Wall clock time and date at job start Tue Mar 31 2020 21:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.50238 * 2 1 4 4 C 1.53120 * 109.50294 * 239.87605 * 2 1 3 5 5 C 1.53120 * 109.15972 * 182.40242 * 4 2 1 6 6 C 1.53034 * 109.27663 * 57.65936 * 5 4 2 7 7 N 1.46850 * 109.52564 * 300.81923 * 6 5 4 8 8 C 1.46895 * 110.99945 * 185.83944 * 7 6 5 9 9 C 1.50701 * 109.47508 * 45.79090 * 8 7 6 10 10 C 1.33410 * 122.71569 * 94.99546 * 9 8 7 11 11 S 1.76169 * 108.06881 * 180.02562 * 10 9 8 12 12 C 1.70967 * 90.34161 * 359.97438 * 11 10 9 13 13 N 1.39006 * 124.94362 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00151 * 0.02751 * 13 12 11 15 15 O 1.21581 * 120.00183 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00002 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99818 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47056 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00224 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00240 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00251 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47203 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47160 * 120.00024 * 22 20 18 25 25 H 1.48498 * 109.47368 * 239.99969 * 22 20 18 26 26 N 1.29620 * 110.11188 * 359.73927 * 12 11 10 27 27 C 1.46850 * 111.19713 * 61.73898 * 7 6 5 28 28 H 1.08998 * 109.47019 * 299.92087 * 1 2 3 29 29 H 1.08993 * 109.47073 * 59.92392 * 1 2 3 30 30 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.52458 * 302.31577 * 4 2 1 32 32 H 1.09005 * 109.51651 * 62.50352 * 4 2 1 33 33 H 1.09000 * 109.49976 * 177.59581 * 5 4 2 34 34 H 1.09002 * 109.50465 * 297.67936 * 5 4 2 35 35 H 1.09007 * 109.46201 * 60.83416 * 6 5 4 36 36 H 1.09001 * 109.46272 * 180.79942 * 6 5 4 37 37 H 1.09001 * 109.46962 * 165.78905 * 8 7 6 38 38 H 1.09002 * 109.47442 * 285.78739 * 8 7 6 39 39 H 1.08000 * 125.96471 * 359.97438 * 10 9 8 40 40 H 0.97001 * 120.00072 * 180.02562 * 13 12 11 41 41 H 0.97001 * 120.00221 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47453 * 300.00488 * 17 16 14 43 43 H 1.09007 * 109.47095 * 60.00294 * 17 16 14 44 44 H 0.97000 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.45831 * 178.23975 * 27 7 6 46 46 H 1.08998 * 109.45719 * 58.27825 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2484 5 6 3.5712 -0.7724 -1.2104 6 6 4.0229 -1.4730 0.0730 7 7 3.5092 -0.7417 1.2382 8 6 4.0372 -1.3050 2.4879 9 6 5.5198 -1.5362 2.3479 10 6 6.4295 -0.6490 2.7544 11 16 8.0267 -1.3061 2.4074 12 6 7.3155 -2.7142 1.7484 13 7 8.0203 -3.7892 1.2192 14 6 9.3677 -3.7686 1.2016 15 8 9.9669 -2.8100 1.6490 16 7 10.0510 -4.8111 0.6890 17 6 11.5158 -4.7889 0.6704 18 6 12.0296 -6.0625 0.0500 19 1 11.3346 -6.8132 -0.2963 20 6 13.3869 -6.2694 -0.0757 21 7 14.2333 -5.3555 0.3464 22 14 14.0239 -7.8484 -0.8442 23 1 12.8768 -8.7072 -1.2336 24 1 14.8292 -7.5229 -2.0487 25 1 14.8720 -8.5700 0.1382 26 7 6.0236 -2.6356 1.8185 27 6 2.0409 -0.7229 1.2483 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5150 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6452 -1.7396 -1.2683 32 1 1.7156 -0.1879 -2.1397 33 1 3.9394 -1.3243 -2.0752 34 1 3.9678 0.2427 -1.2305 35 1 3.6374 -2.4925 0.0852 36 1 5.1120 -1.4962 0.1100 37 1 3.8538 -0.6087 3.3063 38 1 3.5401 -2.2519 2.6983 39 1 6.2227 0.3058 3.2149 40 1 7.5422 -4.5543 0.8627 41 1 9.5730 -5.5762 0.3324 42 1 11.8589 -3.9358 0.0851 43 1 11.8908 -4.7042 1.6904 44 1 15.1882 -5.5008 0.2577 45 1 1.6905 -0.2015 2.1390 46 1 1.6648 -1.7460 1.2551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362458225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:15 Heat of formation + Delta-G solvation = -6.652653 kcal Electronic energy + Delta-G solvation = -26378.582269 eV Core-core repulsion = 22621.855536 eV Total energy + Delta-G solvation = -3756.726733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73619 -40.97290 -39.62043 -36.61833 -36.11386 -35.05663 -34.38283 -32.89961 -31.13811 -29.28295 -27.93403 -27.30576 -25.83751 -24.54060 -23.74867 -22.68150 -22.54300 -21.13031 -20.55591 -19.74253 -18.92100 -18.06336 -17.73645 -17.34653 -16.84235 -16.77224 -16.30179 -16.09224 -15.40737 -15.39115 -15.24409 -15.11322 -15.05384 -14.48116 -14.14893 -14.09756 -13.92822 -13.83169 -13.36828 -13.09890 -12.93771 -12.79107 -12.75203 -12.65657 -12.37047 -12.17031 -11.97016 -11.94256 -11.53428 -11.46921 -11.34627 -11.14803 -11.12101 -10.85454 -10.73919 -10.16630 -10.08423 -9.35418 -9.09230 -8.30090 -6.45859 -0.16823 0.20303 0.95405 1.27776 1.44793 1.45680 1.52270 1.58562 2.06457 2.37131 3.02027 3.05876 3.13339 3.50392 3.81469 3.92218 3.96328 4.12653 4.28129 4.37234 4.44843 4.54363 4.61234 4.66888 4.72078 4.75250 4.82844 4.86364 4.88862 4.95192 4.98691 5.01808 5.13470 5.20827 5.23123 5.23538 5.32826 5.34651 5.38328 5.45283 5.54165 5.76264 5.87267 6.04054 6.16764 6.61302 6.71414 6.90871 7.19274 7.33434 8.81860 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.002082 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.968977 B =13445.935840 C =14301.280379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.066 3.934 7 N -0.536 5.536 8 C 0.137 3.863 9 C 0.076 3.924 10 C -0.290 4.290 11 S 0.215 5.785 12 C 0.255 3.745 13 N -0.627 5.627 14 C 0.694 3.306 15 O -0.597 6.597 16 N -0.702 5.702 17 C 0.283 3.717 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.983 3.017 23 H -0.255 1.255 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.522 5.522 27 C 0.061 3.939 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.046 0.954 39 H 0.200 0.800 40 H 0.429 0.571 41 H 0.410 0.590 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.269 0.731 45 H 0.089 0.911 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.548 9.014 1.033 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.062 4.062 7 N -0.261 5.261 8 C 0.007 3.993 9 C -0.056 4.056 10 C -0.432 4.432 11 S 0.464 5.536 12 C -0.114 4.114 13 N -0.281 5.281 14 C 0.392 3.608 15 O -0.477 6.477 16 N -0.355 5.355 17 C 0.161 3.839 18 C -0.594 4.594 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.806 3.194 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.246 5.246 27 C -0.066 4.066 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.064 0.936 39 H 0.217 0.783 40 H 0.269 0.731 41 H 0.247 0.753 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -25.815 10.163 1.308 27.774 hybrid contribution -0.551 -2.199 -0.519 2.325 sum -26.366 7.964 0.789 27.554 Atomic orbital electron populations 1.21753 0.93608 1.02013 1.02532 1.21145 0.96043 0.99779 0.93553 0.90758 1.21631 0.94387 1.00545 0.98421 1.21595 0.96852 1.00922 0.96138 1.21963 0.99123 0.94437 0.90672 1.62119 1.08900 1.53573 1.01507 1.20676 0.85938 0.99306 0.93389 1.19816 0.97983 0.88510 0.99271 1.27462 0.96170 1.07088 1.12434 1.85395 1.05286 1.08740 1.54149 1.23184 0.91507 0.95029 1.01663 1.41633 1.04403 1.19813 1.62214 1.16048 0.80489 0.84306 0.79950 1.90819 1.67406 1.35457 1.54034 1.45296 1.08614 1.18991 1.62561 1.18612 0.73074 0.96806 0.95436 1.21599 0.92882 1.03333 1.41581 0.89761 1.25979 0.96881 1.00844 0.95586 1.70122 1.03258 1.36285 1.46840 0.85138 0.78551 0.78000 0.77688 1.17820 1.20571 1.20554 1.66200 1.08034 1.26823 1.23572 1.22224 0.85666 0.99141 0.99616 0.91753 0.91903 0.92782 0.92461 0.90922 0.91737 0.91812 0.95903 0.92724 0.86753 0.93572 0.78255 0.73065 0.75324 0.98474 0.98448 0.92183 0.89271 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.20 71.98 0.66 -0.69 16 2 C -0.09 -1.13 2.88 -10.74 -0.03 -1.16 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.11 -1.64 5.29 30.67 0.16 -1.48 16 5 C -0.12 -2.19 6.09 30.65 0.19 -2.00 16 6 C 0.07 1.47 4.81 86.32 0.41 1.89 16 7 N -0.54 -10.28 4.80 -900.93 -4.32 -14.60 16 8 C 0.14 2.61 5.72 85.56 0.49 3.10 16 9 C 0.08 1.87 4.77 41.44 0.20 2.07 16 10 C -0.29 -6.89 11.09 66.73 0.74 -6.15 16 11 S 0.21 6.61 20.21 -56.49 -1.14 5.47 16 12 C 0.25 8.02 8.19 179.20 1.47 9.49 16 13 N -0.63 -19.44 5.41 -327.47 -1.77 -21.21 16 14 C 0.69 27.11 8.53 179.06 1.53 28.63 16 15 O -0.60 -27.53 13.81 -3.97 -0.05 -27.58 16 16 N -0.70 -28.03 5.55 -482.29 -2.68 -30.70 16 17 C 0.28 14.66 5.43 85.63 0.46 15.13 16 18 C -0.56 -28.89 9.28 25.60 0.24 -28.65 16 19 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 20 C 0.01 0.39 5.46 84.65 0.46 0.85 16 21 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 22 Si 0.98 41.16 29.54 68.60 2.03 43.19 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 26 N -0.52 -14.99 9.16 -189.59 -1.74 -16.72 16 27 C 0.06 0.89 4.71 86.33 0.41 1.30 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.05 1.50 5.78 -2.39 -0.01 1.48 16 37 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 39 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.43 10.53 8.83 -92.71 -0.82 9.71 16 41 H 0.41 13.36 8.34 -92.71 -0.77 12.59 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 44 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 46 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -65.94 383.44 -2.60 -68.54 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.59 Total: 24.97 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 7.39 Total: 22.33 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -10.23 Total: -136.91 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.14 Total: 5.47 kcal Total: -65.94 -2.60 -68.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362458225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.884 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds