Wall clock time and date at job start Tue Mar 31 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70167 * 2 1 4 4 C 1.53616 * 109.66574 * 120.59396 * 2 1 3 5 5 C 1.53043 * 109.24261 * 174.54951 * 4 2 1 6 6 C 1.53037 * 109.53852 * 298.51121 * 5 4 2 7 7 C 1.53193 * 109.31105 * 61.36343 * 6 5 4 8 8 H 1.09005 * 109.58477 * 185.57932 * 7 6 5 9 9 C 1.52992 * 109.70311 * 65.22532 * 7 6 5 10 10 N 1.46927 * 108.77734 * 305.36232 * 7 6 5 11 11 C 1.34769 * 120.63444 * 233.58500 * 10 7 6 12 12 O 1.21285 * 120.00206 * 185.58449 * 11 10 7 13 13 C 1.50702 * 120.00009 * 5.58605 * 11 10 7 14 14 S 1.80993 * 109.47247 * 174.84258 * 13 11 10 15 15 C 1.76201 * 100.00165 * 179.97438 * 14 13 11 16 16 N 1.32394 * 126.25816 * 359.97438 * 15 14 13 17 17 N 1.28513 * 110.20320 * 179.97438 * 16 15 14 18 18 C 1.33098 * 109.74546 * 359.97438 * 17 16 15 19 19 C 1.39778 * 126.55890 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99457 * 180.02562 * 19 18 17 21 21 C 1.40075 * 120.00485 * 0.02562 * 19 18 17 22 22 N 1.30822 * 119.99780 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47080 * 59.99589 * 23 21 19 25 25 H 1.48502 * 109.47367 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46833 * 299.99810 * 23 21 19 27 27 N 1.36670 * 126.25972 * 180.28427 * 15 14 13 28 28 C 1.46492 * 127.15431 * 0.03156 * 27 15 14 29 29 H 1.08997 * 109.47285 * 172.95783 * 1 2 3 30 30 H 1.08997 * 109.47096 * 292.95942 * 1 2 3 31 31 H 1.09006 * 109.46966 * 52.95937 * 1 2 3 32 32 H 1.09004 * 109.63497 * 54.55560 * 4 2 1 33 33 H 1.09005 * 109.45885 * 294.43452 * 4 2 1 34 34 H 1.09008 * 109.45722 * 178.49175 * 5 4 2 35 35 H 1.09000 * 109.45884 * 58.53084 * 5 4 2 36 36 H 1.09011 * 109.49835 * 301.41388 * 6 5 4 37 37 H 1.08991 * 109.52500 * 181.33741 * 6 5 4 38 38 H 1.09004 * 109.47475 * 300.63879 * 9 7 6 39 39 H 1.08997 * 109.47097 * 60.63731 * 9 7 6 40 40 H 1.09000 * 109.46975 * 180.63801 * 9 7 6 41 41 H 1.08996 * 109.47048 * 54.83782 * 13 11 10 42 42 H 1.09003 * 109.46802 * 294.84163 * 13 11 10 43 43 H 0.97000 * 120.00038 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.47491 * 270.14325 * 28 27 15 45 45 H 1.09004 * 109.47253 * 30.14346 * 28 27 15 46 46 H 1.09004 * 109.47267 * 150.14311 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 6 3.5712 -0.8497 1.1675 6 6 3.9616 -1.6627 -0.0690 7 6 3.4656 -0.9418 -1.3264 8 1 3.6532 -1.5636 -2.2019 9 6 4.1981 0.3927 -1.4787 10 7 2.0225 -0.6995 -1.1946 11 6 1.1674 -1.1061 -2.1536 12 8 -0.0072 -0.8121 -2.0832 13 6 1.6707 -1.9260 -3.3136 14 16 0.2719 -2.4410 -4.3403 15 6 1.1243 -3.3542 -5.5829 16 7 2.4320 -3.5488 -5.6532 17 7 2.7201 -4.2597 -6.6843 18 6 1.6057 -4.5677 -7.3438 19 6 1.5136 -5.3266 -8.5140 20 1 0.5488 -5.5123 -8.9625 21 6 2.6724 -5.8462 -9.1050 22 7 3.8411 -5.6208 -8.5620 23 14 2.5493 -6.8598 -10.6693 24 1 1.9356 -6.0389 -11.7439 25 1 3.9074 -7.2900 -11.0886 26 1 1.7068 -8.0567 -10.4185 27 7 0.5570 -3.9863 -6.6537 28 6 -0.8661 -4.0405 -6.9970 29 1 -0.3634 -1.0199 -0.1260 30 1 -0.3633 0.4009 0.9462 31 1 -0.3633 0.6191 -0.8203 32 1 1.6096 -1.7337 1.2889 33 1 1.7688 -0.1776 2.1389 34 1 3.9443 -1.3480 2.0624 35 1 4.0065 0.1472 1.0989 36 1 3.5061 -2.6515 -0.0129 37 1 5.0460 -1.7635 -0.1112 38 1 4.0135 1.0109 -0.6001 39 1 5.2683 0.2107 -1.5764 40 1 3.8344 0.9073 -2.3681 41 1 2.1893 -2.8077 -2.9373 42 1 2.3585 -1.3271 -3.9105 43 1 4.6436 -5.9803 -8.9714 44 1 -1.3220 -4.9085 -6.5207 45 1 -1.3591 -3.1334 -6.6474 46 1 -0.9762 -4.1201 -8.0786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279909451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:46 Heat of formation + Delta-G solvation = 39.198897 kcal Electronic energy + Delta-G solvation = -27325.370297 eV Core-core repulsion = 23570.631837 eV Total energy + Delta-G solvation = -3754.738461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75266 -40.49374 -37.77640 -33.92299 -33.69031 -33.30146 -33.00040 -30.22794 -29.30522 -28.42321 -26.70417 -26.45995 -25.49784 -23.76539 -22.33015 -21.07059 -20.80955 -20.43260 -18.52476 -17.36412 -16.93783 -16.47224 -16.02357 -15.55765 -15.36849 -15.07967 -14.71051 -14.50023 -14.30900 -14.11352 -13.70710 -13.55443 -13.37481 -12.99974 -12.92271 -12.79693 -12.40684 -12.22403 -12.19240 -12.04814 -11.92958 -11.77453 -11.39149 -11.29182 -11.23755 -11.06704 -10.92893 -10.84069 -10.66972 -10.42702 -10.18584 -9.73333 -9.61253 -9.13464 -8.71531 -8.66753 -8.40829 -8.38660 -6.79802 -6.65285 -4.57209 1.84272 2.59904 2.79626 2.92765 2.95774 3.06003 3.08049 3.36045 3.87127 4.24665 4.33784 4.41572 4.45540 4.57306 4.68621 4.78246 4.92833 5.09501 5.16174 5.21820 5.30795 5.32561 5.38351 5.42339 5.58214 5.61655 5.61943 5.65446 5.68121 5.73702 5.79925 5.82399 5.91353 5.91774 6.03424 6.07357 6.20293 6.28578 6.60730 6.76393 6.88789 7.24109 7.29206 7.49441 7.89072 8.13739 8.17332 8.70015 8.86137 10.27285 10.62890 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.002664 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.475306 B =10507.231190 C =11504.837777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.145 3.855 3 H 0.070 0.930 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.130 4.130 7 C 0.128 3.872 8 H 0.101 0.899 9 C -0.163 4.163 10 N -0.602 5.602 11 C 0.538 3.462 12 O -0.519 6.519 13 C -0.132 4.132 14 S 0.016 5.984 15 C 0.033 3.967 16 N -0.290 5.290 17 N -0.334 5.334 18 C 0.347 3.653 19 C -0.447 4.447 20 H 0.084 0.916 21 C 0.079 3.921 22 N -0.738 5.738 23 Si 0.921 3.079 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.265 1.265 27 N -0.513 5.513 28 C 0.101 3.899 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 9.016 15.372 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.043 3.957 3 H 0.088 0.912 4 C -0.169 4.169 5 C -0.158 4.158 6 C -0.168 4.168 7 C 0.024 3.976 8 H 0.119 0.881 9 C -0.221 4.221 10 N -0.337 5.337 11 C 0.325 3.675 12 O -0.396 6.396 13 C -0.284 4.284 14 S 0.242 5.758 15 C -0.339 4.339 16 N -0.136 5.136 17 N -0.181 5.181 18 C 0.102 3.898 19 C -0.488 4.488 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.362 5.362 23 Si 0.744 3.256 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.190 1.190 27 N -0.215 5.215 28 C -0.044 4.044 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.454 9.456 15.927 18.580 hybrid contribution 0.124 -0.942 -1.344 1.646 sum -1.330 8.514 14.583 16.939 Atomic orbital electron populations 1.22204 0.92534 1.04139 1.00749 1.21333 0.95762 0.94983 0.83657 0.91198 1.22091 0.95987 1.01496 0.97376 1.21556 0.95717 1.00643 0.97928 1.21926 1.01453 0.99371 0.94086 1.21420 0.79323 0.97309 0.99549 0.88118 1.22161 1.00610 0.96938 1.02423 1.48131 1.06943 1.58437 1.20203 1.19872 0.85883 0.79269 0.82491 1.90761 1.16708 1.56077 1.76048 1.23486 1.02829 1.03970 0.98125 1.85009 1.06424 1.62652 1.21707 1.25685 0.95122 1.13704 0.99415 1.74498 1.07902 1.14391 1.16854 1.75421 1.19513 1.19186 1.03978 1.21615 0.80877 0.93378 0.93910 1.18069 0.95073 1.30139 1.05482 0.89837 1.25789 0.94471 0.95759 0.98667 1.70003 0.98541 1.32220 1.35404 0.86180 0.78418 0.80103 0.80851 1.18966 1.20085 1.18967 1.46010 1.07354 1.46002 1.22178 1.21509 0.79626 1.01481 1.01823 0.91336 0.93954 0.90392 0.91359 0.90938 0.91708 0.91538 0.91196 0.90440 0.92057 0.91100 0.92044 0.86684 0.86514 0.90958 0.92504 0.91432 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 7.62 37.16 0.28 -1.30 16 2 C 0.15 1.46 3.10 -67.38 -0.21 1.25 16 3 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 4 C -0.13 -1.07 5.40 -26.39 -0.14 -1.22 16 5 C -0.12 -0.88 5.68 -26.69 -0.15 -1.03 16 6 C -0.13 -1.08 5.56 -26.61 -0.15 -1.23 16 7 C 0.13 1.25 3.12 -67.60 -0.21 1.04 16 8 H 0.10 1.10 5.92 -51.93 -0.31 0.79 16 9 C -0.16 -1.37 9.03 37.15 0.34 -1.04 16 10 N -0.60 -6.98 2.67 -157.48 -0.42 -7.40 16 11 C 0.54 7.92 7.51 -10.99 -0.08 7.83 16 12 O -0.52 -8.73 11.44 5.55 0.06 -8.67 16 13 C -0.13 -2.15 4.06 36.01 0.15 -2.00 16 14 S 0.02 0.32 20.93 -107.50 -2.25 -1.93 16 15 C 0.03 0.79 8.09 -87.27 -0.71 0.08 16 16 N -0.29 -7.84 11.62 30.89 0.36 -7.48 16 17 N -0.33 -9.96 10.48 31.26 0.33 -9.63 16 18 C 0.35 9.71 7.53 -154.81 -1.17 8.54 16 19 C -0.45 -11.86 9.04 -38.32 -0.35 -12.21 16 20 H 0.08 2.00 7.31 -52.48 -0.38 1.62 16 21 C 0.08 2.00 5.50 -17.29 -0.10 1.91 16 22 N -0.74 -20.16 11.94 55.56 0.66 -19.49 16 23 Si 0.92 18.48 29.56 -169.99 -5.03 13.46 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 N -0.51 -12.55 3.26 -123.18 -0.40 -12.95 16 28 C 0.10 1.88 10.87 59.84 0.65 2.53 16 29 H 0.07 0.92 6.83 -51.93 -0.35 0.57 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.04 6.67 -51.93 -0.35 0.69 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.07 0.44 6.50 -51.93 -0.34 0.10 16 36 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.46 5.73 -51.93 -0.30 0.17 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.11 1.86 7.68 -51.92 -0.40 1.46 16 42 H 0.12 1.90 7.95 -51.91 -0.41 1.48 16 43 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 46 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -33.26 374.35 -9.85 -43.11 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.97 Total: 2.18 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.84 Total: 3.16 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.53 Total: -56.95 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.06 Total: -8.67 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.25 Total: -1.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.26 -9.85 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279909451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.310 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds