Wall clock time and date at job start Tue Mar 31 2020 21:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50371 * 2 1 4 4 C 1.53125 * 109.50477 * 120.11092 * 2 1 3 5 5 C 1.53119 * 109.16107 * 177.59692 * 4 2 1 6 6 C 1.53037 * 109.27925 * 302.34557 * 5 4 2 7 7 N 1.46842 * 109.52055 * 59.17890 * 6 5 4 8 8 C 1.46909 * 110.99983 * 174.16006 * 7 6 5 9 9 C 1.50701 * 109.46921 * 294.21601 * 8 7 6 10 10 C 1.33408 * 122.71809 * 94.99531 * 9 8 7 11 11 S 1.76166 * 108.06834 * 179.97438 * 10 9 8 12 12 C 1.70969 * 90.34573 * 0.02562 * 11 10 9 13 13 N 1.39006 * 124.94555 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00032 * 359.97435 * 13 12 11 15 15 O 1.21575 * 120.00097 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99727 * 180.02562 * 14 13 12 17 17 C 1.46503 * 120.00000 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47302 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00314 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99976 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00008 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47314 * 119.99666 * 22 20 18 25 25 H 1.48501 * 109.47091 * 239.99470 * 22 20 18 26 26 N 1.29628 * 110.10451 * 359.76912 * 12 11 10 27 27 C 1.46850 * 111.20491 * 298.25883 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.08317 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.08508 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.08489 * 1 2 3 31 31 H 1.09004 * 109.52330 * 297.50416 * 4 2 1 32 32 H 1.08997 * 109.51634 * 57.68925 * 4 2 1 33 33 H 1.09000 * 109.49919 * 182.40378 * 5 4 2 34 34 H 1.08993 * 109.53765 * 62.31037 * 5 4 2 35 35 H 1.09005 * 109.45955 * 299.16606 * 6 5 4 36 36 H 1.09000 * 109.45363 * 179.19220 * 6 5 4 37 37 H 1.09001 * 109.46751 * 54.21190 * 8 7 6 38 38 H 1.08998 * 109.47139 * 174.21351 * 8 7 6 39 39 H 1.08000 * 125.96750 * 0.02562 * 10 9 8 40 40 H 0.96997 * 119.99620 * 179.97438 * 13 12 11 41 41 H 0.96999 * 120.00743 * 0.02562 * 16 14 13 42 42 H 1.09004 * 109.47440 * 300.00398 * 17 16 14 43 43 H 1.09007 * 109.46875 * 59.99680 * 17 16 14 44 44 H 0.97002 * 120.00194 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.45846 * 301.73061 * 27 7 6 46 46 H 1.08998 * 109.46551 * 181.76247 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7241 1.2486 5 6 3.5712 -0.7722 1.2106 6 6 4.0230 -1.4729 -0.0727 7 7 3.5093 -0.7418 -1.2379 8 6 4.0373 -1.3052 -2.4877 9 6 5.5270 -1.0855 -2.5478 10 6 6.4081 -2.0055 -2.1516 11 16 8.0261 -1.3504 -2.3889 12 6 7.3601 0.1014 -2.9989 13 7 8.0991 1.1951 -3.4344 14 6 9.4457 1.1583 -3.3927 15 8 10.0141 0.1686 -2.9737 16 7 10.1622 2.2190 -3.8145 17 6 11.6260 2.1792 -3.7687 18 6 12.1805 3.4793 -4.2916 19 1 11.5097 4.2573 -4.6251 20 6 13.5442 3.6752 -4.3451 21 7 14.3611 2.7277 -3.9394 22 14 14.2315 5.2864 -4.9939 23 1 13.1121 6.1806 -5.3843 24 1 15.0422 5.9406 -3.9356 25 1 15.0868 5.0187 -6.1780 26 7 6.0657 0.0314 -3.0010 27 6 2.0409 -0.7230 -1.2482 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5125 -0.8908 30 1 -0.3634 0.5152 0.8892 31 1 1.7156 -0.1876 2.1398 32 1 1.6452 -1.7394 1.2685 33 1 3.9395 -1.3239 2.0755 34 1 3.9684 0.2426 1.2303 35 1 3.6375 -2.4925 -0.0848 36 1 5.1121 -1.4960 -0.1096 37 1 3.8260 -2.3740 -2.5222 38 1 3.5629 -0.8134 -3.3369 39 1 6.1710 -2.9818 -1.7554 40 1 7.6456 1.9849 -3.7684 41 1 9.7088 3.0091 -4.1478 42 1 11.9535 2.0328 -2.7394 43 1 11.9866 1.3558 -4.3853 44 1 15.3205 2.8657 -3.9768 45 1 1.6648 -1.7461 -1.2548 46 1 1.6905 -0.2017 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362458226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:19 Heat of formation + Delta-G solvation = 10.351781 kcal Electronic energy + Delta-G solvation = -26177.393239 eV Core-core repulsion = 22421.403873 eV Total energy + Delta-G solvation = -3755.989366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33430 -39.72505 -38.76545 -35.24401 -34.49025 -34.08753 -32.46788 -32.18765 -29.98339 -27.40269 -27.03095 -26.79054 -24.37420 -23.23443 -22.53287 -21.81229 -21.09717 -19.96041 -19.78281 -18.35176 -17.52302 -16.61690 -16.24971 -16.04055 -15.58977 -15.43199 -15.05956 -14.71892 -14.66874 -14.41153 -14.39179 -13.97751 -13.57133 -13.37351 -13.15334 -12.93550 -12.75657 -12.35329 -12.21134 -12.11249 -12.09546 -11.97062 -11.27666 -11.23643 -11.00542 -10.97662 -10.91139 -10.68673 -10.58915 -10.46888 -10.35454 -9.67343 -9.48859 -9.47811 -8.95806 -8.88094 -8.52332 -8.29231 -7.82036 -6.25031 -4.32563 1.00918 1.41465 2.13747 2.67864 2.76824 3.19555 3.27301 3.30136 3.53692 3.86078 4.23813 4.38286 4.46049 4.56400 4.62737 4.78521 4.87769 5.05765 5.11821 5.12011 5.18078 5.25934 5.29859 5.32639 5.39722 5.42591 5.49161 5.52121 5.65456 5.68761 5.79212 5.82488 5.90492 5.98477 6.01416 6.16697 6.43560 6.65993 6.86452 6.91931 7.13294 7.30778 7.38397 7.60733 7.85056 8.00199 8.45409 8.64598 8.87797 9.33962 10.84982 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.001972 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.772571 B =14197.736689 C =14701.070447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.052 3.948 7 N -0.530 5.530 8 C 0.134 3.866 9 C 0.104 3.896 10 C -0.338 4.338 11 S 0.253 5.747 12 C 0.277 3.723 13 N -0.642 5.642 14 C 0.689 3.311 15 O -0.565 6.565 16 N -0.708 5.708 17 C 0.264 3.736 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 N -0.514 5.514 27 C 0.064 3.936 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.166 0.834 40 H 0.416 0.584 41 H 0.394 0.606 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.267 0.733 45 H 0.031 0.969 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.401 -8.623 6.696 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.076 4.076 7 N -0.254 5.254 8 C 0.004 3.996 9 C -0.030 4.030 10 C -0.480 4.480 11 S 0.503 5.497 12 C -0.091 4.091 13 N -0.295 5.295 14 C 0.388 3.612 15 O -0.443 6.443 16 N -0.359 5.359 17 C 0.144 3.856 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.520 5.520 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 N -0.238 5.238 27 C -0.064 4.064 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.184 0.816 40 H 0.253 0.747 41 H 0.227 0.773 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.590 -8.871 7.048 26.170 hybrid contribution -1.169 0.765 -0.735 1.579 sum -24.760 -8.105 6.313 26.806 Atomic orbital electron populations 1.21794 0.95036 1.01660 1.01872 1.21170 0.94930 1.00561 0.94246 0.90224 1.21645 0.95741 1.00235 0.97647 1.21578 0.95582 1.01801 0.96567 1.22162 1.00832 0.94449 0.90113 1.61768 1.07532 1.54475 1.01671 1.20479 0.88689 0.97533 0.92933 1.19338 0.96270 0.88175 0.99196 1.27251 0.99061 1.06348 1.15352 1.85208 1.02315 1.04968 1.57176 1.23155 0.90977 0.94539 1.00452 1.42081 1.05470 1.16422 1.65509 1.16100 0.79445 0.85433 0.80272 1.90819 1.67916 1.32496 1.53111 1.45762 1.10091 1.15076 1.64954 1.19191 0.70310 0.97950 0.98187 1.21212 0.92148 1.00391 1.44692 0.91667 1.24939 0.96661 0.97345 0.94981 1.69976 1.03598 1.32788 1.45662 0.86320 0.79067 0.82680 0.78604 1.19601 1.20732 1.20740 1.66084 1.07196 1.26185 1.24358 1.22120 0.86893 0.98747 0.98646 0.92887 0.92538 0.92490 0.91915 0.92404 0.91602 0.91055 0.95150 0.90175 0.93321 0.89298 0.81637 0.74655 0.77298 0.95070 0.95069 0.92351 0.95063 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.09 -0.69 2.88 -90.54 -0.26 -0.95 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -0.85 5.29 -26.61 -0.14 -0.99 16 5 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 6 C 0.05 0.51 5.24 -3.84 -0.02 0.48 16 7 N -0.53 -5.51 4.65 -236.11 -1.10 -6.61 16 8 C 0.13 1.42 5.41 -4.97 -0.03 1.39 16 9 C 0.10 1.39 5.57 -84.20 -0.47 0.92 16 10 C -0.34 -4.24 9.70 29.04 0.28 -3.96 16 11 S 0.25 3.90 20.21 -107.50 -2.17 1.73 16 12 C 0.28 4.51 8.19 -87.34 -0.72 3.80 16 13 N -0.64 -10.22 5.41 -17.48 -0.09 -10.32 16 14 C 0.69 13.36 8.53 -86.92 -0.74 12.62 16 15 O -0.57 -12.64 13.81 5.30 0.07 -12.57 16 16 N -0.71 -14.07 5.55 -66.41 -0.37 -14.44 16 17 C 0.26 6.63 5.43 -5.19 -0.03 6.60 16 18 C -0.55 -14.21 9.28 -34.44 -0.32 -14.53 16 19 H 0.07 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16 22 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 N -0.51 -7.96 10.58 -11.28 -0.12 -8.08 16 27 C 0.06 0.53 4.74 -3.83 -0.02 0.52 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.89 6.13 -51.93 -0.32 0.57 16 37 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.09 0.93 7.99 -51.93 -0.41 0.52 16 39 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.42 5.42 8.83 -40.82 -0.36 5.06 16 41 H 0.39 6.60 8.34 -40.82 -0.34 6.26 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -30.47 384.41 -11.95 -42.42 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.30 Total: 5.41 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.38 Total: 5.82 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.94 Total: -63.88 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.17 Total: 1.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.47 -11.95 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362458226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.768 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds