Wall clock time and date at job start Tue Mar 31 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 C 1.53000 * 109.47629 * 120.00367 * 2 1 3 5 5 C 1.53000 * 109.47275 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46921 * 299.99720 * 5 4 2 7 7 C 1.53000 * 109.46915 * 60.00458 * 6 5 4 8 8 C 1.52995 * 109.47009 * 299.99180 * 7 6 5 9 9 H 1.09004 * 109.46947 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47506 * 300.00483 * 8 7 6 11 11 C 1.34774 * 119.99709 * 274.99685 * 10 8 7 12 12 O 1.21283 * 120.00215 * 0.02562 * 11 10 8 13 13 C 1.50699 * 119.99822 * 179.97438 * 11 10 8 14 14 S 1.81003 * 109.47335 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00336 * 179.97438 * 14 13 11 16 16 N 1.32397 * 126.25633 * 359.69161 * 15 14 13 17 17 N 1.28513 * 110.19875 * 179.81574 * 16 15 14 18 18 C 1.33089 * 109.75016 * 0.45112 * 17 16 15 19 19 C 1.39782 * 126.56745 * 179.74596 * 18 17 16 20 20 H 1.08000 * 120.00121 * 174.26498 * 19 18 17 21 21 C 1.40076 * 119.99798 * 354.27266 * 19 18 17 22 22 N 1.30813 * 120.00247 * 6.03127 * 21 19 18 23 23 Si 1.86795 * 120.00078 * 186.03493 * 21 19 18 24 24 H 1.48505 * 109.47555 * 94.97664 * 23 21 19 25 25 H 1.48502 * 109.47370 * 214.98103 * 23 21 19 26 26 H 1.48500 * 109.47260 * 334.97917 * 23 21 19 27 27 N 1.36661 * 126.26246 * 179.97438 * 15 14 13 28 28 C 1.46499 * 127.14995 * 0.04043 * 27 15 14 29 29 H 1.08997 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46978 * 299.99405 * 1 2 3 31 31 H 1.08994 * 109.46982 * 59.99948 * 1 2 3 32 32 H 1.09000 * 109.46451 * 300.00141 * 4 2 1 33 33 H 1.09001 * 109.47069 * 59.99479 * 4 2 1 34 34 H 1.09004 * 109.46625 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.46836 * 60.00058 * 5 4 2 36 36 H 1.08993 * 109.47208 * 300.00014 * 6 5 4 37 37 H 1.09003 * 109.46878 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47394 * 60.00039 * 7 6 5 39 39 H 1.09004 * 109.46942 * 179.97438 * 7 6 5 40 40 H 0.96995 * 120.00288 * 95.00310 * 10 8 7 41 41 H 1.09000 * 109.47468 * 300.00381 * 13 11 10 42 42 H 1.09001 * 109.47369 * 60.00000 * 13 11 10 43 43 H 0.97004 * 120.00434 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47736 * 89.97445 * 28 27 15 45 45 H 1.09008 * 109.47165 * 209.97632 * 28 27 15 46 46 H 1.08999 * 109.47019 * 329.96931 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0402 -0.7213 1.2492 5 6 3.5702 -0.7218 1.2487 6 6 4.0795 -1.4434 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 6 2.0395 -0.7216 -1.2493 9 1 1.6762 -0.2081 -2.1395 10 7 1.5507 -2.1026 -1.2491 11 6 1.4215 -2.7719 -2.4117 12 8 1.7103 -2.2310 -3.4582 13 6 0.9192 -4.1927 -2.4114 14 16 0.8582 -4.8115 -4.1113 15 6 0.2558 -6.4418 -3.8221 16 7 -0.0343 -6.9719 -2.6441 17 7 -0.4526 -8.1781 -2.7911 18 6 -0.4474 -8.5017 -4.0821 19 6 -0.8293 -9.7274 -4.6349 20 1 -0.8714 -9.8463 -5.7075 21 6 -1.1576 -10.8014 -3.7977 22 7 -1.2216 -10.6257 -2.5030 23 14 -1.5039 -12.4846 -4.5300 24 1 -0.2641 -13.3015 -4.5016 25 1 -2.5611 -13.1616 -3.7367 26 1 -1.9620 -12.3288 -5.9340 27 7 0.0077 -7.3923 -4.7722 28 6 0.1875 -7.2636 -6.2204 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6768 -0.2075 2.1391 33 1 1.6768 -1.7490 1.2492 34 1 3.9335 -1.2353 2.1390 35 1 3.9338 0.3057 1.2486 36 1 3.7159 -2.4709 -0.0003 37 1 5.1696 -1.4442 -0.0006 38 1 3.9332 0.3055 -1.2499 39 1 3.9328 -1.2359 -2.1397 40 1 1.3200 -2.5353 -0.4122 41 1 1.5920 -4.8158 -1.8223 42 1 -0.0798 -4.2248 -1.9766 43 1 -1.4485 -11.3695 -1.9232 44 1 1.1974 -7.5726 -6.4902 45 1 -0.5357 -7.8972 -6.7341 46 1 0.0344 -6.2253 -6.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280039603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:37 Heat of formation + Delta-G solvation = -10.234591 kcal Electronic energy + Delta-G solvation = -26715.355958 eV Core-core repulsion = 22958.473901 eV Total energy + Delta-G solvation = -3756.882058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.45317 -41.41282 -39.24351 -35.62197 -35.15300 -34.78502 -33.46757 -31.94610 -31.26551 -29.98854 -28.22114 -27.41066 -27.05305 -23.65638 -22.80299 -22.65221 -22.37458 -21.83416 -20.05439 -19.28883 -18.52344 -17.78540 -17.30475 -16.91540 -16.68931 -16.48384 -16.14518 -16.03376 -15.48507 -15.18930 -15.13044 -14.72746 -14.59017 -14.30617 -14.00832 -13.82633 -13.74629 -13.70425 -13.16899 -13.10392 -12.97364 -12.86587 -12.73832 -12.60871 -12.42382 -12.01083 -11.88455 -11.80844 -11.66976 -11.43924 -11.42560 -11.28012 -11.10142 -10.91947 -10.58784 -10.37645 -10.29355 -10.06985 -8.55724 -8.53524 -6.57712 0.29549 1.16824 1.19460 1.42494 1.44449 1.59217 1.61336 2.14823 2.19677 2.43947 2.51111 3.33242 3.57205 3.71244 3.80071 3.83393 4.01203 4.08211 4.17924 4.23100 4.35706 4.45044 4.48408 4.53818 4.54637 4.61980 4.67128 4.70496 4.84970 4.87774 4.95909 4.96597 5.06255 5.13472 5.17735 5.28562 5.31003 5.32398 5.38258 5.41486 5.49279 5.57236 5.59443 6.02615 6.22428 6.37640 6.76158 6.92057 7.07192 8.41118 8.63087 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.002294 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.657563 B =12201.427136 C =12755.214525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.128 4.128 8 C 0.150 3.850 9 H 0.073 0.927 10 N -0.700 5.700 11 C 0.543 3.457 12 O -0.559 6.559 13 C -0.131 4.131 14 S 0.042 5.958 15 C 0.044 3.956 16 N -0.326 5.326 17 N -0.386 5.386 18 C 0.317 3.683 19 C -0.472 4.472 20 H 0.102 0.898 21 C 0.030 3.970 22 N -0.787 5.787 23 Si 1.006 2.994 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.247 1.247 27 N -0.520 5.520 28 C 0.093 3.907 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.412 0.588 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 18.678 4.651 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.117 0.883 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.167 4.167 8 C 0.046 3.954 9 H 0.091 0.909 10 N -0.353 5.353 11 C 0.327 3.673 12 O -0.439 6.439 13 C -0.283 4.283 14 S 0.267 5.733 15 C -0.330 4.330 16 N -0.171 5.171 17 N -0.233 5.233 18 C 0.071 3.929 19 C -0.512 4.512 20 H 0.120 0.880 21 C -0.191 4.191 22 N -0.412 5.412 23 Si 0.825 3.175 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.170 1.170 27 N -0.222 5.222 28 C -0.050 4.050 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.249 0.751 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.945 19.468 4.651 21.187 hybrid contribution -0.494 -1.753 -0.054 1.822 sum 6.451 17.715 4.597 19.405 Atomic orbital electron populations 1.21846 0.94690 1.01949 1.02236 1.21389 0.95936 1.00352 0.93088 0.88250 1.21636 0.95678 1.00586 0.97519 1.21525 0.95364 1.01213 0.97182 1.21504 1.00483 0.99177 0.94531 1.21892 0.94714 1.01984 0.98073 1.21107 0.93935 0.80864 0.99477 0.90920 1.45892 1.66275 1.14930 1.08195 1.19567 0.77045 0.86211 0.84433 1.90704 1.51294 1.69483 1.32370 1.23471 1.07876 0.97108 0.99807 1.85010 1.82367 0.97716 1.08232 1.26596 1.16994 0.99735 0.89653 1.74379 1.16269 1.05750 1.20672 1.75281 1.28854 1.04957 1.14215 1.22047 0.94499 0.88863 0.87506 1.18615 1.44595 0.92400 0.95566 0.87968 1.26965 0.92482 1.05001 0.94669 1.70150 1.31115 1.34221 1.05668 0.84848 0.78744 0.74492 0.79429 1.18851 1.19427 1.17050 1.46348 1.56354 1.11280 1.08171 1.21853 1.03220 1.03775 0.76159 0.93182 0.91085 0.93144 0.90147 0.92299 0.91411 0.90890 0.93014 0.91758 0.89475 0.93788 0.75059 0.86173 0.86054 0.90502 0.90728 0.89154 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.04 71.98 0.65 -1.25 16 2 C -0.09 -1.04 2.52 -10.79 -0.03 -1.07 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.20 5.03 30.59 0.15 -1.05 16 5 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 6 C -0.12 -1.74 5.77 30.59 0.18 -1.57 16 7 C -0.13 -2.14 5.60 30.59 0.17 -1.97 16 8 C 0.15 2.59 2.23 44.99 0.10 2.69 16 9 H 0.07 1.54 7.58 -2.38 -0.02 1.52 16 10 N -0.70 -13.98 3.54 -442.53 -1.57 -15.54 16 11 C 0.54 15.15 7.81 87.66 0.68 15.83 16 12 O -0.56 -19.14 15.52 -3.04 -0.05 -19.19 16 13 C -0.13 -4.11 5.71 71.24 0.41 -3.70 16 14 S 0.04 1.58 20.92 -56.49 -1.18 0.40 16 15 C 0.04 2.14 8.09 179.18 1.45 3.59 16 16 N -0.33 -18.18 11.62 -56.18 -0.65 -18.83 16 17 N -0.39 -24.01 10.50 -55.02 -0.58 -24.58 16 18 C 0.32 18.21 7.53 133.23 1.00 19.21 16 19 C -0.47 -25.28 9.05 23.09 0.21 -25.07 16 20 H 0.10 4.87 7.27 -2.91 -0.02 4.85 16 21 C 0.03 1.53 5.49 85.29 0.47 2.00 16 22 N -0.79 -44.32 11.96 21.85 0.26 -44.06 16 23 Si 1.01 37.70 29.57 68.60 2.03 39.73 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 25 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 27 N -0.52 -25.54 3.26 -543.62 -1.77 -27.31 16 28 C 0.09 3.35 10.89 127.77 1.39 4.74 16 29 H 0.05 0.72 7.44 -2.39 -0.02 0.70 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.66 6.50 -2.39 -0.02 0.65 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 0.88 7.60 -2.39 -0.02 0.86 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.41 6.71 6.65 -92.71 -0.62 6.10 16 41 H 0.12 3.76 8.14 -2.40 -0.02 3.74 16 42 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 43 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.09 3.03 7.48 -2.38 -0.02 3.01 16 46 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 Total: -1.00 -76.46 383.23 3.89 -72.57 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.37 Total: 25.47 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.02 Total: 11.34 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -4.30 Total: -130.33 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.18 Total: 0.40 kcal Total: -76.46 3.89 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280039603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.335 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds