Wall clock time and date at job start Tue Mar 31 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50371 * 2 1 4 4 C 1.53125 * 109.50477 * 120.11092 * 2 1 3 5 5 C 1.53119 * 109.16107 * 177.59692 * 4 2 1 6 6 C 1.53037 * 109.27925 * 302.34557 * 5 4 2 7 7 N 1.46842 * 109.52055 * 59.17890 * 6 5 4 8 8 C 1.46909 * 110.99983 * 174.16006 * 7 6 5 9 9 C 1.50701 * 109.46921 * 294.21601 * 8 7 6 10 10 C 1.33408 * 122.71809 * 94.99531 * 9 8 7 11 11 S 1.76166 * 108.06834 * 179.97438 * 10 9 8 12 12 C 1.70969 * 90.34573 * 0.02562 * 11 10 9 13 13 N 1.39006 * 124.94555 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00032 * 359.97435 * 13 12 11 15 15 O 1.21575 * 120.00097 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99727 * 180.02562 * 14 13 12 17 17 C 1.46503 * 120.00000 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47302 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00314 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99976 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00008 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47314 * 119.99666 * 22 20 18 25 25 H 1.48501 * 109.47091 * 239.99470 * 22 20 18 26 26 N 1.29628 * 110.10451 * 359.76912 * 12 11 10 27 27 C 1.46850 * 111.20491 * 298.25883 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.08317 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.08508 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.08489 * 1 2 3 31 31 H 1.09004 * 109.52330 * 297.50416 * 4 2 1 32 32 H 1.08997 * 109.51634 * 57.68925 * 4 2 1 33 33 H 1.09000 * 109.49919 * 182.40378 * 5 4 2 34 34 H 1.08993 * 109.53765 * 62.31037 * 5 4 2 35 35 H 1.09005 * 109.45955 * 299.16606 * 6 5 4 36 36 H 1.09000 * 109.45363 * 179.19220 * 6 5 4 37 37 H 1.09001 * 109.46751 * 54.21190 * 8 7 6 38 38 H 1.08998 * 109.47139 * 174.21351 * 8 7 6 39 39 H 1.08000 * 125.96750 * 0.02562 * 10 9 8 40 40 H 0.96997 * 119.99620 * 179.97438 * 13 12 11 41 41 H 0.96999 * 120.00743 * 0.02562 * 16 14 13 42 42 H 1.09004 * 109.47440 * 300.00398 * 17 16 14 43 43 H 1.09007 * 109.46875 * 59.99680 * 17 16 14 44 44 H 0.97002 * 120.00194 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.45846 * 301.73061 * 27 7 6 46 46 H 1.08998 * 109.46551 * 181.76247 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7241 1.2486 5 6 3.5712 -0.7722 1.2106 6 6 4.0230 -1.4729 -0.0727 7 7 3.5093 -0.7418 -1.2379 8 6 4.0373 -1.3052 -2.4877 9 6 5.5270 -1.0855 -2.5478 10 6 6.4081 -2.0055 -2.1516 11 16 8.0261 -1.3504 -2.3889 12 6 7.3601 0.1014 -2.9989 13 7 8.0991 1.1951 -3.4344 14 6 9.4457 1.1583 -3.3927 15 8 10.0141 0.1686 -2.9737 16 7 10.1622 2.2190 -3.8145 17 6 11.6260 2.1792 -3.7687 18 6 12.1805 3.4793 -4.2916 19 1 11.5097 4.2573 -4.6251 20 6 13.5442 3.6752 -4.3451 21 7 14.3611 2.7277 -3.9394 22 14 14.2315 5.2864 -4.9939 23 1 13.1121 6.1806 -5.3843 24 1 15.0422 5.9406 -3.9356 25 1 15.0868 5.0187 -6.1780 26 7 6.0657 0.0314 -3.0010 27 6 2.0409 -0.7230 -1.2482 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5125 -0.8908 30 1 -0.3634 0.5152 0.8892 31 1 1.7156 -0.1876 2.1398 32 1 1.6452 -1.7394 1.2685 33 1 3.9395 -1.3239 2.0755 34 1 3.9684 0.2426 1.2303 35 1 3.6375 -2.4925 -0.0848 36 1 5.1121 -1.4960 -0.1096 37 1 3.8260 -2.3740 -2.5222 38 1 3.5629 -0.8134 -3.3369 39 1 6.1710 -2.9818 -1.7554 40 1 7.6456 1.9849 -3.7684 41 1 9.7088 3.0091 -4.1478 42 1 11.9535 2.0328 -2.7394 43 1 11.9866 1.3558 -4.3853 44 1 15.3205 2.8657 -3.9768 45 1 1.6648 -1.7461 -1.2548 46 1 1.6905 -0.2017 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362458226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:18 Heat of formation + Delta-G solvation = -10.264917 kcal Electronic energy + Delta-G solvation = -26178.287246 eV Core-core repulsion = 22421.403873 eV Total energy + Delta-G solvation = -3756.883373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68372 -40.85780 -39.68909 -36.60717 -36.10446 -35.09833 -34.37742 -32.84839 -31.11590 -29.26871 -27.93662 -27.38531 -25.75369 -24.50009 -23.68549 -22.72425 -22.47480 -21.21369 -20.53872 -19.76281 -18.89046 -18.05791 -17.71334 -17.21098 -16.81980 -16.76802 -16.27499 -16.11456 -15.47158 -15.40419 -15.21417 -15.09394 -15.04440 -14.48924 -14.13566 -14.09111 -13.94252 -13.79231 -13.39412 -13.09272 -12.93172 -12.78325 -12.76192 -12.70132 -12.31470 -12.14076 -11.96013 -11.91721 -11.52677 -11.46233 -11.34370 -11.13163 -11.08739 -10.84788 -10.69469 -10.16134 -10.07339 -9.28687 -9.07749 -8.29505 -6.45189 -0.17505 0.21634 0.96347 1.29571 1.45367 1.46258 1.55765 1.59258 2.09306 2.37833 3.06286 3.06597 3.13011 3.51508 3.83214 3.94900 3.97844 4.16012 4.28346 4.36791 4.45686 4.53558 4.58729 4.63987 4.67065 4.74725 4.83587 4.85004 4.87915 4.94940 4.99164 5.02614 5.14430 5.23746 5.24201 5.25451 5.33303 5.35648 5.39434 5.46080 5.54804 5.77110 5.88432 6.11892 6.21079 6.62567 6.76864 6.93206 7.20079 7.34307 8.82466 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.001972 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.772571 B =14197.736689 C =14701.070447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.061 0.939 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.054 3.946 7 N -0.548 5.548 8 C 0.137 3.863 9 C 0.090 3.910 10 C -0.307 4.307 11 S 0.215 5.785 12 C 0.254 3.746 13 N -0.627 5.627 14 C 0.694 3.306 15 O -0.598 6.598 16 N -0.702 5.702 17 C 0.283 3.717 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.983 3.017 23 H -0.255 1.255 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.515 5.515 27 C 0.065 3.935 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.198 0.802 40 H 0.430 0.570 41 H 0.411 0.589 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.269 0.731 45 H 0.043 0.957 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.868 -8.357 6.578 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.074 4.074 7 N -0.273 5.273 8 C 0.007 3.993 9 C -0.043 4.043 10 C -0.449 4.449 11 S 0.464 5.536 12 C -0.114 4.114 13 N -0.281 5.281 14 C 0.392 3.608 15 O -0.478 6.478 16 N -0.355 5.355 17 C 0.161 3.839 18 C -0.594 4.594 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.806 3.194 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.205 1.205 26 N -0.239 5.239 27 C -0.062 4.062 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.215 0.785 40 H 0.270 0.730 41 H 0.247 0.753 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.155 -8.589 6.923 28.387 hybrid contribution -0.537 0.568 -0.634 1.006 sum -26.692 -8.021 6.289 28.572 Atomic orbital electron populations 1.21749 0.93616 1.02269 1.02226 1.21152 0.96057 0.99442 0.94171 0.92044 1.21621 0.94623 1.00831 0.97771 1.21572 0.96627 1.00664 0.96633 1.22135 0.99811 0.95226 0.90243 1.61735 1.08842 1.55039 1.01670 1.20517 0.86608 0.98921 0.93209 1.19855 0.97841 0.87567 0.99061 1.27462 0.96660 1.07164 1.13582 1.85328 1.04930 1.05680 1.57612 1.23245 0.91322 0.94750 1.02090 1.41649 1.04114 1.17120 1.65215 1.16043 0.80416 0.84629 0.79689 1.90811 1.69191 1.33619 1.54160 1.45295 1.08339 1.16185 1.65652 1.18614 0.73056 0.96917 0.95349 1.21604 0.92766 1.00790 1.44228 0.89753 1.25982 0.97136 1.01117 0.95068 1.70123 1.04027 1.35268 1.47104 0.85134 0.78502 0.78025 0.77697 1.17816 1.20565 1.20545 1.66110 1.06719 1.27177 1.23891 1.22154 0.85603 0.99470 0.98992 0.92096 0.92328 0.92068 0.91325 0.91421 0.90613 0.93050 0.93774 0.91887 0.91101 0.89242 0.78538 0.73026 0.75307 0.98489 0.98426 0.92189 0.93915 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.20 71.98 0.66 -0.73 16 2 C -0.09 -1.22 2.88 -10.74 -0.03 -1.25 16 3 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 4 C -0.11 -1.42 5.29 30.68 0.16 -1.26 16 5 C -0.12 -1.88 6.09 30.65 0.19 -1.69 16 6 C 0.05 0.94 5.24 86.33 0.45 1.39 16 7 N -0.55 -10.39 4.65 -900.90 -4.19 -14.58 16 8 C 0.14 2.61 5.41 85.56 0.46 3.08 16 9 C 0.09 2.25 5.57 41.44 0.23 2.48 16 10 C -0.31 -7.21 9.70 66.73 0.65 -6.56 16 11 S 0.21 6.66 20.21 -56.49 -1.14 5.52 16 12 C 0.25 8.25 8.19 179.20 1.47 9.71 16 13 N -0.63 -20.01 5.41 -327.47 -1.77 -21.79 16 14 C 0.69 27.52 8.53 179.06 1.53 29.05 16 15 O -0.60 -27.80 13.81 -3.95 -0.05 -27.85 16 16 N -0.70 -28.38 5.55 -482.30 -2.68 -31.05 16 17 C 0.28 14.75 5.43 85.63 0.46 15.22 16 18 C -0.56 -29.05 9.28 25.60 0.24 -28.81 16 19 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 20 C 0.01 0.38 5.46 84.65 0.46 0.84 16 21 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 22 Si 0.98 41.34 29.54 68.60 2.03 43.37 16 23 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 N -0.52 -15.52 10.58 -189.59 -2.01 -17.52 16 27 C 0.07 0.95 4.74 86.32 0.41 1.36 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.06 1.30 6.13 -2.39 -0.01 1.29 16 37 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 38 H 0.09 1.70 7.99 -2.39 -0.02 1.68 16 39 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.43 10.96 8.83 -92.71 -0.82 10.14 16 41 H 0.41 13.58 8.34 -92.71 -0.77 12.81 16 42 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 43 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.08 1.09 8.02 -2.39 -0.02 1.07 16 Total: -1.00 -67.09 384.41 -2.78 -69.87 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.59 Total: 25.06 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 7.34 Total: 22.82 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -10.36 Total: -138.79 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.05 Total: -27.85 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -1.14 Total: 5.52 kcal Total: -67.09 -2.78 -69.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362458226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.603 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds