Wall clock time and date at job start Tue Mar 31 2020 21:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46504 * 109.47417 * 179.97438 * 8 7 6 11 11 C 1.34774 * 119.99618 * 275.00242 * 10 8 7 12 12 O 1.21285 * 120.00117 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99735 * 179.97438 * 11 10 8 14 14 S 1.81009 * 109.46951 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99721 * 180.02562 * 14 13 11 16 16 N 1.32388 * 126.25976 * 0.02562 * 15 14 13 17 17 N 1.28514 * 110.20156 * 180.02562 * 16 15 14 18 18 C 1.33096 * 109.74863 * 359.97438 * 17 16 15 19 19 C 1.39772 * 126.56590 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00362 * 179.97438 * 19 18 17 21 21 C 1.40082 * 119.99779 * 359.97438 * 19 18 17 22 22 N 1.30809 * 120.00476 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99710 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47266 * 90.00138 * 23 21 19 25 25 H 1.48501 * 109.46735 * 209.99766 * 23 21 19 26 26 H 1.48496 * 109.47428 * 329.99851 * 23 21 19 27 27 N 1.36665 * 126.25511 * 179.71869 * 15 14 13 28 28 C 1.46500 * 127.15611 * 359.96241 * 27 15 14 29 29 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 34 34 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 36 36 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 37 37 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 40 40 H 0.96997 * 120.00148 * 94.99044 * 10 8 7 41 41 H 1.08995 * 109.47091 * 299.99566 * 13 11 10 42 42 H 1.09000 * 109.47289 * 60.00223 * 13 11 10 43 43 H 0.96994 * 120.00596 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.46608 * 90.02531 * 28 27 15 45 45 H 1.08993 * 109.47507 * 210.02504 * 28 27 15 46 46 H 1.08997 * 109.47015 * 330.03119 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 7 1.5510 -0.0312 2.4458 11 6 1.4219 -0.7041 3.6064 12 8 1.7096 -1.8811 3.6602 13 6 0.9199 0.0060 4.8372 14 16 0.8576 -1.1579 6.2220 15 6 0.2545 -0.0930 7.4897 16 7 -0.0411 1.1908 7.3590 17 7 -0.4542 1.6673 8.4788 18 6 -0.4494 0.7105 9.4039 19 6 -0.8317 0.8437 10.7417 20 1 -0.7859 -0.0082 11.4039 21 6 -1.2743 2.0824 11.2235 22 7 -1.3293 3.1144 10.4217 23 14 -1.7845 2.2606 13.0117 24 1 -0.6046 2.6449 13.8272 25 1 -2.8285 3.3106 13.1262 26 1 -2.3263 0.9683 13.5031 27 7 0.0007 -0.4429 8.7862 28 6 0.1723 -1.7638 9.3961 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6767 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2490 34 1 3.9334 -1.2354 -2.1389 35 1 3.9337 0.3057 -1.2486 36 1 3.7158 -2.4708 0.0005 37 1 5.1695 -1.4441 0.0006 38 1 3.9328 -1.2356 2.1398 39 1 3.9331 0.3056 1.2498 40 1 1.3207 0.9100 2.4026 41 1 1.5930 0.8275 5.0826 42 1 -0.0791 0.3989 4.6480 43 1 -1.6361 3.9720 10.7552 44 1 1.1803 -1.8482 9.8022 45 1 -0.5545 -1.8909 10.1983 46 1 0.0190 -2.5351 8.6413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280039598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:30 Heat of formation + Delta-G solvation = 6.145362 kcal Electronic energy + Delta-G solvation = -26380.452734 eV Core-core repulsion = 22624.280965 eV Total energy + Delta-G solvation = -3756.171770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50415 -40.27668 -38.37459 -34.36210 -33.70081 -33.31332 -32.77188 -30.82952 -29.36646 -28.73951 -26.52487 -26.38144 -25.49252 -22.98574 -21.59579 -20.90018 -20.73937 -20.49339 -19.95484 -17.44235 -17.05529 -16.75084 -15.94818 -15.52549 -15.41092 -14.86905 -14.78523 -14.64850 -14.46530 -14.35319 -13.84306 -13.66992 -13.47001 -13.26832 -12.80714 -12.75932 -12.51935 -12.24265 -12.22843 -12.19622 -11.85132 -11.50711 -11.39330 -11.30674 -11.20913 -10.93624 -10.88163 -10.77552 -10.48809 -10.40196 -10.24059 -9.89219 -9.70875 -9.62562 -9.15355 -8.69679 -8.41636 -8.38925 -6.80324 -6.65541 -4.57354 1.84208 2.60853 2.80231 2.91317 3.06091 3.09493 3.17128 3.35736 3.87025 4.24551 4.26784 4.37489 4.41358 4.52043 4.72629 4.77670 4.88138 5.08432 5.11239 5.15825 5.19287 5.31993 5.33417 5.39153 5.42223 5.57547 5.58184 5.67353 5.69181 5.71643 5.80600 5.84293 5.86366 5.91388 5.97716 6.03173 6.07430 6.13513 6.38732 6.76141 6.88954 7.23895 7.35518 7.49196 7.88885 8.14262 8.17652 8.69910 8.85975 10.27082 10.62646 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.002080 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.628283 B =13457.927716 C =13969.761766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.152 3.848 9 H 0.089 0.911 10 N -0.724 5.724 11 C 0.536 3.464 12 O -0.526 6.526 13 C -0.134 4.134 14 S 0.018 5.982 15 C 0.032 3.968 16 N -0.290 5.290 17 N -0.333 5.333 18 C 0.346 3.654 19 C -0.447 4.447 20 H 0.084 0.916 21 C 0.078 3.922 22 N -0.737 5.737 23 Si 0.921 3.079 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.262 1.262 27 N -0.513 5.513 28 C 0.100 3.900 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.402 0.598 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.279 0.721 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 -6.074 -18.683 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.048 3.952 9 H 0.107 0.893 10 N -0.376 5.376 11 C 0.321 3.679 12 O -0.402 6.402 13 C -0.285 4.285 14 S 0.244 5.756 15 C -0.340 4.340 16 N -0.137 5.137 17 N -0.181 5.181 18 C 0.102 3.898 19 C -0.487 4.487 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.361 5.361 23 Si 0.744 3.256 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.186 1.186 27 N -0.215 5.215 28 C -0.044 4.044 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.237 0.763 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.536 -6.480 -19.319 21.400 hybrid contribution -0.540 0.746 1.566 1.816 sum 5.996 -5.734 -17.754 19.597 Atomic orbital electron populations 1.21845 0.94537 1.02305 1.01991 1.21408 0.96194 0.99981 0.94156 0.90599 1.21556 0.95566 1.00895 0.96861 1.21577 0.95531 1.00892 0.97927 1.21491 1.00412 0.99596 0.93972 1.21946 0.95183 1.01194 0.98691 1.21008 0.93542 0.97505 0.83162 0.89341 1.45957 1.68102 1.14210 1.09355 1.19907 0.77104 0.86990 0.83857 1.90717 1.49360 1.15588 1.84551 1.23393 1.07370 1.03057 0.94730 1.85049 1.83423 1.09631 0.97514 1.25690 1.19999 0.98498 0.89785 1.74502 1.14009 1.03484 1.21656 1.75421 1.26950 1.21492 0.94227 1.21631 0.93456 0.79344 0.95406 1.18102 1.42193 0.97199 0.91196 0.89777 1.25796 0.94091 0.94933 0.99909 1.70003 1.29788 1.00662 1.35693 0.86120 0.78957 0.79092 0.81382 1.19375 1.20002 1.18643 1.46015 1.57433 1.10263 1.07834 1.21512 1.01799 0.82555 0.98581 0.92490 0.92222 0.92471 0.91522 0.91632 0.91897 0.91910 0.91729 0.91757 0.91157 0.91751 0.76314 0.86350 0.86371 0.91003 0.92480 0.90323 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.03 37.15 0.34 -0.76 16 2 C -0.10 -0.70 2.30 -90.62 -0.21 -0.91 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.11 -0.70 5.20 -26.73 -0.14 -0.83 16 5 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.13 -1.20 5.49 -26.73 -0.15 -1.34 16 8 C 0.15 1.43 1.90 -67.93 -0.13 1.30 16 9 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 10 N -0.72 -7.52 4.38 -53.80 -0.24 -7.76 16 11 C 0.54 7.61 7.81 -10.98 -0.09 7.52 16 12 O -0.53 -9.11 15.52 5.55 0.09 -9.03 16 13 C -0.13 -2.11 5.71 36.01 0.21 -1.90 16 14 S 0.02 0.35 20.92 -107.50 -2.25 -1.90 16 15 C 0.03 0.77 8.09 -87.28 -0.71 0.07 16 16 N -0.29 -7.86 11.62 30.89 0.36 -7.50 16 17 N -0.33 -9.98 10.48 31.26 0.33 -9.66 16 18 C 0.35 9.71 7.53 -154.81 -1.17 8.54 16 19 C -0.45 -11.85 9.04 -38.32 -0.35 -12.20 16 20 H 0.08 2.02 7.31 -52.49 -0.38 1.64 16 21 C 0.08 2.00 5.50 -17.30 -0.10 1.90 16 22 N -0.74 -20.20 11.94 55.56 0.66 -19.53 16 23 Si 0.92 18.51 29.56 -169.99 -5.03 13.49 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 N -0.51 -12.56 3.26 -123.18 -0.40 -12.96 16 28 C 0.10 1.88 10.87 59.85 0.65 2.53 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 3.31 8.39 -40.82 -0.34 2.97 16 41 H 0.12 1.84 8.14 -51.92 -0.42 1.41 16 42 H 0.12 1.83 8.14 -51.92 -0.42 1.40 16 43 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 46 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -34.12 387.71 -10.14 -44.26 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.36 Total: 2.75 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.15 Total: 1.99 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.71 Total: -57.41 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.25 Total: -1.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.12 -10.14 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.408 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds