939 46 1 6.3604 5.1596 5.0498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279909440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:40 Heat of formation + Delta-G solvation = 20.205589 kcal Electronic energy + Delta-G solvation = -27322.855571 eV Core-core repulsion = 23567.293499 eV Total energy + Delta-G solvation = -3755.562072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45866 -41.74900 -38.76755 -35.62751 -35.17131 -34.76437 -33.87120 -31.51100 -31.06517 -29.46358 -28.21453 -27.44968 -27.38037 -24.58125 -23.21471 -22.79800 -22.46557 -21.73904 -19.56636 -19.22635 -18.02903 -17.91319 -17.30092 -17.14290 -16.69221 -16.42887 -16.12098 -15.83653 -15.31936 -15.25586 -15.03195 -14.75323 -14.44100 -14.27837 -13.98776 -13.81725 -13.80758 -13.70532 -13.32865 -13.15069 -12.95431 -12.89410 -12.76435 -12.75370 -12.51456 -12.05035 -12.01490 -11.88972 -11.80834 -11.67585 -11.52361 -11.43066 -11.30806 -10.59313 -10.39542 -10.28789 -10.26300 -9.62360 -8.57269 -8.54218 -6.57880 0.28208 1.14869 1.19066 1.40086 1.42387 1.58642 1.61441 1.91707 2.18882 2.43651 2.50072 3.27565 3.33514 3.69155 3.86035 3.91104 3.97554 4.01740 4.07520 4.18392 4.27580 4.34480 4.41235 4.44304 4.50063 4.61126 4.66604 4.70954 4.84794 4.86916 4.94870 4.95780 5.01457 5.03515 5.09908 5.15437 5.22209 5.26751 5.31954 5.37182 5.52815 5.56721 5.69022 6.01771 6.22005 6.25211 6.75708 6.91585 6.99762 8.40675 8.62357 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002662 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.327838 B =10517.092178 C =11516.962042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.141 3.859 8 H 0.087 0.913 9 C -0.134 4.134 10 N -0.593 5.593 11 C 0.539 3.461 12 O -0.544 6.544 13 C -0.127 4.127 14 S 0.042 5.958 15 C 0.043 3.957 16 N -0.325 5.325 17 N -0.387 5.387 18 C 0.319 3.681 19 C -0.472 4.472 20 H 0.102 0.898 21 C 0.031 3.969 22 N -0.787 5.787 23 Si 1.006 2.994 24 H -0.261 1.261 25 H -0.270 1.270 26 H -0.249 1.249 27 N -0.520 5.520 28 C 0.093 3.907 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.285 0.715 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -18.001 -2.207 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.164 4.164 7 C 0.039 3.961 8 H 0.105 0.895 9 C -0.191 4.191 10 N -0.326 5.326 11 C 0.325 3.675 12 O -0.424 6.424 13 C -0.278 4.278 14 S 0.267 5.733 15 C -0.330 4.330 16 N -0.170 5.170 17 N -0.234 5.234 18 C 0.073 3.927 19 C -0.512 4.512 20 H 0.120 0.880 21 C -0.190 4.190 22 N -0.412 5.412 23 Si 0.825 3.175 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.172 1.172 27 N -0.222 5.222 28 C -0.050 4.050 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.021 -18.693 -2.261 19.768 hybrid contribution 0.608 1.654 0.097 1.765 sum -5.413 -17.039 -2.164 18.008 Atomic orbital electron populations 1.22126 0.93097 1.03477 1.02888 1.21706 0.95858 0.96432 0.84299 0.89773 1.22001 1.01001 0.96738 0.96856 1.21558 1.01595 0.94342 0.97900 1.21993 1.00453 1.00451 0.93535 1.21469 1.00328 0.77862 0.96438 0.89505 1.22084 1.00152 0.99767 0.97103 1.48212 1.54529 1.09597 1.20297 1.19606 0.77821 0.86537 0.83529 1.90763 1.55577 1.68179 1.27844 1.23537 1.05117 0.97359 1.01830 1.84943 1.71628 0.94518 1.22230 1.26571 1.10636 0.99238 0.96602 1.74369 1.21259 1.04924 1.16418 1.75261 1.23790 1.04118 1.20215 1.22033 0.95652 0.88440 0.86588 1.18616 1.32692 0.90839 1.09099 0.87968 1.26959 0.94498 1.04311 0.93250 1.70132 1.27636 1.32992 1.10465 0.84851 0.78995 0.74822 0.78868 1.18514 1.19512 1.17221 1.46353 1.48721 1.09542 1.17573 1.21850 0.99246 1.03744 0.80149 0.93366 0.89695 0.90524 0.92531 0.88956 0.90295 0.90140 0.92746 0.88673 0.92394 0.91502 0.93921 0.86740 0.86810 0.90466 0.90799 0.89381 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.03 71.98 0.65 -1.74 16 2 C 0.12 2.25 3.14 45.12 0.14 2.39 16 3 H 0.08 1.87 5.93 -2.39 -0.01 1.85 16 4 C -0.13 -1.90 5.58 30.82 0.17 -1.73 16 5 C -0.12 -1.32 5.68 30.62 0.17 -1.15 16 6 C -0.13 -1.73 5.37 30.67 0.16 -1.57 16 7 C 0.14 2.57 3.07 44.98 0.14 2.71 16 8 H 0.09 1.35 7.49 -2.38 -0.02 1.34 16 9 C -0.13 -2.93 7.61 71.98 0.55 -2.38 16 10 N -0.59 -13.33 2.68 -770.52 -2.06 -15.39 16 11 C 0.54 15.96 7.52 87.65 0.66 16.62 16 12 O -0.54 -18.46 11.43 -3.04 -0.03 -18.50 16 13 C -0.13 -4.20 4.07 71.23 0.29 -3.91 16 14 S 0.04 1.61 20.92 -56.49 -1.18 0.43 16 15 C 0.04 2.12 8.09 179.18 1.45 3.57 16 16 N -0.32 -18.25 11.62 -56.17 -0.65 -18.90 16 17 N -0.39 -24.11 10.53 -55.02 -0.58 -24.69 16 18 C 0.32 18.37 7.51 133.23 1.00 19.37 16 19 C -0.47 -25.37 9.05 23.09 0.21 -25.16 16 20 H 0.10 4.88 7.27 -2.91 -0.02 4.86 16 21 C 0.03 1.58 5.49 85.29 0.47 2.05 16 22 N -0.79 -44.36 11.98 21.85 0.26 -44.10 16 23 Si 1.01 37.71 29.56 68.60 2.03 39.74 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 25 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 26 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 27 N -0.52 -25.72 3.26 -543.62 -1.77 -27.49 16 28 C 0.09 3.38 10.88 127.77 1.39 4.78 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 0.93 5.71 -2.39 -0.01 0.91 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.74 6.49 -2.39 -0.02 0.72 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.54 6.54 -2.39 -0.02 1.52 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 1.13 6.96 -2.39 -0.02 1.11 16 41 H 0.11 3.84 7.69 -2.40 -0.02 3.82 16 42 H 0.11 3.83 7.94 -2.39 -0.02 3.81 16 43 H 0.29 14.44 8.30 -92.71 -0.77 13.68 16 44 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.09 2.81 7.85 -2.39 -0.02 2.79 16 46 H 0.09 3.06 7.49 -2.39 -0.02 3.04 16 Total: -1.00 -75.80 374.31 4.45 -71.35 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.99 Total: 23.71 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 7.45 Total: 13.85 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -4.80 Total: -130.57 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.03 Total: -18.50 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.18 Total: 0.43 kcal Total: -75.80 4.45 -71.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279909440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.551 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds