Wall clock time and date at job start Tue Mar 31 2020 21:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49905 * 2 1 4 4 C 1.53036 * 109.49711 * 239.93871 * 2 1 3 5 5 C 1.53043 * 109.52641 * 301.38776 * 4 2 1 6 6 H 1.08994 * 109.49279 * 58.58312 * 5 4 2 7 7 C 1.50696 * 109.49676 * 178.67727 * 5 4 2 8 8 O 1.20833 * 120.00285 * 359.97438 * 7 5 4 9 9 O 1.34226 * 120.00053 * 180.02562 * 7 5 4 10 10 C 1.53190 * 109.31245 * 298.61333 * 5 4 2 11 11 N 1.46926 * 108.76300 * 54.65748 * 10 5 4 12 12 C 1.34776 * 120.63251 * 126.40438 * 11 10 5 13 13 O 1.21344 * 120.00090 * 173.30432 * 12 11 10 14 14 C 1.49452 * 119.99969 * 353.31393 * 12 11 10 15 15 O 1.21350 * 119.99797 * 354.10636 * 14 12 11 16 16 N 1.34773 * 120.00136 * 174.11063 * 14 12 11 17 17 C 1.46494 * 119.99754 * 184.82735 * 16 14 12 18 18 C 1.53005 * 109.46815 * 174.94314 * 17 16 14 19 19 C 1.50696 * 115.55396 * 64.78154 * 18 17 16 20 20 H 1.08000 * 119.99551 * 276.75401 * 19 18 17 21 21 C 1.37870 * 120.00484 * 96.75324 * 19 18 17 22 22 N 1.31520 * 119.99990 * 5.55005 * 21 19 18 23 23 Si 1.86801 * 120.00268 * 185.55362 * 21 19 18 24 24 H 1.48503 * 109.47370 * 59.99478 * 23 21 19 25 25 H 1.48498 * 109.47049 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46749 * 299.99673 * 23 21 19 27 27 C 1.53004 * 117.49772 * 279.10665 * 18 17 16 28 28 C 1.53001 * 117.49735 * 210.44851 * 18 17 16 29 29 C 1.46928 * 118.73822 * 306.38016 * 11 10 5 30 30 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47070 * 300.06505 * 1 2 3 32 32 H 1.09002 * 109.47217 * 60.05872 * 1 2 3 33 33 H 1.08998 * 109.46339 * 61.40296 * 4 2 1 34 34 H 1.09001 * 109.46345 * 181.37226 * 4 2 1 35 35 H 0.96708 * 117.00475 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.60117 * 294.86727 * 10 5 4 37 37 H 1.08996 * 109.70038 * 174.50480 * 10 5 4 38 38 H 0.96997 * 119.99752 * 4.82125 * 16 14 12 39 39 H 1.08998 * 109.47400 * 294.94030 * 17 16 14 40 40 H 1.09002 * 109.47696 * 54.94335 * 17 16 14 41 41 H 0.96999 * 119.99878 * 185.00543 * 22 21 19 42 42 H 1.09002 * 117.49631 * 0.02562 * 27 18 17 43 43 H 1.09002 * 117.49875 * 145.02301 * 27 18 17 44 44 H 1.08999 * 117.50009 * 214.97835 * 28 18 17 45 45 H 1.09008 * 117.50049 * 359.97438 * 28 18 17 46 46 H 1.09004 * 109.58967 * 293.82598 * 29 11 10 47 47 H 1.08997 * 109.58611 * 173.39737 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0407 -0.7226 -1.2486 5 6 1.5033 -2.1555 -1.2661 6 1 0.4136 -2.1354 -1.2538 7 6 1.9801 -2.8563 -2.5121 8 8 2.6779 -2.2701 -3.3055 9 8 1.6287 -4.1313 -2.7411 10 6 2.0153 -2.9038 -0.0313 11 7 1.6528 -2.1383 1.1692 12 6 0.9765 -2.7226 2.1780 13 8 0.7889 -2.1178 3.2131 14 6 0.4579 -4.1155 2.0219 15 8 0.5510 -4.6813 0.9524 16 7 -0.1133 -4.7432 3.0688 17 6 -0.5256 -6.1437 2.9470 18 6 -1.0241 -6.6482 4.3028 19 6 -2.2704 -5.9821 4.8261 20 1 -2.1996 -5.0419 5.3528 21 6 -3.5011 -6.5727 4.6323 22 7 -3.5787 -7.7677 4.0887 23 14 -5.0583 -5.6756 5.1420 24 1 -5.1555 -4.3924 4.4008 25 1 -6.2401 -6.5184 4.8288 26 1 -5.0171 -5.4025 6.6012 27 6 0.0280 -7.0814 5.3257 28 6 -0.8309 -8.1328 4.6185 29 6 2.0419 -0.7237 1.2493 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.6983 -0.1954 -2.1390 34 1 3.1305 -0.7437 -1.2358 35 1 1.9591 -4.5387 -3.5536 36 1 3.0992 -3.0036 -0.0876 37 1 1.5592 -3.8927 0.0143 38 1 -0.2512 -4.2678 3.9030 39 1 -1.3269 -6.2239 2.2125 40 1 0.3239 -6.7460 2.6252 41 1 -4.4455 -8.1528 3.8856 42 1 1.0753 -7.0066 5.0329 43 1 -0.1814 -6.8849 6.3772 44 1 -1.6051 -8.6275 5.2051 45 1 -0.3491 -8.7501 3.8603 46 1 3.1281 -0.6457 1.2974 47 1 1.6014 -0.2734 2.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422706925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:59 Heat of formation + Delta-G solvation = -142.708865 kcal Electronic energy + Delta-G solvation = -30529.207564 eV Core-core repulsion = 26291.535369 eV Total energy + Delta-G solvation = -4237.672195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29209 -41.30563 -39.99342 -38.80007 -38.51172 -37.12668 -35.44493 -34.34707 -33.87119 -33.21140 -29.05879 -28.13421 -27.48633 -26.79775 -25.80668 -24.15034 -22.87280 -22.34964 -21.50807 -20.99902 -19.83296 -19.12901 -18.96315 -18.19668 -18.00325 -17.44278 -17.27774 -16.83174 -16.66111 -16.43232 -15.90761 -15.83112 -15.62067 -15.29346 -14.94321 -14.71499 -14.65938 -14.46089 -14.25458 -13.95647 -13.69810 -13.43967 -13.22368 -13.09340 -12.95916 -12.77912 -12.54967 -12.39149 -12.35441 -12.19460 -11.98851 -11.95492 -11.83068 -11.63867 -11.53745 -11.33332 -11.03235 -10.38591 -10.32444 -10.02569 -9.94254 -9.82545 -8.08839 -6.22880 0.32500 1.08076 1.32393 1.43559 1.45512 1.51495 2.06565 2.12285 2.42966 2.52986 3.16562 3.27880 3.53539 3.61625 3.68538 3.79840 3.86843 4.09845 4.21905 4.25084 4.44388 4.49641 4.55482 4.61775 4.63566 4.66933 4.68841 4.75992 4.77257 4.89925 4.98681 5.04672 5.06539 5.07862 5.16493 5.24321 5.34736 5.37858 5.57021 5.59058 5.60562 5.75129 5.82594 5.93140 6.30917 6.37985 6.72235 6.83852 6.98942 6.99434 7.46309 8.95876 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003045 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.535485 B = 9192.250083 C = 9648.694229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 H 0.119 0.881 4 C -0.095 4.095 5 C -0.093 4.093 6 H 0.112 0.888 7 C 0.497 3.503 8 O -0.540 6.540 9 O -0.510 6.510 10 C 0.060 3.940 11 N -0.571 5.571 12 C 0.515 3.485 13 O -0.538 6.538 14 C 0.496 3.504 15 O -0.531 6.531 16 N -0.666 5.666 17 C 0.173 3.827 18 C -0.008 4.008 19 C -0.509 4.509 20 H 0.056 0.944 21 C 0.031 3.969 22 N -0.901 5.901 23 Si 0.943 3.057 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.272 1.272 27 C -0.187 4.187 28 C -0.136 4.136 29 C 0.102 3.898 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.427 0.573 36 H 0.083 0.917 37 H 0.155 0.845 38 H 0.415 0.585 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.260 0.740 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.524 12.762 -10.970 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 H 0.137 0.863 4 C -0.133 4.133 5 C -0.113 4.113 6 H 0.129 0.871 7 C 0.340 3.660 8 O -0.431 6.431 9 O -0.323 6.323 10 C -0.061 4.061 11 N -0.304 5.304 12 C 0.297 3.703 13 O -0.415 6.415 14 C 0.278 3.722 15 O -0.412 6.412 16 N -0.315 5.315 17 C 0.050 3.950 18 C -0.009 4.009 19 C -0.546 4.546 20 H 0.074 0.926 21 C -0.171 4.171 22 N -0.538 5.538 23 Si 0.769 3.231 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.224 4.224 28 C -0.174 4.174 29 C -0.018 4.018 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.114 0.886 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.398 12.820 -10.985 20.946 hybrid contribution -1.100 -0.021 -0.036 1.100 sum 11.299 12.799 -11.021 20.321 Atomic orbital electron populations 1.21907 0.95306 1.01214 1.02587 1.21515 0.96078 1.00839 0.92881 0.86271 1.21497 1.01640 0.91418 0.98746 1.21424 1.03696 0.96261 0.89895 0.87051 1.23264 0.75815 0.79879 0.87079 1.90702 1.36957 1.67065 1.48344 1.84612 1.71584 1.27323 1.48810 1.23122 1.02023 0.99908 0.81080 1.47859 1.53045 1.12318 1.17130 1.19953 0.79287 0.86990 0.84068 1.90747 1.57738 1.65218 1.27825 1.20377 0.79945 0.87334 0.84564 1.90284 1.57972 1.67418 1.25522 1.45857 1.56709 1.13714 1.15254 1.20924 0.97052 0.79156 0.97868 1.19112 0.94623 0.95713 0.91427 1.20619 0.90703 1.06473 1.36846 0.92585 1.25588 1.01446 0.94866 0.95154 1.70107 1.25089 1.15150 1.43492 0.85861 0.79722 0.78662 0.78850 1.20130 1.21256 1.19763 1.23062 0.95382 1.06136 0.97848 1.22368 1.00556 0.92104 1.02339 1.22106 1.01389 0.78461 0.99887 0.94406 0.92522 0.91046 0.90145 0.90114 0.71099 0.89869 0.82877 0.74881 0.93768 0.92038 0.93095 0.89269 0.90514 0.91082 0.90675 0.88615 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.70 71.98 0.63 -1.91 16 2 C -0.09 -1.28 3.21 -10.72 -0.03 -1.32 16 3 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 4 C -0.10 -1.42 4.01 30.62 0.12 -1.30 16 5 C -0.09 -1.76 2.44 -11.46 -0.03 -1.78 16 6 H 0.11 2.25 6.33 -2.39 -0.02 2.24 16 7 C 0.50 10.01 7.63 71.23 0.54 10.56 16 8 O -0.54 -12.96 16.74 21.94 0.37 -12.60 16 9 O -0.51 -9.14 13.35 -51.38 -0.69 -9.83 16 10 C 0.06 1.29 5.49 86.36 0.47 1.76 16 11 N -0.57 -13.17 2.41 -820.49 -1.98 -15.15 16 12 C 0.51 15.50 7.75 87.27 0.68 16.17 16 13 O -0.54 -18.29 15.94 -3.23 -0.05 -18.34 16 14 C 0.50 16.91 7.78 87.27 0.68 17.59 16 15 O -0.53 -18.77 13.09 -3.25 -0.04 -18.82 16 16 N -0.67 -24.79 5.47 -464.42 -2.54 -27.33 16 17 C 0.17 7.19 5.51 86.38 0.48 7.67 16 18 C -0.01 -0.36 1.70 -52.93 -0.09 -0.45 16 19 C -0.51 -25.94 8.64 25.60 0.22 -25.72 16 20 H 0.06 2.84 7.82 -2.91 -0.02 2.81 16 21 C 0.03 1.60 5.40 84.65 0.46 2.06 16 22 N -0.90 -49.12 11.58 21.45 0.25 -48.88 16 23 Si 0.94 42.10 29.54 68.60 2.03 44.13 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C -0.19 -7.46 9.96 30.62 0.30 -7.15 16 28 C -0.14 -6.04 8.81 30.62 0.27 -5.77 16 29 C 0.10 1.76 5.81 86.36 0.50 2.27 16 30 H 0.04 0.79 5.97 -2.39 -0.01 0.78 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 34 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 35 H 0.43 3.74 9.10 -74.05 -0.67 3.07 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.16 4.14 3.76 -80.33 -0.30 3.83 16 38 H 0.41 15.56 7.80 -92.71 -0.72 14.84 16 39 H 0.04 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.38 8.09 -2.39 -0.02 2.37 16 41 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 42 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.07 3.56 7.33 -2.39 -0.02 3.54 16 45 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 46 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.09 1.77 7.05 -2.39 -0.02 1.75 16 Total: -1.00 -63.30 383.33 1.87 -61.42 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.67 Total: 32.74 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.20 Total: 12.66 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.27 Total: -91.36 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -0.41 Total: -59.59 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -63.30 1.87 -61.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.288 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds