Wall clock time and date at job start Tue Mar 31 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70167 * 2 1 4 4 C 1.53616 * 109.66574 * 120.59396 * 2 1 3 5 5 C 1.53043 * 109.24261 * 174.54951 * 4 2 1 6 6 C 1.53037 * 109.53852 * 298.51121 * 5 4 2 7 7 C 1.53193 * 109.31105 * 61.36343 * 6 5 4 8 8 H 1.09005 * 109.58477 * 185.57932 * 7 6 5 9 9 C 1.52992 * 109.70311 * 65.22532 * 7 6 5 10 10 N 1.46927 * 108.77734 * 305.36232 * 7 6 5 11 11 C 1.34769 * 120.63444 * 233.58500 * 10 7 6 12 12 O 1.21285 * 120.00206 * 185.58449 * 11 10 7 13 13 C 1.50702 * 120.00009 * 5.58605 * 11 10 7 14 14 S 1.80993 * 109.47247 * 174.84258 * 13 11 10 15 15 C 1.76201 * 100.00165 * 179.97438 * 14 13 11 16 16 N 1.32394 * 126.25816 * 359.97438 * 15 14 13 17 17 N 1.28513 * 110.20320 * 179.97438 * 16 15 14 18 18 C 1.33098 * 109.74546 * 359.97438 * 17 16 15 19 19 C 1.39778 * 126.55890 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99457 * 180.02562 * 19 18 17 21 21 C 1.40075 * 120.00485 * 0.02562 * 19 18 17 22 22 N 1.30822 * 119.99780 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47080 * 59.99589 * 23 21 19 25 25 H 1.48502 * 109.47367 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46833 * 299.99810 * 23 21 19 27 27 N 1.36670 * 126.25972 * 180.28427 * 15 14 13 28 28 C 1.46492 * 127.15431 * 0.03156 * 27 15 14 29 29 H 1.08997 * 109.47285 * 172.95783 * 1 2 3 30 30 H 1.08997 * 109.47096 * 292.95942 * 1 2 3 31 31 H 1.09006 * 109.46966 * 52.95937 * 1 2 3 32 32 H 1.09004 * 109.63497 * 54.55560 * 4 2 1 33 33 H 1.09005 * 109.45885 * 294.43452 * 4 2 1 34 34 H 1.09008 * 109.45722 * 178.49175 * 5 4 2 35 35 H 1.09000 * 109.45884 * 58.53084 * 5 4 2 36 36 H 1.09011 * 109.49835 * 301.41388 * 6 5 4 37 37 H 1.08991 * 109.52500 * 181.33741 * 6 5 4 38 38 H 1.09004 * 109.47475 * 300.63879 * 9 7 6 39 39 H 1.08997 * 109.47097 * 60.63731 * 9 7 6 40 40 H 1.09000 * 109.46975 * 180.63801 * 9 7 6 41 41 H 1.08996 * 109.47048 * 54.83782 * 13 11 10 42 42 H 1.09003 * 109.46802 * 294.84163 * 13 11 10 43 43 H 0.97000 * 120.00038 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.47491 * 270.14325 * 28 27 15 45 45 H 1.09004 * 109.47253 * 30.14346 * 28 27 15 46 46 H 1.09004 * 109.47267 * 150.14311 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 6 3.5712 -0.8497 1.1675 6 6 3.9616 -1.6627 -0.0690 7 6 3.4656 -0.9418 -1.3264 8 1 3.6532 -1.5636 -2.2019 9 6 4.1981 0.3927 -1.4787 10 7 2.0225 -0.6995 -1.1946 11 6 1.1674 -1.1061 -2.1536 12 8 -0.0072 -0.8121 -2.0832 13 6 1.6707 -1.9260 -3.3136 14 16 0.2719 -2.4410 -4.3403 15 6 1.1243 -3.3542 -5.5829 16 7 2.4320 -3.5488 -5.6532 17 7 2.7201 -4.2597 -6.6843 18 6 1.6057 -4.5677 -7.3438 19 6 1.5136 -5.3266 -8.5140 20 1 0.5488 -5.5123 -8.9625 21 6 2.6724 -5.8462 -9.1050 22 7 3.8411 -5.6208 -8.5620 23 14 2.5493 -6.8598 -10.6693 24 1 1.9356 -6.0389 -11.7439 25 1 3.9074 -7.2900 -11.0886 26 1 1.7068 -8.0567 -10.4185 27 7 0.5570 -3.9863 -6.6537 28 6 -0.8661 -4.0405 -6.9970 29 1 -0.3634 -1.0199 -0.1260 30 1 -0.3633 0.4009 0.9462 31 1 -0.3633 0.6191 -0.8203 32 1 1.6096 -1.7337 1.2889 33 1 1.7688 -0.1776 2.1389 34 1 3.9443 -1.3480 2.0624 35 1 4.0065 0.1472 1.0989 36 1 3.5061 -2.6515 -0.0129 37 1 5.0460 -1.7635 -0.1112 38 1 4.0135 1.0109 -0.6001 39 1 5.2683 0.2107 -1.5764 40 1 3.8344 0.9073 -2.3681 41 1 2.1893 -2.8077 -2.9373 42 1 2.3585 -1.3271 -3.9105 43 1 4.6436 -5.9803 -8.9714 44 1 -1.3220 -4.9085 -6.5207 45 1 -1.3591 -3.1334 -6.6474 46 1 -0.9762 -4.1201 -8.0786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279909451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:46 Heat of formation + Delta-G solvation = 20.408082 kcal Electronic energy + Delta-G solvation = -27326.185128 eV Core-core repulsion = 23570.631837 eV Total energy + Delta-G solvation = -3755.553292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45594 -41.74921 -38.77113 -35.62541 -35.17048 -34.75032 -33.88066 -31.50718 -31.06329 -29.46020 -28.21285 -27.45336 -27.38002 -24.58263 -23.21591 -22.79587 -22.46336 -21.73674 -19.56799 -19.22335 -18.01814 -17.91226 -17.29945 -17.13348 -16.68222 -16.45332 -16.12258 -15.85341 -15.32191 -15.23579 -15.01231 -14.74017 -14.45265 -14.27701 -13.97907 -13.82999 -13.79805 -13.70889 -13.33111 -13.15434 -12.92385 -12.89507 -12.76594 -12.76135 -12.51392 -12.05205 -12.02567 -11.89497 -11.81187 -11.67578 -11.52480 -11.42852 -11.30721 -10.58950 -10.37912 -10.29209 -10.26931 -9.62172 -8.55803 -8.54190 -6.58305 0.28064 1.14595 1.20095 1.40825 1.42293 1.57324 1.62128 1.91655 2.19017 2.44254 2.50289 3.27533 3.33991 3.69098 3.85974 3.90325 3.98792 4.01329 4.07605 4.18448 4.27639 4.34334 4.41290 4.44328 4.50007 4.61194 4.66602 4.70977 4.84779 4.86886 4.94904 4.95579 5.01626 5.03549 5.09771 5.15560 5.22135 5.26848 5.32054 5.37219 5.52736 5.56787 5.68714 6.01986 6.21545 6.25134 6.75802 6.91678 6.99674 8.41186 8.62850 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.002664 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.475306 B =10507.231190 C =11504.837777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.120 3.880 8 H 0.084 0.916 9 C -0.158 4.158 10 N -0.593 5.593 11 C 0.539 3.461 12 O -0.544 6.544 13 C -0.126 4.126 14 S 0.041 5.959 15 C 0.043 3.957 16 N -0.325 5.325 17 N -0.386 5.386 18 C 0.318 3.682 19 C -0.472 4.472 20 H 0.102 0.898 21 C 0.030 3.970 22 N -0.786 5.786 23 Si 1.006 2.994 24 H -0.254 1.254 25 H -0.271 1.271 26 H -0.255 1.255 27 N -0.521 5.521 28 C 0.093 3.907 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.285 0.715 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 9.563 16.303 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.154 4.154 6 C -0.166 4.166 7 C 0.017 3.983 8 H 0.102 0.898 9 C -0.216 4.216 10 N -0.326 5.326 11 C 0.325 3.675 12 O -0.424 6.424 13 C -0.278 4.278 14 S 0.267 5.733 15 C -0.331 4.331 16 N -0.170 5.170 17 N -0.232 5.232 18 C 0.072 3.928 19 C -0.512 4.512 20 H 0.120 0.880 21 C -0.191 4.191 22 N -0.411 5.411 23 Si 0.825 3.175 24 H -0.178 1.178 25 H -0.195 1.195 26 H -0.179 1.179 27 N -0.222 5.222 28 C -0.050 4.050 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.880 10.020 16.894 19.731 hybrid contribution 0.196 -0.992 -1.450 1.767 sum -1.684 9.028 15.444 17.968 Atomic orbital electron populations 1.22064 0.93591 1.02216 1.01108 1.21566 0.94966 0.95989 0.83596 0.89464 1.22068 0.96636 1.00749 0.96974 1.21558 0.94883 1.01283 0.97658 1.21926 1.02242 0.98648 0.93814 1.21608 0.78346 0.98344 0.99974 0.89809 1.22128 1.01117 0.95851 1.02487 1.48214 1.07412 1.57243 1.19750 1.19601 0.85877 0.79381 0.82659 1.90767 1.17629 1.57303 1.76668 1.23535 1.01637 1.04249 0.98409 1.84934 1.06942 1.61247 1.20220 1.26566 0.94973 1.11859 0.99659 1.74379 1.09596 1.15870 1.17163 1.75289 1.21507 1.21028 1.05424 1.22037 0.81586 0.94357 0.94843 1.18599 0.96511 1.30522 1.05575 0.87955 1.26968 0.93496 0.96413 1.02249 1.70145 0.99677 1.33724 1.37600 0.84910 0.78703 0.78229 0.75670 1.17807 1.19545 1.17850 1.46339 1.08953 1.45214 1.21691 1.21852 0.76824 1.03326 1.03014 0.93771 0.91516 0.92615 0.92736 0.88699 0.90298 0.90131 0.92580 0.88910 0.90540 0.89698 0.93359 0.86852 0.86728 0.90483 0.90772 0.89386 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 7.62 71.98 0.55 -2.36 16 2 C 0.14 2.57 3.10 45.12 0.14 2.71 16 3 H 0.09 1.36 7.48 -2.39 -0.02 1.34 16 4 C -0.13 -1.74 5.40 30.82 0.17 -1.57 16 5 C -0.12 -1.33 5.68 30.62 0.17 -1.15 16 6 C -0.13 -1.92 5.56 30.67 0.17 -1.75 16 7 C 0.12 2.26 3.12 44.97 0.14 2.40 16 8 H 0.08 1.86 5.92 -2.38 -0.01 1.85 16 9 C -0.16 -2.38 9.03 71.98 0.65 -1.73 16 10 N -0.59 -13.34 2.67 -770.54 -2.06 -15.40 16 11 C 0.54 15.97 7.51 87.66 0.66 16.63 16 12 O -0.54 -18.48 11.44 -3.04 -0.03 -18.52 16 13 C -0.13 -4.20 4.06 71.24 0.29 -3.91 16 14 S 0.04 1.60 20.93 -56.49 -1.18 0.42 16 15 C 0.04 2.12 8.09 179.18 1.45 3.57 16 16 N -0.33 -18.28 11.62 -56.17 -0.65 -18.93 16 17 N -0.39 -24.04 10.48 -55.02 -0.58 -24.62 16 18 C 0.32 18.31 7.53 133.23 1.00 19.31 16 19 C -0.47 -25.35 9.04 23.09 0.21 -25.14 16 20 H 0.10 4.87 7.31 -2.91 -0.02 4.85 16 21 C 0.03 1.53 5.50 85.29 0.47 1.99 16 22 N -0.79 -44.36 11.94 21.85 0.26 -44.10 16 23 Si 1.01 37.67 29.56 68.60 2.03 39.70 16 24 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 25 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 27 N -0.52 -25.73 3.26 -543.63 -1.77 -27.50 16 28 C 0.09 3.37 10.87 127.77 1.39 4.76 16 29 H 0.04 1.18 6.83 -2.39 -0.02 1.16 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.47 6.67 -2.38 -0.02 1.45 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.74 6.50 -2.39 -0.02 0.72 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.92 5.73 -2.38 -0.01 0.91 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 3.80 7.68 -2.40 -0.02 3.79 16 42 H 0.11 3.86 7.95 -2.39 -0.02 3.84 16 43 H 0.28 14.50 8.30 -92.71 -0.77 13.73 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.09 2.82 7.85 -2.38 -0.02 2.80 16 46 H 0.09 3.06 7.53 -2.39 -0.02 3.04 16 Total: -1.00 -75.81 374.35 4.45 -71.36 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.99 Total: 23.83 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 7.46 Total: 13.76 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -4.80 Total: -130.55 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.03 Total: -18.52 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.18 Total: 0.42 kcal Total: -75.81 4.45 -71.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279909451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.766 kcal (2) G-P(sol) polarization free energy of solvation -75.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds