Wall clock time and date at job start Tue Mar 31 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46504 * 109.47417 * 179.97438 * 8 7 6 11 11 C 1.34774 * 119.99618 * 275.00242 * 10 8 7 12 12 O 1.21285 * 120.00117 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99735 * 179.97438 * 11 10 8 14 14 S 1.81009 * 109.46951 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99721 * 180.02562 * 14 13 11 16 16 N 1.32388 * 126.25976 * 0.02562 * 15 14 13 17 17 N 1.28514 * 110.20156 * 180.02562 * 16 15 14 18 18 C 1.33096 * 109.74863 * 359.97438 * 17 16 15 19 19 C 1.39772 * 126.56590 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00362 * 179.97438 * 19 18 17 21 21 C 1.40082 * 119.99779 * 359.97438 * 19 18 17 22 22 N 1.30809 * 120.00476 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99710 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47266 * 90.00138 * 23 21 19 25 25 H 1.48501 * 109.46735 * 209.99766 * 23 21 19 26 26 H 1.48496 * 109.47428 * 329.99851 * 23 21 19 27 27 N 1.36665 * 126.25511 * 179.71869 * 15 14 13 28 28 C 1.46500 * 127.15611 * 359.96241 * 27 15 14 29 29 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 34 34 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 36 36 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 37 37 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 40 40 H 0.96997 * 120.00148 * 94.99044 * 10 8 7 41 41 H 1.08995 * 109.47091 * 299.99566 * 13 11 10 42 42 H 1.09000 * 109.47289 * 60.00223 * 13 11 10 43 43 H 0.96994 * 120.00596 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.46608 * 90.02531 * 28 27 15 45 45 H 1.08993 * 109.47507 * 210.02504 * 28 27 15 46 46 H 1.08997 * 109.47015 * 330.03119 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 7 1.5510 -0.0312 2.4458 11 6 1.4219 -0.7041 3.6064 12 8 1.7096 -1.8811 3.6602 13 6 0.9199 0.0060 4.8372 14 16 0.8576 -1.1579 6.2220 15 6 0.2545 -0.0930 7.4897 16 7 -0.0411 1.1908 7.3590 17 7 -0.4542 1.6673 8.4788 18 6 -0.4494 0.7105 9.4039 19 6 -0.8317 0.8437 10.7417 20 1 -0.7859 -0.0082 11.4039 21 6 -1.2743 2.0824 11.2235 22 7 -1.3293 3.1144 10.4217 23 14 -1.7845 2.2606 13.0117 24 1 -0.6046 2.6449 13.8272 25 1 -2.8285 3.3106 13.1262 26 1 -2.3263 0.9683 13.5031 27 7 0.0007 -0.4429 8.7862 28 6 0.1723 -1.7638 9.3961 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6767 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2490 34 1 3.9334 -1.2354 -2.1389 35 1 3.9337 0.3057 -1.2486 36 1 3.7158 -2.4708 0.0005 37 1 5.1695 -1.4441 0.0006 38 1 3.9328 -1.2356 2.1398 39 1 3.9331 0.3056 1.2498 40 1 1.3207 0.9100 2.4026 41 1 1.5930 0.8275 5.0826 42 1 -0.0791 0.3989 4.6480 43 1 -1.6361 3.9720 10.7552 44 1 1.1803 -1.8482 9.8022 45 1 -0.5545 -1.8909 10.1983 46 1 0.0190 -2.5351 8.6413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280039598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:29 Heat of formation + Delta-G solvation = -14.199503 kcal Electronic energy + Delta-G solvation = -26381.334954 eV Core-core repulsion = 22624.280965 eV Total energy + Delta-G solvation = -3757.053989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45136 -41.24752 -39.26560 -35.62406 -35.29338 -35.15295 -33.42320 -31.92928 -31.24108 -29.74064 -28.21981 -27.41206 -27.05328 -23.75916 -22.79140 -22.49522 -22.17834 -21.61197 -20.76792 -19.27915 -18.37702 -17.88900 -17.41624 -17.07043 -16.78057 -16.41273 -16.12511 -15.55559 -15.49079 -15.25829 -15.11083 -14.79824 -14.60594 -14.44917 -13.99992 -13.81996 -13.75078 -13.71006 -13.30641 -13.12973 -12.93972 -12.84462 -12.76784 -12.50026 -12.16283 -12.02391 -11.89893 -11.81161 -11.66469 -11.50832 -11.44580 -11.42759 -11.20383 -10.94479 -10.58583 -10.37549 -10.29544 -10.08462 -8.54903 -8.54238 -6.57846 0.29203 1.16647 1.19653 1.42455 1.42462 1.58526 1.61936 2.11258 2.19319 2.44459 2.50749 3.34163 3.54661 3.66286 3.77338 3.94471 4.01584 4.08248 4.17038 4.24244 4.36005 4.44507 4.45007 4.48331 4.53979 4.55106 4.61930 4.78118 4.84336 4.87369 4.96095 4.99731 5.06508 5.11342 5.17004 5.25732 5.28826 5.32377 5.36448 5.40759 5.45742 5.57184 5.58942 6.02730 6.22217 6.37172 6.76076 6.91994 7.06221 8.41350 8.63262 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.002080 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.628283 B =13457.927716 C =13969.761766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.129 4.129 8 C 0.152 3.848 9 H 0.068 0.932 10 N -0.705 5.705 11 C 0.543 3.457 12 O -0.560 6.560 13 C -0.130 4.130 14 S 0.040 5.960 15 C 0.044 3.956 16 N -0.326 5.326 17 N -0.386 5.386 18 C 0.317 3.683 19 C -0.471 4.471 20 H 0.102 0.898 21 C 0.029 3.971 22 N -0.787 5.787 23 Si 1.006 2.994 24 H -0.261 1.261 25 H -0.270 1.270 26 H -0.248 1.248 27 N -0.521 5.521 28 C 0.093 3.907 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.415 0.585 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.285 0.715 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.602 -6.591 -19.311 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.107 0.893 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.167 4.167 8 C 0.048 3.952 9 H 0.086 0.914 10 N -0.357 5.357 11 C 0.328 3.672 12 O -0.439 6.439 13 C -0.282 4.282 14 S 0.265 5.735 15 C -0.330 4.330 16 N -0.170 5.170 17 N -0.233 5.233 18 C 0.071 3.929 19 C -0.511 4.511 20 H 0.120 0.880 21 C -0.192 4.192 22 N -0.412 5.412 23 Si 0.825 3.175 24 H -0.186 1.186 25 H -0.195 1.195 26 H -0.172 1.172 27 N -0.222 5.222 28 C -0.050 4.050 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.252 0.748 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.862 -6.989 -19.987 22.258 hybrid contribution -0.557 0.802 1.564 1.844 sum 6.305 -6.186 -18.423 20.431 Atomic orbital electron populations 1.21852 0.94631 1.01814 1.02407 1.21385 0.96014 1.00420 0.93152 0.89261 1.21565 0.95685 1.00680 0.96795 1.21561 0.95319 1.01209 0.97435 1.21486 1.00807 0.99164 0.93860 1.21906 0.94709 1.01615 0.98496 1.21133 0.93891 0.96736 0.83477 0.91399 1.45865 1.66501 1.14756 1.08537 1.19601 0.76976 0.86431 0.84228 1.90709 1.51258 1.16896 1.85036 1.23471 1.07978 1.02531 0.94200 1.85028 1.82380 1.09162 0.96943 1.26578 1.16937 0.98490 0.90949 1.74376 1.16183 1.05099 1.21389 1.75287 1.28998 1.23516 0.95454 1.22052 0.94431 0.80353 0.96108 1.18615 1.42746 0.98546 0.91162 0.87957 1.26974 0.93212 0.93959 1.05067 1.70140 1.31005 1.01538 1.38482 0.84856 0.78630 0.79563 0.74444 1.18609 1.19508 1.17166 1.46344 1.56636 1.11364 1.07859 1.21852 1.03238 0.80449 0.99482 0.93449 0.92873 0.91019 0.89966 0.92164 0.90759 0.91178 0.92480 0.91125 0.93831 0.90788 0.74761 0.85963 0.85936 0.90497 0.90765 0.89131 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.03 71.98 0.65 -1.30 16 2 C -0.09 -1.11 2.30 -10.79 -0.02 -1.14 16 3 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 6 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 7 C -0.13 -2.24 5.49 30.59 0.17 -2.07 16 8 C 0.15 2.71 1.90 44.99 0.09 2.80 16 9 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 10 N -0.70 -14.04 4.38 -442.51 -1.94 -15.98 16 11 C 0.54 15.20 7.81 87.66 0.68 15.89 16 12 O -0.56 -19.38 15.52 -3.05 -0.05 -19.43 16 13 C -0.13 -4.06 5.71 71.24 0.41 -3.65 16 14 S 0.04 1.51 20.92 -56.49 -1.18 0.33 16 15 C 0.04 2.15 8.09 179.18 1.45 3.60 16 16 N -0.33 -18.14 11.62 -56.18 -0.65 -18.80 16 17 N -0.39 -23.95 10.48 -55.02 -0.58 -24.53 16 18 C 0.32 18.18 7.53 133.23 1.00 19.19 16 19 C -0.47 -25.21 9.04 23.09 0.21 -25.00 16 20 H 0.10 4.87 7.31 -2.91 -0.02 4.85 16 21 C 0.03 1.48 5.50 85.29 0.47 1.94 16 22 N -0.79 -44.33 11.94 21.85 0.26 -44.07 16 23 Si 1.01 37.67 29.56 68.60 2.03 39.70 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 25 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 26 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 27 N -0.52 -25.56 3.26 -543.63 -1.77 -27.34 16 28 C 0.09 3.35 10.87 127.77 1.39 4.74 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.76 7.45 -2.39 -0.02 0.74 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.42 6.24 8.39 -92.71 -0.78 5.46 16 41 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 42 H 0.12 3.76 8.14 -2.40 -0.02 3.74 16 43 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.09 3.04 7.54 -2.39 -0.02 3.02 16 46 H 0.09 2.80 7.85 -2.39 -0.02 2.78 16 Total: -1.00 -76.98 387.71 3.34 -73.64 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.21 Total: 24.80 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 7.01 Total: 11.66 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -4.68 Total: -130.71 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.18 Total: 0.33 kcal Total: -76.98 3.34 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.443 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds