Wall clock time and date at job start Tue Mar 31 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47097 * 2 1 4 4 C 1.53002 * 109.46849 * 119.99202 * 2 1 3 5 5 C 1.52998 * 109.47085 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47297 * 300.00502 * 5 4 2 7 7 C 1.52999 * 109.47129 * 60.00147 * 6 5 4 8 8 C 1.53000 * 109.47185 * 239.99490 * 2 1 3 9 9 H 1.09004 * 109.47129 * 299.99894 * 8 2 1 10 10 N 1.46498 * 109.47064 * 60.00380 * 8 2 1 11 11 C 1.34782 * 119.99673 * 205.00212 * 10 8 2 12 12 O 1.21280 * 119.99969 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99768 * 179.97438 * 11 10 8 14 14 S 1.80993 * 109.47156 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00166 * 180.02562 * 14 13 11 16 16 N 1.32387 * 126.26084 * 359.69028 * 15 14 13 17 17 N 1.28512 * 110.20310 * 179.81737 * 16 15 14 18 18 C 1.33098 * 109.74939 * 0.45501 * 17 16 15 19 19 C 1.39769 * 126.56510 * 179.74865 * 18 17 16 20 20 H 1.08004 * 119.99789 * 174.26085 * 19 18 17 21 21 C 1.40079 * 120.00183 * 354.26555 * 19 18 17 22 22 N 1.30811 * 120.00137 * 6.03097 * 21 19 18 23 23 Si 1.86802 * 120.00086 * 186.03492 * 21 19 18 24 24 H 1.48507 * 109.47168 * 94.97926 * 23 21 19 25 25 H 1.48504 * 109.47360 * 214.97881 * 23 21 19 26 26 H 1.48501 * 109.47287 * 334.98031 * 23 21 19 27 27 N 1.36675 * 126.26140 * 180.02562 * 15 14 13 28 28 C 1.46501 * 127.14690 * 359.96508 * 27 15 14 29 29 H 1.08994 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47165 * 300.00814 * 1 2 3 31 31 H 1.08999 * 109.46844 * 60.00531 * 1 2 3 32 32 H 1.08995 * 109.47224 * 300.00534 * 4 2 1 33 33 H 1.09004 * 109.47107 * 60.00325 * 4 2 1 34 34 H 1.09004 * 109.46652 * 60.00329 * 5 4 2 35 35 H 1.08999 * 109.47081 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.46605 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47211 * 299.99599 * 6 5 4 38 38 H 1.08998 * 109.47183 * 180.02562 * 7 6 5 39 39 H 1.08994 * 109.47522 * 59.99643 * 7 6 5 40 40 H 0.97001 * 119.99978 * 24.99592 * 10 8 2 41 41 H 1.09005 * 109.47308 * 299.99857 * 13 11 10 42 42 H 1.08998 * 109.47241 * 59.99671 * 13 11 10 43 43 H 0.97003 * 120.00217 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.47429 * 90.02881 * 28 27 15 45 45 H 1.09007 * 109.46772 * 210.02572 * 28 27 15 46 46 H 1.09003 * 109.47320 * 330.02183 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7217 1.2491 6 6 4.0795 -1.4434 -0.0001 7 6 3.5696 -0.7222 -1.2494 8 6 2.0400 -0.7214 -1.2492 9 1 1.6767 -1.7491 -1.2491 10 7 1.5518 -0.0308 -2.4454 11 6 1.4230 -0.7033 -3.6063 12 8 1.7119 -1.8800 -3.6607 13 6 0.9202 0.0069 -4.8367 14 16 0.8602 -1.1560 -6.2223 15 6 0.2570 -0.0909 -7.4897 16 7 -0.0449 1.1912 -7.3572 17 7 -0.4527 1.6694 -8.4781 18 6 -0.4467 0.7130 -9.4038 19 6 -0.8279 0.8469 -10.7418 20 1 -0.6938 0.0226 -11.4266 21 6 -1.3838 2.0503 -11.1947 22 7 -1.4379 3.0865 -10.3981 23 14 -2.0479 2.1754 -12.9362 24 1 -3.5097 1.9137 -12.9285 25 1 -1.7919 3.5385 -13.4670 26 1 -1.3702 1.1735 -13.7976 27 7 0.0092 -0.4389 -8.7880 28 6 0.1899 -1.7574 -9.4005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6765 -0.2072 2.1392 33 1 1.6766 -1.7488 1.2495 34 1 3.9336 0.3059 1.2488 35 1 3.9332 -1.2358 2.1389 36 1 5.1695 -1.4433 -0.0004 37 1 3.7159 -2.4709 0.0002 38 1 3.9322 -1.2366 -2.1393 39 1 3.9332 0.3053 -1.2496 40 1 1.3211 0.9104 -2.4019 41 1 -0.0791 0.3987 -4.6472 42 1 1.5924 0.8291 -5.0818 43 1 -1.8232 3.9197 -10.7116 44 1 -0.7304 -2.3330 -9.3020 45 1 0.4321 -1.6373 -10.4565 46 1 1.0026 -2.2828 -8.8988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280039601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:35 Heat of formation + Delta-G solvation = 6.108824 kcal Electronic energy + Delta-G solvation = -26380.779716 eV Core-core repulsion = 22624.606362 eV Total energy + Delta-G solvation = -3756.173354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50727 -40.27890 -38.37635 -34.36291 -33.70102 -33.31443 -32.77223 -30.83181 -29.37033 -28.74101 -26.52595 -26.38252 -25.49353 -22.98610 -21.59672 -20.90226 -20.73954 -20.49345 -19.95492 -17.44393 -17.05700 -16.75205 -15.95118 -15.52484 -15.41279 -14.86974 -14.78608 -14.64866 -14.46693 -14.35478 -13.84316 -13.66900 -13.47528 -13.27056 -12.81725 -12.74027 -12.52837 -12.25286 -12.22835 -12.19261 -11.85230 -11.50701 -11.39190 -11.32851 -11.20979 -10.92747 -10.88227 -10.77562 -10.48841 -10.39315 -10.24251 -9.89419 -9.72687 -9.60130 -9.15407 -8.70004 -8.41710 -8.39156 -6.80272 -6.66182 -4.57361 1.84029 2.60784 2.80063 2.91018 3.06113 3.09812 3.17072 3.35612 3.87082 4.24085 4.26728 4.37488 4.41276 4.52038 4.72579 4.77621 4.88096 5.08406 5.11183 5.15786 5.19324 5.31110 5.33155 5.39168 5.42188 5.57559 5.57825 5.67224 5.69170 5.71576 5.80545 5.84269 5.86308 5.91345 5.97690 6.03165 6.07313 6.13450 6.38706 6.76083 6.89518 7.23708 7.35448 7.49131 7.88577 8.14184 8.17831 8.69866 8.85892 10.26662 10.62298 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.002082 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.563684 B =13445.637496 C =13974.920862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.152 3.848 9 H 0.088 0.912 10 N -0.724 5.724 11 C 0.536 3.464 12 O -0.526 6.526 13 C -0.134 4.134 14 S 0.019 5.981 15 C 0.032 3.968 16 N -0.290 5.290 17 N -0.334 5.334 18 C 0.346 3.654 19 C -0.448 4.448 20 H 0.084 0.916 21 C 0.078 3.922 22 N -0.737 5.737 23 Si 0.921 3.079 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.262 1.262 27 N -0.513 5.513 28 C 0.101 3.899 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.402 0.598 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.279 0.721 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -6.060 18.664 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.048 3.952 9 H 0.107 0.893 10 N -0.376 5.376 11 C 0.321 3.679 12 O -0.402 6.402 13 C -0.286 4.286 14 S 0.244 5.756 15 C -0.340 4.340 16 N -0.137 5.137 17 N -0.181 5.181 18 C 0.102 3.898 19 C -0.488 4.488 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.361 5.361 23 Si 0.744 3.256 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.186 1.186 27 N -0.215 5.215 28 C -0.044 4.044 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.237 0.763 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.680 -6.467 19.299 21.422 hybrid contribution -0.641 0.717 -1.533 1.810 sum 6.038 -5.750 17.766 19.625 Atomic orbital electron populations 1.21846 0.94534 1.02305 1.01991 1.21410 0.96194 0.99982 0.94156 0.90600 1.21556 0.95567 1.00897 0.96861 1.21578 0.95532 1.00886 0.97931 1.21492 1.00412 0.99596 0.93974 1.21939 0.95191 1.01194 0.98695 1.20998 0.93553 0.97502 0.83165 0.89348 1.45959 1.68106 1.14221 1.09341 1.19906 0.77110 0.86984 0.83856 1.90715 1.49342 1.15608 1.84545 1.23392 1.07375 1.03062 0.94734 1.85046 1.83415 1.09634 0.97497 1.25696 1.19998 0.98654 0.89613 1.74500 1.13996 1.03505 1.21657 1.75419 1.27038 1.21364 0.94296 1.21625 0.93301 0.79374 0.95520 1.18105 1.39620 1.00282 0.90777 0.89751 1.25796 0.94609 0.94655 0.99633 1.70015 1.29377 1.01154 1.35572 0.86110 0.79657 0.78617 0.81175 1.19438 1.19998 1.18609 1.46025 1.57529 1.10356 1.07615 1.21513 1.01122 0.82758 0.99039 0.92489 0.92474 0.92218 0.91521 0.91633 0.91904 0.91894 0.91757 0.91725 0.91153 0.91749 0.76313 0.86357 0.86364 0.91019 0.92416 0.90354 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.04 37.16 0.34 -0.76 16 2 C -0.10 -0.70 2.30 -90.62 -0.21 -0.91 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.11 -0.70 5.20 -26.73 -0.14 -0.83 16 5 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.13 -1.20 5.49 -26.75 -0.15 -1.34 16 8 C 0.15 1.43 1.90 -67.95 -0.13 1.30 16 9 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 10 N -0.72 -7.52 4.38 -53.83 -0.24 -7.76 16 11 C 0.54 7.61 7.81 -10.98 -0.09 7.52 16 12 O -0.53 -9.11 15.52 5.56 0.09 -9.02 16 13 C -0.13 -2.11 5.71 36.00 0.21 -1.90 16 14 S 0.02 0.36 20.92 -107.50 -2.25 -1.89 16 15 C 0.03 0.78 8.09 -87.27 -0.71 0.07 16 16 N -0.29 -7.86 11.62 30.89 0.36 -7.50 16 17 N -0.33 -9.99 10.50 31.26 0.33 -9.66 16 18 C 0.35 9.71 7.53 -154.82 -1.17 8.55 16 19 C -0.45 -11.88 9.05 -38.32 -0.35 -12.23 16 20 H 0.08 2.03 7.26 -52.48 -0.38 1.65 16 21 C 0.08 2.01 5.49 -17.30 -0.09 1.91 16 22 N -0.74 -20.19 11.96 55.56 0.66 -19.52 16 23 Si 0.92 18.52 29.57 -169.99 -5.03 13.50 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 N -0.51 -12.55 3.26 -123.18 -0.40 -12.95 16 28 C 0.10 1.88 10.89 59.85 0.65 2.53 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.40 3.31 8.39 -40.82 -0.34 2.97 16 41 H 0.12 1.83 8.14 -51.91 -0.42 1.41 16 42 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 43 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.37 7.48 -51.92 -0.39 0.98 16 46 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -34.13 387.67 -10.13 -44.26 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.35 Total: 2.73 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.15 Total: 1.98 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.71 Total: -57.39 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.13 -10.13 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.366 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds