Wall clock time and date at job start Tue Mar 31 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47097 * 2 1 4 4 C 1.53002 * 109.46849 * 119.99202 * 2 1 3 5 5 C 1.52998 * 109.47085 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47297 * 300.00502 * 5 4 2 7 7 C 1.52999 * 109.47129 * 60.00147 * 6 5 4 8 8 C 1.53000 * 109.47185 * 239.99490 * 2 1 3 9 9 H 1.09004 * 109.47129 * 299.99894 * 8 2 1 10 10 N 1.46498 * 109.47064 * 60.00380 * 8 2 1 11 11 C 1.34782 * 119.99673 * 205.00212 * 10 8 2 12 12 O 1.21280 * 119.99969 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99768 * 179.97438 * 11 10 8 14 14 S 1.80993 * 109.47156 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00166 * 180.02562 * 14 13 11 16 16 N 1.32387 * 126.26084 * 359.69028 * 15 14 13 17 17 N 1.28512 * 110.20310 * 179.81737 * 16 15 14 18 18 C 1.33098 * 109.74939 * 0.45501 * 17 16 15 19 19 C 1.39769 * 126.56510 * 179.74865 * 18 17 16 20 20 H 1.08004 * 119.99789 * 174.26085 * 19 18 17 21 21 C 1.40079 * 120.00183 * 354.26555 * 19 18 17 22 22 N 1.30811 * 120.00137 * 6.03097 * 21 19 18 23 23 Si 1.86802 * 120.00086 * 186.03492 * 21 19 18 24 24 H 1.48507 * 109.47168 * 94.97926 * 23 21 19 25 25 H 1.48504 * 109.47360 * 214.97881 * 23 21 19 26 26 H 1.48501 * 109.47287 * 334.98031 * 23 21 19 27 27 N 1.36675 * 126.26140 * 180.02562 * 15 14 13 28 28 C 1.46501 * 127.14690 * 359.96508 * 27 15 14 29 29 H 1.08994 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47165 * 300.00814 * 1 2 3 31 31 H 1.08999 * 109.46844 * 60.00531 * 1 2 3 32 32 H 1.08995 * 109.47224 * 300.00534 * 4 2 1 33 33 H 1.09004 * 109.47107 * 60.00325 * 4 2 1 34 34 H 1.09004 * 109.46652 * 60.00329 * 5 4 2 35 35 H 1.08999 * 109.47081 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.46605 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47211 * 299.99599 * 6 5 4 38 38 H 1.08998 * 109.47183 * 180.02562 * 7 6 5 39 39 H 1.08994 * 109.47522 * 59.99643 * 7 6 5 40 40 H 0.97001 * 119.99978 * 24.99592 * 10 8 2 41 41 H 1.09005 * 109.47308 * 299.99857 * 13 11 10 42 42 H 1.08998 * 109.47241 * 59.99671 * 13 11 10 43 43 H 0.97003 * 120.00217 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.47429 * 90.02881 * 28 27 15 45 45 H 1.09007 * 109.46772 * 210.02572 * 28 27 15 46 46 H 1.09003 * 109.47320 * 330.02183 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7217 1.2491 6 6 4.0795 -1.4434 -0.0001 7 6 3.5696 -0.7222 -1.2494 8 6 2.0400 -0.7214 -1.2492 9 1 1.6767 -1.7491 -1.2491 10 7 1.5518 -0.0308 -2.4454 11 6 1.4230 -0.7033 -3.6063 12 8 1.7119 -1.8800 -3.6607 13 6 0.9202 0.0069 -4.8367 14 16 0.8602 -1.1560 -6.2223 15 6 0.2570 -0.0909 -7.4897 16 7 -0.0449 1.1912 -7.3572 17 7 -0.4527 1.6694 -8.4781 18 6 -0.4467 0.7130 -9.4038 19 6 -0.8279 0.8469 -10.7418 20 1 -0.6938 0.0226 -11.4266 21 6 -1.3838 2.0503 -11.1947 22 7 -1.4379 3.0865 -10.3981 23 14 -2.0479 2.1754 -12.9362 24 1 -3.5097 1.9137 -12.9285 25 1 -1.7919 3.5385 -13.4670 26 1 -1.3702 1.1735 -13.7976 27 7 0.0092 -0.4389 -8.7880 28 6 0.1899 -1.7574 -9.4005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6765 -0.2072 2.1392 33 1 1.6766 -1.7488 1.2495 34 1 3.9336 0.3059 1.2488 35 1 3.9332 -1.2358 2.1389 36 1 5.1695 -1.4433 -0.0004 37 1 3.7159 -2.4709 0.0002 38 1 3.9322 -1.2366 -2.1393 39 1 3.9332 0.3053 -1.2496 40 1 1.3211 0.9104 -2.4019 41 1 -0.0791 0.3987 -4.6472 42 1 1.5924 0.8291 -5.0818 43 1 -1.8232 3.9197 -10.7116 44 1 -0.7304 -2.3330 -9.3020 45 1 0.4321 -1.6373 -10.4565 46 1 1.0026 -2.2828 -8.8988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280039601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:35 Heat of formation + Delta-G solvation = -14.244156 kcal Electronic energy + Delta-G solvation = -26381.662288 eV Core-core repulsion = 22624.606362 eV Total energy + Delta-G solvation = -3757.055925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45404 -41.24911 -39.26710 -35.62436 -35.29351 -35.15364 -33.42322 -31.93126 -31.24476 -29.74144 -28.22039 -27.41293 -27.05416 -23.75907 -22.79244 -22.49630 -22.17898 -21.61140 -20.76707 -19.28096 -18.37881 -17.88974 -17.41810 -17.06906 -16.78350 -16.41195 -16.12673 -15.55487 -15.49213 -15.25934 -15.11162 -14.79716 -14.60924 -14.45284 -13.99228 -13.82185 -13.77302 -13.70063 -13.30733 -13.13162 -12.97591 -12.84413 -12.73917 -12.50111 -12.16232 -12.01752 -11.89229 -11.81197 -11.67124 -11.50892 -11.44050 -11.42700 -11.20424 -10.94421 -10.58874 -10.37718 -10.29600 -10.08455 -8.55948 -8.53780 -6.57821 0.29074 1.16607 1.19332 1.42389 1.42457 1.59152 1.61264 2.11252 2.19241 2.43807 2.50960 3.33097 3.54617 3.66299 3.77364 3.94511 4.01505 4.08089 4.17042 4.24238 4.35953 4.44543 4.45013 4.48304 4.54025 4.55125 4.61885 4.78114 4.84328 4.87615 4.96351 4.99717 5.06517 5.11329 5.16993 5.25712 5.28810 5.32290 5.36445 5.40762 5.45771 5.57157 5.58919 6.02494 6.22333 6.37164 6.75994 6.91933 7.06204 8.40959 8.62964 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.002082 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.563684 B =13445.637496 C =13974.920862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.129 4.129 8 C 0.152 3.848 9 H 0.068 0.932 10 N -0.705 5.705 11 C 0.543 3.457 12 O -0.560 6.560 13 C -0.130 4.130 14 S 0.040 5.960 15 C 0.044 3.956 16 N -0.326 5.326 17 N -0.386 5.386 18 C 0.317 3.683 19 C -0.471 4.471 20 H 0.102 0.898 21 C 0.029 3.971 22 N -0.786 5.786 23 Si 1.006 2.994 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.247 1.247 27 N -0.520 5.520 28 C 0.093 3.907 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.415 0.585 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.285 0.715 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -6.600 19.310 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.107 0.893 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.167 4.167 8 C 0.048 3.952 9 H 0.086 0.914 10 N -0.357 5.357 11 C 0.328 3.672 12 O -0.439 6.439 13 C -0.282 4.282 14 S 0.265 5.735 15 C -0.329 4.329 16 N -0.171 5.171 17 N -0.233 5.233 18 C 0.071 3.929 19 C -0.512 4.512 20 H 0.120 0.880 21 C -0.192 4.192 22 N -0.411 5.411 23 Si 0.825 3.175 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.170 1.170 27 N -0.222 5.222 28 C -0.050 4.050 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.252 0.748 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.960 -6.997 19.984 22.288 hybrid contribution -0.642 0.782 -1.538 1.841 sum 6.318 -6.215 18.446 20.464 Atomic orbital electron populations 1.21853 0.94634 1.01812 1.02405 1.21388 0.96008 1.00422 0.93156 0.89260 1.21565 0.95690 1.00679 0.96793 1.21562 0.95315 1.01205 0.97441 1.21488 1.00808 0.99164 0.93859 1.21899 0.94710 1.01615 0.98502 1.21123 0.93908 0.96731 0.83478 0.91409 1.45867 1.66507 1.14768 1.08523 1.19599 0.76981 0.86425 0.84227 1.90707 1.51239 1.16915 1.85030 1.23470 1.07979 1.02547 0.94202 1.85025 1.82356 1.09167 0.96935 1.26584 1.16943 0.98622 0.90789 1.74373 1.16169 1.05118 1.21390 1.75286 1.29092 1.23380 0.95534 1.22044 0.94265 0.80382 0.96229 1.18612 1.40229 1.01545 0.90765 0.87963 1.26973 0.94067 0.93640 1.04488 1.70149 1.30594 1.02086 1.38316 0.84846 0.78845 0.79003 0.74802 1.18846 1.19435 1.17040 1.46353 1.56715 1.11454 1.07659 1.21853 1.02840 0.80577 0.99739 0.93450 0.91024 0.92872 0.89970 0.92168 0.91171 0.90759 0.91122 0.92476 0.93823 0.90783 0.74759 0.85942 0.85953 0.90494 0.90713 0.89155 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.04 71.98 0.65 -1.30 16 2 C -0.09 -1.11 2.30 -10.79 -0.02 -1.14 16 3 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 4 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 6 C -0.12 -1.57 5.92 30.59 0.18 -1.38 16 7 C -0.13 -2.23 5.49 30.58 0.17 -2.06 16 8 C 0.15 2.71 1.90 44.98 0.09 2.80 16 9 H 0.07 1.54 7.58 -2.38 -0.02 1.52 16 10 N -0.70 -14.03 4.38 -442.60 -1.94 -15.97 16 11 C 0.54 15.20 7.81 87.66 0.68 15.88 16 12 O -0.56 -19.37 15.52 -3.03 -0.05 -19.42 16 13 C -0.13 -4.06 5.71 71.24 0.41 -3.65 16 14 S 0.04 1.52 20.92 -56.49 -1.18 0.34 16 15 C 0.04 2.15 8.09 179.18 1.45 3.60 16 16 N -0.33 -18.14 11.62 -56.18 -0.65 -18.79 16 17 N -0.39 -23.97 10.50 -55.03 -0.58 -24.55 16 18 C 0.32 18.19 7.53 133.23 1.00 19.20 16 19 C -0.47 -25.26 9.05 23.09 0.21 -25.05 16 20 H 0.10 4.87 7.26 -2.91 -0.02 4.85 16 21 C 0.03 1.50 5.49 85.29 0.47 1.97 16 22 N -0.79 -44.31 11.96 21.85 0.26 -44.05 16 23 Si 1.01 37.70 29.57 68.60 2.03 39.72 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 27 N -0.52 -25.54 3.26 -543.63 -1.77 -27.32 16 28 C 0.09 3.35 10.89 127.77 1.39 4.74 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.76 7.45 -2.39 -0.02 0.74 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.42 6.24 8.39 -92.71 -0.78 5.46 16 41 H 0.12 3.76 8.14 -2.39 -0.02 3.75 16 42 H 0.12 3.76 8.14 -2.40 -0.02 3.74 16 43 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.09 3.03 7.48 -2.38 -0.02 3.01 16 46 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 Total: -1.00 -76.98 387.67 3.34 -73.64 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.21 Total: 24.74 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 7.01 Total: 11.65 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -4.68 Total: -130.68 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.18 Total: 0.34 kcal Total: -76.98 3.34 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.395 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds