Wall clock time and date at job start Tue Mar 31 2020 21:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 C 1.53000 * 109.47629 * 120.00367 * 2 1 3 5 5 C 1.53000 * 109.47275 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46921 * 299.99720 * 5 4 2 7 7 C 1.53000 * 109.46915 * 60.00458 * 6 5 4 8 8 C 1.52995 * 109.47009 * 299.99180 * 7 6 5 9 9 H 1.09004 * 109.46947 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47506 * 300.00483 * 8 7 6 11 11 C 1.34774 * 119.99709 * 274.99685 * 10 8 7 12 12 O 1.21283 * 120.00215 * 0.02562 * 11 10 8 13 13 C 1.50699 * 119.99822 * 179.97438 * 11 10 8 14 14 S 1.81003 * 109.47335 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00336 * 179.97438 * 14 13 11 16 16 N 1.32397 * 126.25633 * 359.69161 * 15 14 13 17 17 N 1.28513 * 110.19875 * 179.81574 * 16 15 14 18 18 C 1.33089 * 109.75016 * 0.45112 * 17 16 15 19 19 C 1.39782 * 126.56745 * 179.74596 * 18 17 16 20 20 H 1.08000 * 120.00121 * 174.26498 * 19 18 17 21 21 C 1.40076 * 119.99798 * 354.27266 * 19 18 17 22 22 N 1.30813 * 120.00247 * 6.03127 * 21 19 18 23 23 Si 1.86795 * 120.00078 * 186.03493 * 21 19 18 24 24 H 1.48505 * 109.47555 * 94.97664 * 23 21 19 25 25 H 1.48502 * 109.47370 * 214.98103 * 23 21 19 26 26 H 1.48500 * 109.47260 * 334.97917 * 23 21 19 27 27 N 1.36661 * 126.26246 * 179.97438 * 15 14 13 28 28 C 1.46499 * 127.14995 * 0.04043 * 27 15 14 29 29 H 1.08997 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46978 * 299.99405 * 1 2 3 31 31 H 1.08994 * 109.46982 * 59.99948 * 1 2 3 32 32 H 1.09000 * 109.46451 * 300.00141 * 4 2 1 33 33 H 1.09001 * 109.47069 * 59.99479 * 4 2 1 34 34 H 1.09004 * 109.46625 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.46836 * 60.00058 * 5 4 2 36 36 H 1.08993 * 109.47208 * 300.00014 * 6 5 4 37 37 H 1.09003 * 109.46878 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47394 * 60.00039 * 7 6 5 39 39 H 1.09004 * 109.46942 * 179.97438 * 7 6 5 40 40 H 0.96995 * 120.00288 * 95.00310 * 10 8 7 41 41 H 1.09000 * 109.47468 * 300.00381 * 13 11 10 42 42 H 1.09001 * 109.47369 * 60.00000 * 13 11 10 43 43 H 0.97004 * 120.00434 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47736 * 89.97445 * 28 27 15 45 45 H 1.09008 * 109.47165 * 209.97632 * 28 27 15 46 46 H 1.08999 * 109.47019 * 329.96931 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0402 -0.7213 1.2492 5 6 3.5702 -0.7218 1.2487 6 6 4.0795 -1.4434 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 6 2.0395 -0.7216 -1.2493 9 1 1.6762 -0.2081 -2.1395 10 7 1.5507 -2.1026 -1.2491 11 6 1.4215 -2.7719 -2.4117 12 8 1.7103 -2.2310 -3.4582 13 6 0.9192 -4.1927 -2.4114 14 16 0.8582 -4.8115 -4.1113 15 6 0.2558 -6.4418 -3.8221 16 7 -0.0343 -6.9719 -2.6441 17 7 -0.4526 -8.1781 -2.7911 18 6 -0.4474 -8.5017 -4.0821 19 6 -0.8293 -9.7274 -4.6349 20 1 -0.8714 -9.8463 -5.7075 21 6 -1.1576 -10.8014 -3.7977 22 7 -1.2216 -10.6257 -2.5030 23 14 -1.5039 -12.4846 -4.5300 24 1 -0.2641 -13.3015 -4.5016 25 1 -2.5611 -13.1616 -3.7367 26 1 -1.9620 -12.3288 -5.9340 27 7 0.0077 -7.3923 -4.7722 28 6 0.1875 -7.2636 -6.2204 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6768 -0.2075 2.1391 33 1 1.6768 -1.7490 1.2492 34 1 3.9335 -1.2353 2.1390 35 1 3.9338 0.3057 1.2486 36 1 3.7159 -2.4709 -0.0003 37 1 5.1696 -1.4442 -0.0006 38 1 3.9332 0.3055 -1.2499 39 1 3.9328 -1.2359 -2.1397 40 1 1.3200 -2.5353 -0.4122 41 1 1.5920 -4.8158 -1.8223 42 1 -0.0798 -4.2248 -1.9766 43 1 -1.4485 -11.3695 -1.9232 44 1 1.1974 -7.5726 -6.4902 45 1 -0.5357 -7.8972 -6.7341 46 1 0.0344 -6.2253 -6.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280039603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:38 Heat of formation + Delta-G solvation = 9.486346 kcal Electronic energy + Delta-G solvation = -26714.500794 eV Core-core repulsion = 22958.473901 eV Total energy + Delta-G solvation = -3756.026894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52347 -40.46430 -38.29362 -33.85504 -33.69670 -33.31343 -32.81394 -30.92746 -29.42220 -28.88732 -26.52158 -26.38203 -25.49197 -22.94514 -21.75883 -21.26409 -20.81913 -20.39015 -19.26084 -17.50358 -17.17367 -16.41540 -15.81715 -15.70142 -15.36843 -15.32207 -14.79909 -14.57259 -14.37318 -14.28265 -13.85027 -13.59468 -13.45486 -13.22322 -12.84536 -12.70412 -12.40059 -12.24857 -12.23126 -12.18821 -11.92447 -11.80175 -11.38728 -11.32758 -11.20327 -10.92599 -10.83384 -10.60821 -10.39701 -10.28128 -10.24345 -9.91994 -9.72646 -9.60050 -9.13841 -8.69864 -8.41424 -8.39038 -6.79969 -6.66024 -4.57203 1.84779 2.62500 2.80505 2.91135 3.06241 3.09906 3.21633 3.35752 3.87230 4.24236 4.29444 4.41084 4.41428 4.44842 4.73576 4.80550 4.88542 5.10408 5.15262 5.16198 5.29478 5.31302 5.32285 5.34224 5.49419 5.53663 5.57939 5.66570 5.67832 5.74113 5.79134 5.89581 5.91419 5.93740 5.99706 6.06019 6.07399 6.12114 6.41644 6.76252 6.89650 7.23838 7.37029 7.49243 7.88745 8.15810 8.17977 8.70030 8.86018 10.26816 10.62453 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.002294 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.657563 B =12201.427136 C =12755.214525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.132 4.132 8 C 0.153 3.847 9 H 0.089 0.911 10 N -0.719 5.719 11 C 0.536 3.464 12 O -0.527 6.527 13 C -0.134 4.134 14 S 0.019 5.981 15 C 0.032 3.968 16 N -0.290 5.290 17 N -0.334 5.334 18 C 0.346 3.654 19 C -0.448 4.448 20 H 0.084 0.916 21 C 0.079 3.921 22 N -0.737 5.737 23 Si 0.920 3.080 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.262 1.262 27 N -0.513 5.513 28 C 0.101 3.899 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 17.809 4.883 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.170 4.170 8 C 0.048 3.952 9 H 0.107 0.893 10 N -0.373 5.373 11 C 0.321 3.679 12 O -0.403 6.403 13 C -0.286 4.286 14 S 0.244 5.756 15 C -0.340 4.340 16 N -0.137 5.137 17 N -0.181 5.181 18 C 0.102 3.898 19 C -0.488 4.488 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.361 5.361 23 Si 0.744 3.256 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.186 1.186 27 N -0.215 5.215 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.237 0.763 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.577 18.568 4.858 20.288 hybrid contribution -0.460 -1.712 -0.140 1.778 sum 6.117 16.856 4.718 18.542 Atomic orbital electron populations 1.21841 0.94559 1.02428 1.01857 1.21424 0.96175 0.99867 0.94230 0.89827 1.21622 0.95756 1.00717 0.97395 1.21550 0.95392 1.00771 0.98015 1.21511 1.00257 0.99825 0.94172 1.21930 0.95194 1.01153 0.98730 1.20954 0.93578 0.81980 0.98700 0.89340 1.45982 1.67887 1.14517 1.08930 1.19896 0.77147 0.86998 0.83870 1.90714 1.49421 1.69057 1.31114 1.23390 1.07327 0.95929 1.01921 1.85046 1.83413 1.01365 1.05734 1.25702 1.20062 0.98044 0.90158 1.74504 1.14087 1.05958 1.19113 1.75414 1.26797 1.03497 1.12411 1.21628 0.93517 0.87394 0.87284 1.18106 1.44043 0.92219 0.94431 0.89757 1.25791 0.93644 1.00682 0.94553 1.70016 1.29890 1.32475 1.03747 0.86111 0.78825 0.80772 0.79860 1.19439 1.19996 1.18616 1.46022 1.57147 1.12174 1.06168 1.21511 1.01794 1.01990 0.79133 0.92273 0.92487 0.92450 0.91571 0.91886 0.91937 0.92000 0.91718 0.92043 0.91196 0.91145 0.76289 0.86418 0.86430 0.91024 0.92423 0.90356 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.04 37.16 0.34 -0.74 16 2 C -0.10 -0.68 2.52 -90.61 -0.23 -0.91 16 3 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.75 5.03 -26.73 -0.13 -0.89 16 5 C -0.12 -0.79 5.92 -26.73 -0.16 -0.94 16 6 C -0.12 -0.96 5.77 -26.73 -0.15 -1.11 16 7 C -0.13 -1.17 5.60 -26.73 -0.15 -1.32 16 8 C 0.15 1.40 2.23 -67.93 -0.15 1.25 16 9 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 10 N -0.72 -7.41 3.54 -53.81 -0.19 -7.61 16 11 C 0.54 7.55 7.81 -10.99 -0.09 7.46 16 12 O -0.53 -9.05 15.52 5.56 0.09 -8.96 16 13 C -0.13 -2.11 5.71 36.00 0.21 -1.90 16 14 S 0.02 0.36 20.92 -107.50 -2.25 -1.89 16 15 C 0.03 0.78 8.09 -87.28 -0.71 0.07 16 16 N -0.29 -7.86 11.62 30.89 0.36 -7.50 16 17 N -0.33 -9.99 10.50 31.26 0.33 -9.66 16 18 C 0.35 9.71 7.53 -154.81 -1.17 8.54 16 19 C -0.45 -11.88 9.05 -38.32 -0.35 -12.23 16 20 H 0.08 2.03 7.27 -52.49 -0.38 1.65 16 21 C 0.08 2.01 5.49 -17.30 -0.09 1.92 16 22 N -0.74 -20.18 11.96 55.56 0.66 -19.51 16 23 Si 0.92 18.52 29.57 -169.99 -5.03 13.49 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 N -0.51 -12.54 3.26 -123.18 -0.40 -12.94 16 28 C 0.10 1.88 10.89 59.85 0.65 2.53 16 29 H 0.06 0.47 7.44 -51.93 -0.39 0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 3.46 6.65 -40.82 -0.27 3.19 16 41 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 42 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 43 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.37 7.48 -51.92 -0.39 0.98 16 46 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -33.93 383.23 -10.00 -43.93 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.17 Total: 3.13 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.18 Total: 1.73 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.76 Total: -57.22 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.93 -10.00 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.419 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds