Wall clock time and date at job start Tue Mar 31 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.50238 * 2 1 4 4 C 1.53120 * 109.50294 * 239.87605 * 2 1 3 5 5 C 1.53120 * 109.15972 * 182.40242 * 4 2 1 6 6 C 1.53034 * 109.27663 * 57.65936 * 5 4 2 7 7 N 1.46850 * 109.52564 * 300.81923 * 6 5 4 8 8 C 1.46895 * 110.99945 * 185.83944 * 7 6 5 9 9 C 1.50701 * 109.47508 * 45.79090 * 8 7 6 10 10 C 1.33410 * 122.71569 * 94.99546 * 9 8 7 11 11 S 1.76169 * 108.06881 * 180.02562 * 10 9 8 12 12 C 1.70967 * 90.34161 * 359.97438 * 11 10 9 13 13 N 1.39006 * 124.94362 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00151 * 0.02751 * 13 12 11 15 15 O 1.21581 * 120.00183 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00002 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99818 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47056 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00224 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00240 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00251 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47203 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47160 * 120.00024 * 22 20 18 25 25 H 1.48498 * 109.47368 * 239.99969 * 22 20 18 26 26 N 1.29620 * 110.11188 * 359.73927 * 12 11 10 27 27 C 1.46850 * 111.19713 * 61.73898 * 7 6 5 28 28 H 1.08998 * 109.47019 * 299.92087 * 1 2 3 29 29 H 1.08993 * 109.47073 * 59.92392 * 1 2 3 30 30 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.52458 * 302.31577 * 4 2 1 32 32 H 1.09005 * 109.51651 * 62.50352 * 4 2 1 33 33 H 1.09000 * 109.49976 * 177.59581 * 5 4 2 34 34 H 1.09002 * 109.50465 * 297.67936 * 5 4 2 35 35 H 1.09007 * 109.46201 * 60.83416 * 6 5 4 36 36 H 1.09001 * 109.46272 * 180.79942 * 6 5 4 37 37 H 1.09001 * 109.46962 * 165.78905 * 8 7 6 38 38 H 1.09002 * 109.47442 * 285.78739 * 8 7 6 39 39 H 1.08000 * 125.96471 * 359.97438 * 10 9 8 40 40 H 0.97001 * 120.00072 * 180.02562 * 13 12 11 41 41 H 0.97001 * 120.00221 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47453 * 300.00488 * 17 16 14 43 43 H 1.09007 * 109.47095 * 60.00294 * 17 16 14 44 44 H 0.97000 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.45831 * 178.23975 * 27 7 6 46 46 H 1.08998 * 109.45719 * 58.27825 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2484 5 6 3.5712 -0.7724 -1.2104 6 6 4.0229 -1.4730 0.0730 7 7 3.5092 -0.7417 1.2382 8 6 4.0372 -1.3050 2.4879 9 6 5.5198 -1.5362 2.3479 10 6 6.4295 -0.6490 2.7544 11 16 8.0267 -1.3061 2.4074 12 6 7.3155 -2.7142 1.7484 13 7 8.0203 -3.7892 1.2192 14 6 9.3677 -3.7686 1.2016 15 8 9.9669 -2.8100 1.6490 16 7 10.0510 -4.8111 0.6890 17 6 11.5158 -4.7889 0.6704 18 6 12.0296 -6.0625 0.0500 19 1 11.3346 -6.8132 -0.2963 20 6 13.3869 -6.2694 -0.0757 21 7 14.2333 -5.3555 0.3464 22 14 14.0239 -7.8484 -0.8442 23 1 12.8768 -8.7072 -1.2336 24 1 14.8292 -7.5229 -2.0487 25 1 14.8720 -8.5700 0.1382 26 7 6.0236 -2.6356 1.8185 27 6 2.0409 -0.7229 1.2483 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5150 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6452 -1.7396 -1.2683 32 1 1.7156 -0.1879 -2.1397 33 1 3.9394 -1.3243 -2.0752 34 1 3.9678 0.2427 -1.2305 35 1 3.6374 -2.4925 0.0852 36 1 5.1120 -1.4962 0.1100 37 1 3.8538 -0.6087 3.3063 38 1 3.5401 -2.2519 2.6983 39 1 6.2227 0.3058 3.2149 40 1 7.5422 -4.5543 0.8627 41 1 9.5730 -5.5762 0.3324 42 1 11.8589 -3.9358 0.0851 43 1 11.8908 -4.7042 1.6904 44 1 15.1882 -5.5008 0.2577 45 1 1.6905 -0.2015 2.1390 46 1 1.6648 -1.7460 1.2551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362458225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:16 Heat of formation + Delta-G solvation = 13.307001 kcal Electronic energy + Delta-G solvation = -26377.716754 eV Core-core repulsion = 22621.855536 eV Total energy + Delta-G solvation = -3755.861218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44640 -39.75916 -38.69546 -35.24195 -34.49827 -34.05665 -32.48763 -32.15551 -30.00867 -27.41959 -27.11472 -26.55659 -24.48719 -23.20156 -22.64589 -21.69989 -21.13330 -19.90738 -19.72871 -18.35977 -17.56285 -16.63224 -16.36132 -16.06028 -15.56188 -15.43559 -15.02444 -14.68749 -14.61511 -14.42703 -14.34326 -13.98522 -13.56202 -13.38590 -13.10902 -12.89652 -12.72459 -12.34212 -12.22755 -12.12940 -12.04302 -11.88732 -11.30705 -11.20951 -11.01842 -10.99579 -10.86375 -10.69843 -10.53475 -10.44447 -10.37235 -9.70977 -9.55782 -9.49807 -8.98814 -8.90034 -8.49950 -8.29970 -7.84780 -6.26511 -4.34212 1.00787 1.38546 2.12139 2.64033 2.70875 3.18279 3.26054 3.28716 3.50755 3.88015 4.22462 4.40311 4.47950 4.59916 4.64778 4.77252 4.92944 5.08586 5.10329 5.18554 5.22245 5.28118 5.30644 5.37152 5.44852 5.48296 5.55314 5.61135 5.75916 5.78898 5.82198 5.84789 5.95551 5.99422 6.07686 6.20594 6.39683 6.62884 6.87911 6.95021 7.10817 7.28228 7.36543 7.58084 7.82819 7.92477 8.42686 8.62459 8.85345 9.32380 10.83483 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.002082 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.968977 B =13445.935840 C =14301.280379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.119 4.119 6 C 0.060 3.940 7 N -0.533 5.533 8 C 0.134 3.866 9 C 0.088 3.912 10 C -0.316 4.316 11 S 0.255 5.745 12 C 0.276 3.724 13 N -0.643 5.643 14 C 0.689 3.311 15 O -0.564 6.564 16 N -0.708 5.708 17 C 0.264 3.736 18 C -0.547 4.547 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 N -0.528 5.528 27 C 0.061 3.939 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.171 0.829 40 H 0.415 0.585 41 H 0.393 0.607 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.267 0.733 45 H 0.073 0.927 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.931 9.405 1.305 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.067 4.067 7 N -0.257 5.257 8 C 0.004 3.996 9 C -0.044 4.044 10 C -0.458 4.458 11 S 0.505 5.495 12 C -0.093 4.093 13 N -0.295 5.295 14 C 0.387 3.613 15 O -0.442 6.442 16 N -0.359 5.359 17 C 0.144 3.856 18 C -0.585 4.585 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.520 5.520 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 N -0.253 5.253 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.188 0.812 40 H 0.252 0.748 41 H 0.227 0.773 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -23.099 10.568 1.585 25.452 hybrid contribution -1.233 -2.441 -0.654 2.812 sum -24.332 8.127 0.931 25.671 Atomic orbital electron populations 1.21796 0.95067 1.01739 1.01780 1.21157 0.94904 1.00379 0.94339 0.90325 1.21647 0.95849 1.00294 0.97510 1.21617 0.95473 1.01576 0.97010 1.22098 1.00790 0.94601 0.89259 1.62066 1.07530 1.54084 1.02048 1.20560 0.87873 0.98577 0.92547 1.19342 0.96550 0.88991 0.99526 1.27245 0.98383 1.06418 1.13709 1.85265 1.02793 1.07861 1.53583 1.23113 0.91159 0.94861 1.00187 1.42080 1.05786 1.19172 1.62483 1.16107 0.79494 0.85119 0.80563 1.90827 1.66083 1.34335 1.52981 1.45770 1.10379 1.17893 1.61832 1.19194 0.70316 0.97970 0.98151 1.21205 0.92249 1.02992 1.42043 0.91690 1.24938 0.96517 0.97259 0.95196 1.69974 1.02826 1.33868 1.45316 0.86320 0.78954 0.82473 0.78926 1.19622 1.20723 1.20721 1.66174 1.08676 1.26101 1.24322 1.22131 0.87149 0.98931 0.98435 0.92602 0.92491 0.92839 0.92367 0.91976 0.91689 0.91269 0.94770 0.90119 0.89227 0.93428 0.81189 0.74755 0.77330 0.95056 0.95057 0.92330 0.90835 0.94923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.20 37.16 0.34 -0.54 16 2 C -0.09 -0.68 2.88 -90.54 -0.26 -0.94 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -0.94 5.29 -26.61 -0.14 -1.08 16 5 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16 6 C 0.06 0.69 4.81 -3.83 -0.02 0.67 16 7 N -0.53 -5.60 4.80 -236.11 -1.13 -6.73 16 8 C 0.13 1.43 5.72 -4.98 -0.03 1.40 16 9 C 0.09 1.15 4.77 -84.20 -0.40 0.75 16 10 C -0.32 -3.99 11.09 29.04 0.32 -3.67 16 11 S 0.25 3.89 20.21 -107.50 -2.17 1.71 16 12 C 0.28 4.33 8.19 -87.35 -0.72 3.62 16 13 N -0.64 -9.91 5.41 -17.48 -0.09 -10.01 16 14 C 0.69 13.13 8.53 -86.92 -0.74 12.39 16 15 O -0.56 -12.49 13.81 5.29 0.07 -12.41 16 16 N -0.71 -13.88 5.55 -66.41 -0.37 -14.25 16 17 C 0.26 6.58 5.43 -5.19 -0.03 6.55 16 18 C -0.55 -14.14 9.28 -34.44 -0.32 -14.46 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.07 13.29 55.43 0.74 -24.34 16 22 Si 0.91 20.22 29.54 -169.99 -5.02 15.19 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 N -0.53 -7.75 9.16 -11.28 -0.10 -7.85 16 27 C 0.06 0.52 4.71 -3.83 -0.02 0.51 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.08 1.11 5.78 -51.93 -0.30 0.81 16 37 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.42 5.19 8.83 -40.82 -0.36 4.83 16 41 H 0.39 6.49 8.34 -40.82 -0.34 6.15 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 46 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -29.85 383.44 -11.87 -41.71 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.29 Total: 5.66 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.27 Total: 5.53 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.96 Total: -63.18 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.17 Total: 1.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.85 -11.87 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362458225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.021 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds