Wall clock time and date at job start Tue Mar 31 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47501 * 240.00216 * 2 1 3 5 5 C 1.52996 * 109.47501 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47405 * 59.99818 * 5 4 2 7 7 C 1.53002 * 109.46940 * 300.00525 * 6 5 4 8 8 C 1.52996 * 109.47501 * 59.99533 * 7 6 5 9 9 H 1.09001 * 109.47066 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47084 * 60.00276 * 8 7 6 11 11 C 1.34777 * 120.00271 * 84.99619 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 N 1.32386 * 126.25656 * 0.02657 * 15 14 13 17 17 N 1.28512 * 110.20261 * 180.02562 * 16 15 14 18 18 C 1.33103 * 109.74782 * 359.97438 * 17 16 15 19 19 C 1.39771 * 126.56451 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99490 * 179.97438 * 19 18 17 21 21 C 1.40079 * 120.00395 * 359.96689 * 19 18 17 22 22 N 1.30812 * 119.99772 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47280 * 60.00572 * 23 21 19 25 25 H 1.48508 * 109.47023 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47373 * 300.00208 * 23 21 19 27 27 N 1.36667 * 126.26014 * 179.71236 * 15 14 13 28 28 C 1.46501 * 127.14958 * 359.97193 * 27 15 14 29 29 H 1.09003 * 109.47162 * 299.99557 * 1 2 3 30 30 H 1.09002 * 109.47281 * 60.00206 * 1 2 3 31 31 H 1.09004 * 109.46647 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46789 * 299.99948 * 4 2 1 33 33 H 1.09002 * 109.47197 * 59.99527 * 4 2 1 34 34 H 1.09001 * 109.47066 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47057 * 299.99784 * 5 4 2 36 36 H 1.09000 * 109.47041 * 59.99956 * 6 5 4 37 37 H 1.08995 * 109.47564 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.46789 * 299.99585 * 7 6 5 39 39 H 1.09002 * 109.47197 * 180.02562 * 7 6 5 40 40 H 0.97005 * 120.00266 * 265.00202 * 10 8 7 41 41 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 42 42 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 43 43 H 0.97000 * 119.99932 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.47686 * 90.02359 * 28 27 15 45 45 H 1.08999 * 109.47231 * 210.02412 * 28 27 15 46 46 H 1.09000 * 109.47342 * 330.02290 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 6 2.0406 -0.7209 1.2492 9 1 1.6772 -0.2067 2.1390 10 7 1.5528 -2.1022 1.2496 11 6 1.4246 -2.7714 2.4124 12 8 1.7127 -2.2298 3.4586 13 6 0.9233 -4.1926 2.4127 14 16 0.8622 -4.8106 4.1128 15 6 0.2612 -6.4415 3.8242 16 7 -0.0331 -6.9706 2.6469 17 7 -0.4459 -8.1787 2.7939 18 6 -0.4411 -8.5016 4.0852 19 6 -0.8222 -9.7273 4.6384 20 1 -0.7757 -9.8750 5.7072 21 6 -1.2646 -10.7639 3.8066 22 7 -1.3205 -10.5851 2.5119 23 14 -1.7746 -12.4018 4.5461 24 1 -2.9040 -12.1900 5.4867 25 1 -2.1990 -13.3237 3.4619 26 1 -0.6257 -12.9939 5.2773 27 7 0.0192 -7.3937 4.7743 28 6 0.2054 -7.2666 6.2218 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.9333 -1.2348 -2.1394 35 1 3.9330 0.3072 -1.2498 36 1 3.7177 -2.4693 -0.0001 37 1 5.1706 -1.4407 -0.0003 38 1 3.9335 0.3075 1.2487 39 1 3.9346 -1.2336 2.1389 40 1 1.3220 -2.5354 0.4128 41 1 1.5963 -4.8154 1.8233 42 1 -0.0759 -4.2255 1.9783 43 1 -1.6265 -11.3030 1.9359 44 1 -0.7139 -6.8960 6.6753 45 1 0.4512 -8.2412 6.6435 46 1 1.0174 -6.5681 6.4238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280039600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:32 Heat of formation + Delta-G solvation = -10.179189 kcal Electronic energy + Delta-G solvation = -26714.644757 eV Core-core repulsion = 22957.765102 eV Total energy + Delta-G solvation = -3756.879655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44967 -41.41205 -39.24387 -35.62171 -35.15109 -34.78418 -33.46769 -31.94516 -31.26172 -29.98828 -28.21958 -27.40932 -27.05329 -23.65627 -22.80107 -22.65122 -22.37347 -21.83310 -20.05305 -19.28570 -18.52070 -17.78270 -17.30338 -16.91051 -16.69827 -16.47705 -16.14427 -16.03605 -15.48236 -15.18408 -15.13171 -14.72840 -14.59575 -14.30163 -14.00547 -13.80062 -13.76232 -13.69965 -13.17864 -13.10200 -12.91878 -12.86578 -12.75956 -12.60922 -12.42357 -12.04287 -11.90110 -11.80785 -11.66545 -11.42918 -11.42342 -11.28038 -11.10109 -10.91862 -10.58349 -10.37386 -10.29214 -10.06949 -8.54551 -8.53932 -6.57752 0.29740 1.16979 1.20639 1.42497 1.44517 1.57486 1.62552 2.14870 2.19844 2.44696 2.50989 3.34374 3.57172 3.71247 3.80129 3.83427 4.01270 4.08343 4.17932 4.23136 4.35751 4.45087 4.48450 4.53812 4.54693 4.62010 4.67164 4.70488 4.85007 4.87485 4.95730 4.96333 5.06266 5.13491 5.17742 5.28512 5.31032 5.32448 5.38254 5.41504 5.49313 5.57364 5.59463 6.02891 6.21988 6.37653 6.76181 6.92168 7.07230 8.41468 8.63443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.002292 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.732061 B =12210.903866 C =12768.415495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.128 4.128 8 C 0.150 3.850 9 H 0.073 0.927 10 N -0.700 5.700 11 C 0.543 3.457 12 O -0.559 6.559 13 C -0.131 4.131 14 S 0.042 5.958 15 C 0.043 3.957 16 N -0.326 5.326 17 N -0.386 5.386 18 C 0.317 3.683 19 C -0.471 4.471 20 H 0.102 0.898 21 C 0.029 3.971 22 N -0.787 5.787 23 Si 1.006 2.994 24 H -0.254 1.254 25 H -0.271 1.271 26 H -0.254 1.254 27 N -0.520 5.520 28 C 0.092 3.908 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.412 0.588 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 18.605 -4.685 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.117 0.883 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.167 4.167 8 C 0.046 3.954 9 H 0.091 0.909 10 N -0.353 5.353 11 C 0.327 3.673 12 O -0.439 6.439 13 C -0.283 4.283 14 S 0.267 5.733 15 C -0.330 4.330 16 N -0.171 5.171 17 N -0.233 5.233 18 C 0.071 3.929 19 C -0.512 4.512 20 H 0.120 0.880 21 C -0.191 4.191 22 N -0.412 5.412 23 Si 0.825 3.175 24 H -0.178 1.178 25 H -0.196 1.196 26 H -0.178 1.178 27 N -0.222 5.222 28 C -0.050 4.050 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.249 0.751 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.978 19.393 -4.693 21.138 hybrid contribution -0.565 -1.724 0.078 1.816 sum 6.413 17.669 -4.615 19.355 Atomic orbital electron populations 1.21847 0.94692 1.01948 1.02234 1.21386 0.95929 1.00356 0.93096 0.88260 1.21636 0.95683 1.00589 0.97513 1.21526 0.95355 1.01212 0.97188 1.21507 1.00481 0.99183 0.94527 1.21893 0.94704 1.01986 0.98081 1.21104 0.93949 0.80856 0.99474 0.90928 1.45893 1.66308 1.14893 1.08197 1.19569 0.77035 0.86222 0.84431 1.90703 1.51291 1.69467 1.32391 1.23471 1.07872 0.97105 0.99805 1.85007 1.82414 0.97722 1.08205 1.26589 1.17096 0.99629 0.89705 1.74375 1.16246 1.05740 1.20693 1.75290 1.28999 1.04912 1.14090 1.22044 0.94353 0.89006 0.87516 1.18591 1.42862 0.93706 0.95993 0.87956 1.26968 0.93192 1.04320 0.94669 1.70141 1.30923 1.34400 1.05713 0.84912 0.79657 0.74459 0.78495 1.17834 1.19577 1.17809 1.46339 1.56540 1.11092 1.08214 1.21853 1.02796 1.04225 0.76153 0.93143 0.91088 0.93184 0.92291 0.90156 0.91408 0.90886 0.93004 0.91751 0.89481 0.93783 0.75057 0.86160 0.86074 0.90494 0.90764 0.89124 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.04 71.98 0.65 -1.26 16 2 C -0.09 -1.04 2.51 -10.79 -0.03 -1.07 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.20 5.03 30.59 0.15 -1.05 16 5 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 6 C -0.12 -1.74 5.77 30.60 0.18 -1.56 16 7 C -0.13 -2.14 5.60 30.59 0.17 -1.97 16 8 C 0.15 2.60 2.23 44.99 0.10 2.70 16 9 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 10 N -0.70 -13.99 3.54 -442.54 -1.57 -15.56 16 11 C 0.54 15.16 7.81 87.66 0.68 15.85 16 12 O -0.56 -19.15 15.53 -3.02 -0.05 -19.20 16 13 C -0.13 -4.11 5.71 71.24 0.41 -3.70 16 14 S 0.04 1.58 20.92 -56.49 -1.18 0.40 16 15 C 0.04 2.12 8.09 179.18 1.45 3.57 16 16 N -0.33 -18.18 11.62 -56.18 -0.65 -18.83 16 17 N -0.39 -24.00 10.48 -55.02 -0.58 -24.58 16 18 C 0.32 18.21 7.53 133.23 1.00 19.21 16 19 C -0.47 -25.27 9.04 23.09 0.21 -25.06 16 20 H 0.10 4.86 7.31 -2.91 -0.02 4.84 16 21 C 0.03 1.51 5.50 85.29 0.47 1.98 16 22 N -0.79 -44.37 11.94 21.85 0.26 -44.11 16 23 Si 1.01 37.65 29.56 68.60 2.03 39.67 16 24 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 25 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 27 N -0.52 -25.57 3.26 -543.63 -1.77 -27.34 16 28 C 0.09 3.35 10.87 127.77 1.39 4.74 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.72 7.45 -2.39 -0.02 0.70 16 32 H 0.06 0.66 6.51 -2.39 -0.02 0.65 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 0.88 7.60 -2.39 -0.02 0.86 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.41 6.72 6.65 -92.70 -0.62 6.10 16 41 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.28 14.50 8.30 -92.71 -0.77 13.73 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.09 3.04 7.54 -2.39 -0.02 3.02 16 46 H 0.09 2.80 7.85 -2.39 -0.02 2.78 16 Total: -1.00 -76.45 383.29 3.88 -72.57 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.37 Total: 25.66 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 7.02 Total: 11.32 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -4.31 Total: -130.42 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.18 Total: 0.40 kcal Total: -76.45 3.88 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds