Wall clock time and date at job start Tue Mar 31 2020 22:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49905 * 2 1 4 4 C 1.53036 * 109.49711 * 239.93871 * 2 1 3 5 5 C 1.53043 * 109.52641 * 301.38776 * 4 2 1 6 6 H 1.08994 * 109.49279 * 58.58312 * 5 4 2 7 7 C 1.50696 * 109.49676 * 178.67727 * 5 4 2 8 8 O 1.20833 * 120.00285 * 359.97438 * 7 5 4 9 9 O 1.34226 * 120.00053 * 180.02562 * 7 5 4 10 10 C 1.53190 * 109.31245 * 298.61333 * 5 4 2 11 11 N 1.46926 * 108.76300 * 54.65748 * 10 5 4 12 12 C 1.34776 * 120.63251 * 126.40438 * 11 10 5 13 13 O 1.21344 * 120.00090 * 173.30432 * 12 11 10 14 14 C 1.49452 * 119.99969 * 353.31393 * 12 11 10 15 15 O 1.21350 * 119.99797 * 354.10636 * 14 12 11 16 16 N 1.34773 * 120.00136 * 174.11063 * 14 12 11 17 17 C 1.46494 * 119.99754 * 184.82735 * 16 14 12 18 18 C 1.53005 * 109.46815 * 174.94314 * 17 16 14 19 19 C 1.50696 * 115.55396 * 64.78154 * 18 17 16 20 20 H 1.08000 * 119.99551 * 276.75401 * 19 18 17 21 21 C 1.37870 * 120.00484 * 96.75324 * 19 18 17 22 22 N 1.31520 * 119.99990 * 5.55005 * 21 19 18 23 23 Si 1.86801 * 120.00268 * 185.55362 * 21 19 18 24 24 H 1.48503 * 109.47370 * 59.99478 * 23 21 19 25 25 H 1.48498 * 109.47049 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46749 * 299.99673 * 23 21 19 27 27 C 1.53004 * 117.49772 * 279.10665 * 18 17 16 28 28 C 1.53001 * 117.49735 * 210.44851 * 18 17 16 29 29 C 1.46928 * 118.73822 * 306.38016 * 11 10 5 30 30 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47070 * 300.06505 * 1 2 3 32 32 H 1.09002 * 109.47217 * 60.05872 * 1 2 3 33 33 H 1.08998 * 109.46339 * 61.40296 * 4 2 1 34 34 H 1.09001 * 109.46345 * 181.37226 * 4 2 1 35 35 H 0.96708 * 117.00475 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.60117 * 294.86727 * 10 5 4 37 37 H 1.08996 * 109.70038 * 174.50480 * 10 5 4 38 38 H 0.96997 * 119.99752 * 4.82125 * 16 14 12 39 39 H 1.08998 * 109.47400 * 294.94030 * 17 16 14 40 40 H 1.09002 * 109.47696 * 54.94335 * 17 16 14 41 41 H 0.96999 * 119.99878 * 185.00543 * 22 21 19 42 42 H 1.09002 * 117.49631 * 0.02562 * 27 18 17 43 43 H 1.09002 * 117.49875 * 145.02301 * 27 18 17 44 44 H 1.08999 * 117.50009 * 214.97835 * 28 18 17 45 45 H 1.09008 * 117.50049 * 359.97438 * 28 18 17 46 46 H 1.09004 * 109.58967 * 293.82598 * 29 11 10 47 47 H 1.08997 * 109.58611 * 173.39737 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0407 -0.7226 -1.2486 5 6 1.5033 -2.1555 -1.2661 6 1 0.4136 -2.1354 -1.2538 7 6 1.9801 -2.8563 -2.5121 8 8 2.6779 -2.2701 -3.3055 9 8 1.6287 -4.1313 -2.7411 10 6 2.0153 -2.9038 -0.0313 11 7 1.6528 -2.1383 1.1692 12 6 0.9765 -2.7226 2.1780 13 8 0.7889 -2.1178 3.2131 14 6 0.4579 -4.1155 2.0219 15 8 0.5510 -4.6813 0.9524 16 7 -0.1133 -4.7432 3.0688 17 6 -0.5256 -6.1437 2.9470 18 6 -1.0241 -6.6482 4.3028 19 6 -2.2704 -5.9821 4.8261 20 1 -2.1996 -5.0419 5.3528 21 6 -3.5011 -6.5727 4.6323 22 7 -3.5787 -7.7677 4.0887 23 14 -5.0583 -5.6756 5.1420 24 1 -5.1555 -4.3924 4.4008 25 1 -6.2401 -6.5184 4.8288 26 1 -5.0171 -5.4025 6.6012 27 6 0.0280 -7.0814 5.3257 28 6 -0.8309 -8.1328 4.6185 29 6 2.0419 -0.7237 1.2493 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.6983 -0.1954 -2.1390 34 1 3.1305 -0.7437 -1.2358 35 1 1.9591 -4.5387 -3.5536 36 1 3.0992 -3.0036 -0.0876 37 1 1.5592 -3.8927 0.0143 38 1 -0.2512 -4.2678 3.9030 39 1 -1.3269 -6.2239 2.2125 40 1 0.3239 -6.7460 2.6252 41 1 -4.4455 -8.1528 3.8856 42 1 1.0753 -7.0066 5.0329 43 1 -0.1814 -6.8849 6.3772 44 1 -1.6051 -8.6275 5.2051 45 1 -0.3491 -8.7501 3.8603 46 1 3.1281 -0.6457 1.2974 47 1 1.6014 -0.2734 2.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422706925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:00 Heat of formation + Delta-G solvation = -123.595124 kcal Electronic energy + Delta-G solvation = -30528.378730 eV Core-core repulsion = 26291.535369 eV Total energy + Delta-G solvation = -4236.843361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24310 -40.28377 -38.78925 -37.71049 -36.84317 -36.27520 -34.15434 -33.15853 -32.36693 -31.94344 -27.78366 -27.07861 -26.05407 -25.31733 -24.90089 -22.97737 -21.52754 -21.09836 -20.09566 -19.49471 -18.91595 -18.24586 -17.76740 -17.09828 -16.56241 -16.25855 -16.07888 -15.55004 -15.23890 -14.85509 -14.79245 -14.71841 -14.37777 -14.09668 -13.94341 -13.85137 -13.30723 -13.24692 -13.00323 -12.75078 -12.36860 -12.19408 -11.99339 -11.71708 -11.60635 -11.56913 -11.35695 -11.10010 -11.07175 -11.04312 -10.92998 -10.69245 -10.65967 -10.56514 -10.20798 -9.56227 -9.21026 -9.00103 -8.83329 -8.59510 -8.40341 -8.20770 -6.11666 -4.22148 1.60714 1.96620 2.45142 2.85803 3.26441 3.31853 3.34796 3.41897 3.71007 4.31058 4.33306 4.45484 4.52087 4.63069 4.69880 4.90535 5.00388 5.12448 5.17487 5.29894 5.34561 5.41045 5.46421 5.48765 5.56180 5.76273 5.79603 5.86294 5.88926 5.91223 6.07077 6.22857 6.26254 6.32232 6.33842 6.45216 6.62675 6.74459 7.01020 7.02520 7.10651 7.29276 7.57020 7.68347 7.71444 7.77204 8.01073 8.28183 8.39285 8.80170 9.45569 10.93964 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003045 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.535485 B = 9192.250083 C = 9648.694229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.101 4.101 5 C -0.095 4.095 6 H 0.117 0.883 7 C 0.491 3.509 8 O -0.520 6.520 9 O -0.504 6.504 10 C 0.058 3.942 11 N -0.583 5.583 12 C 0.512 3.488 13 O -0.515 6.515 14 C 0.496 3.504 15 O -0.524 6.524 16 N -0.660 5.660 17 C 0.157 3.843 18 C 0.012 3.988 19 C -0.500 4.500 20 H 0.060 0.940 21 C 0.075 3.925 22 N -0.875 5.875 23 Si 0.890 3.110 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.213 4.213 28 C -0.128 4.128 29 C 0.108 3.892 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.177 0.823 38 H 0.416 0.584 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.262 0.738 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.086 11.065 -10.289 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.139 4.139 5 C -0.115 4.115 6 H 0.135 0.865 7 C 0.333 3.667 8 O -0.409 6.409 9 O -0.315 6.315 10 C -0.063 4.063 11 N -0.317 5.317 12 C 0.295 3.705 13 O -0.390 6.390 14 C 0.277 3.723 15 O -0.405 6.405 16 N -0.309 5.309 17 C 0.035 3.965 18 C 0.011 3.989 19 C -0.537 4.537 20 H 0.079 0.921 21 C -0.129 4.129 22 N -0.512 5.512 23 Si 0.717 3.283 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.251 4.251 28 C -0.166 4.166 29 C -0.014 4.014 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.192 0.808 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.937 11.115 -10.264 18.669 hybrid contribution -0.700 0.517 -0.171 0.887 sum 10.237 11.632 -10.435 18.681 Atomic orbital electron populations 1.21903 0.94431 1.02528 1.02094 1.21518 0.96955 0.99668 0.94150 0.89135 1.21513 1.01367 0.92639 0.98370 1.21436 1.03942 0.95347 0.90740 0.86528 1.23263 0.76410 0.79761 0.87295 1.90708 1.35969 1.66571 1.47619 1.84641 1.71653 1.27735 1.47477 1.23253 1.01247 1.00885 0.80915 1.47803 1.54744 1.11242 1.17944 1.20358 0.78708 0.87920 0.83522 1.90754 1.56344 1.65055 1.26849 1.20002 0.80615 0.86542 0.85187 1.90236 1.58042 1.66794 1.25405 1.45952 1.55839 1.14384 1.14688 1.21324 0.97678 0.77703 0.99832 1.19056 0.94301 0.95580 0.89943 1.20330 0.89431 1.06646 1.37328 0.92147 1.24968 0.98989 0.94214 0.94763 1.70003 1.24866 1.14138 1.42153 0.86705 0.82609 0.79812 0.79188 1.20139 1.21248 1.20135 1.23100 0.94635 1.08760 0.98573 1.22481 1.00395 0.92020 1.01746 1.21826 0.99981 0.80340 0.99292 0.92217 0.92139 0.92359 0.90612 0.90733 0.73259 0.91573 0.80763 0.74766 0.90894 0.93141 0.92794 0.91876 0.90261 0.88351 0.91974 0.90930 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.70 37.16 0.32 -1.08 16 2 C -0.10 -0.85 3.21 -90.50 -0.29 -1.15 16 3 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 4 C -0.10 -0.89 4.01 -26.69 -0.11 -1.00 16 5 C -0.09 -0.98 2.44 -91.65 -0.22 -1.20 16 6 H 0.12 1.24 6.33 -51.93 -0.33 0.91 16 7 C 0.49 5.34 7.63 36.00 0.27 5.61 16 8 O -0.52 -6.71 16.74 -18.76 -0.31 -7.02 16 9 O -0.50 -4.86 13.35 -39.25 -0.52 -5.38 16 10 C 0.06 0.67 5.49 -3.71 -0.02 0.65 16 11 N -0.58 -7.18 2.41 -173.28 -0.42 -7.59 16 12 C 0.51 7.88 7.75 -11.58 -0.09 7.79 16 13 O -0.52 -8.89 15.94 5.50 0.09 -8.80 16 14 C 0.50 8.50 7.78 -11.59 -0.09 8.41 16 15 O -0.52 -9.30 13.09 5.50 0.07 -9.23 16 16 N -0.66 -12.27 5.47 -60.73 -0.33 -12.60 16 17 C 0.16 3.24 5.51 -4.04 -0.02 3.22 16 18 C 0.01 0.27 1.70 -155.66 -0.26 0.01 16 19 C -0.50 -12.62 8.64 -34.44 -0.30 -12.92 16 20 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 21 C 0.07 1.93 5.40 -17.82 -0.10 1.84 16 22 N -0.88 -23.42 11.58 55.43 0.64 -22.77 16 23 Si 0.89 20.31 29.54 -169.99 -5.02 15.28 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 28 C -0.13 -2.86 8.81 -26.69 -0.24 -3.09 16 29 C 0.11 1.06 5.81 -3.71 -0.02 1.04 16 30 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.66 8.07 -51.93 -0.42 0.25 16 34 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.41 2.09 9.10 45.56 0.41 2.51 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.18 2.43 3.76 -56.85 -0.21 2.22 16 38 H 0.42 7.77 7.80 -40.82 -0.32 7.45 16 39 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 41 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 44 H 0.10 2.41 7.33 -51.93 -0.38 2.03 16 45 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 1.06 7.05 -51.93 -0.37 0.69 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -29.56 383.33 -7.57 -37.13 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.11 Total: 11.70 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.43 Total: 3.50 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.11 Total: -42.97 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.68 Total: -30.43 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.56 -7.57 -37.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.462 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds