Wall clock time and date at job start Tue Mar 31 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.49639 * 2 1 4 4 C 1.53034 * 109.49961 * 239.93494 * 2 1 3 5 5 C 1.53043 * 109.53898 * 178.71641 * 4 2 1 6 6 H 1.09002 * 109.49543 * 301.34550 * 5 4 2 7 7 C 1.50705 * 109.49887 * 181.28365 * 5 4 2 8 8 O 1.20826 * 119.99486 * 0.06526 * 7 5 4 9 9 O 1.34221 * 120.00004 * 179.78545 * 7 5 4 10 10 C 1.53190 * 109.33971 * 61.31368 * 5 4 2 11 11 N 1.46920 * 108.77770 * 305.38277 * 10 5 4 12 12 C 1.34780 * 120.63140 * 233.58831 * 11 10 5 13 13 O 1.21346 * 119.99958 * 174.93377 * 12 11 10 14 14 C 1.49449 * 119.99716 * 354.93744 * 12 11 10 15 15 O 1.21349 * 119.99996 * 275.28930 * 14 12 11 16 16 N 1.34778 * 119.99947 * 95.29689 * 14 12 11 17 17 C 1.46502 * 120.00002 * 185.01910 * 16 14 12 18 18 C 1.52991 * 109.47369 * 175.02101 * 17 16 14 19 19 C 1.50700 * 115.55547 * 279.46264 * 18 17 16 20 20 H 1.08001 * 120.00079 * 95.16596 * 19 18 17 21 21 C 1.37876 * 119.99968 * 275.17564 * 19 18 17 22 22 N 1.31517 * 119.99767 * 5.13058 * 21 19 18 23 23 Si 1.86797 * 120.00042 * 185.13893 * 21 19 18 24 24 H 1.48504 * 109.47237 * 59.99709 * 23 21 19 25 25 H 1.48498 * 109.47301 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47200 * 299.99810 * 23 21 19 27 27 C 1.53007 * 117.49842 * 133.75099 * 18 17 16 28 28 C 1.52996 * 60.00033 * 252.51339 * 27 18 17 29 29 C 1.46928 * 118.73929 * 53.60724 * 11 10 5 30 30 H 1.08992 * 109.47198 * 299.93857 * 1 2 3 31 31 H 1.09008 * 109.47085 * 59.93787 * 1 2 3 32 32 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.48842 * 58.67690 * 4 2 1 34 34 H 1.08998 * 109.43492 * 298.71677 * 4 2 1 35 35 H 0.96704 * 116.99737 * 180.26957 * 9 7 5 36 36 H 1.08997 * 109.58288 * 65.16990 * 10 5 4 37 37 H 1.09002 * 109.58443 * 185.59530 * 10 5 4 38 38 H 0.96994 * 120.00346 * 5.01055 * 16 14 12 39 39 H 1.08999 * 109.47254 * 295.02888 * 17 16 14 40 40 H 1.09008 * 109.46808 * 55.02113 * 17 16 14 41 41 H 0.97009 * 119.99229 * 185.00245 * 22 21 19 42 42 H 1.08997 * 117.49653 * 0.02562 * 27 18 17 43 43 H 1.09004 * 117.49521 * 145.02191 * 27 18 17 44 44 H 1.09006 * 117.50190 * 252.51047 * 28 27 18 45 45 H 1.09004 * 117.50236 * 107.48934 * 28 27 18 46 46 H 1.08993 * 109.58734 * 66.18131 * 29 11 10 47 47 H 1.08995 * 109.58537 * 186.60727 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5709 -0.6953 -1.2657 6 1 3.9164 0.3384 -1.2544 7 6 4.0723 -1.3796 -2.5113 8 8 3.2867 -1.8410 -3.3049 9 8 5.3914 -1.4716 -2.7418 10 6 4.1053 -1.4266 -0.0302 11 7 3.5046 -0.8287 1.1699 12 6 4.2811 -0.3856 2.1785 13 8 3.7800 0.1889 3.1226 14 6 5.7592 -0.6018 2.1340 15 8 6.2312 -1.6494 2.5242 16 7 6.5680 0.3669 1.6607 17 6 8.0038 0.1156 1.5141 18 6 8.6672 1.3219 0.8467 19 6 8.5322 1.3911 -0.6526 20 1 7.7386 1.9734 -1.0971 21 6 9.4218 0.7109 -1.4570 22 7 10.3250 -0.0784 -0.9177 23 14 9.3443 0.9106 -3.3126 24 1 9.5589 2.3368 -3.6664 25 1 10.4007 0.0800 -3.9445 26 1 8.0119 0.4742 -3.8022 27 6 9.9651 1.8460 1.4646 28 6 8.6685 2.6436 1.6176 29 6 2.0413 -0.7234 1.2498 30 1 -0.3633 0.5128 0.8905 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6587 -0.2241 -2.1392 34 1 1.6963 -1.7567 -1.2354 35 1 5.6648 -1.9158 -3.5561 36 1 3.8376 -2.4817 -0.0859 37 1 5.1896 -1.3244 0.0143 38 1 6.1994 1.2304 1.4171 39 1 8.4468 -0.0451 2.4969 40 1 8.1565 -0.7703 0.8975 41 1 10.9964 -0.5000 -1.4767 42 1 10.3466 1.3310 2.3462 43 1 10.7218 2.2407 0.7865 44 1 8.5721 3.5631 1.0402 45 1 8.1967 2.6536 2.6002 46 1 1.6053 -1.7211 1.2986 47 1 1.7637 -0.1572 2.1389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422706926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:02 Heat of formation + Delta-G solvation = -144.551570 kcal Electronic energy + Delta-G solvation = -31090.998005 eV Core-core repulsion = 26853.245903 eV Total energy + Delta-G solvation = -4237.752101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07944 -40.18811 -38.73062 -37.58189 -36.75428 -36.13985 -34.11184 -33.56875 -32.57606 -32.01745 -27.92333 -26.87602 -26.05661 -25.26999 -24.77074 -22.80574 -21.29089 -21.08013 -20.32800 -19.63015 -19.13608 -18.08279 -17.96880 -16.96719 -16.48031 -16.27177 -15.94098 -15.82201 -15.25585 -14.77685 -14.67244 -14.56386 -14.41397 -14.31419 -13.81549 -13.43597 -13.39973 -13.18988 -12.94744 -12.76493 -12.37949 -12.29660 -11.90056 -11.67021 -11.60366 -11.51736 -11.38247 -11.16818 -11.09743 -11.04955 -10.96240 -10.94703 -10.61776 -10.60064 -10.34202 -9.75136 -9.34154 -9.09476 -8.98674 -8.56457 -8.44218 -8.29716 -6.13878 -4.22435 1.99928 2.24872 2.30195 2.85051 2.96096 3.22566 3.28965 3.30588 3.62796 4.24331 4.31298 4.40977 4.50722 4.52900 4.74536 4.84742 5.05658 5.14295 5.15262 5.22822 5.25157 5.29507 5.38154 5.43595 5.52526 5.58342 5.69936 5.82765 5.83885 5.91531 6.02669 6.17056 6.25026 6.33964 6.44032 6.46267 6.59789 6.67036 6.94339 6.97905 7.01216 7.32952 7.39611 7.75253 7.76256 7.83645 7.84782 8.26478 8.35730 8.78776 9.45262 10.94471 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.004775 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.565132 B = 5862.234569 C = 7749.282080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.100 4.100 5 C -0.096 4.096 6 H 0.121 0.879 7 C 0.489 3.511 8 O -0.518 6.518 9 O -0.498 6.498 10 C 0.117 3.883 11 N -0.597 5.597 12 C 0.521 3.479 13 O -0.516 6.516 14 C 0.505 3.495 15 O -0.523 6.523 16 N -0.685 5.685 17 C 0.160 3.840 18 C 0.027 3.973 19 C -0.497 4.497 20 H 0.059 0.941 21 C 0.076 3.924 22 N -0.874 5.874 23 Si 0.888 3.112 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.273 1.273 27 C -0.145 4.145 28 C -0.211 4.211 29 C 0.111 3.889 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.403 0.597 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 -0.738 -1.141 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.137 4.137 5 C -0.116 4.116 6 H 0.138 0.862 7 C 0.330 3.670 8 O -0.407 6.407 9 O -0.309 6.309 10 C -0.006 4.006 11 N -0.332 5.332 12 C 0.304 3.696 13 O -0.390 6.390 14 C 0.285 3.715 15 O -0.399 6.399 16 N -0.335 5.335 17 C 0.038 3.962 18 C 0.026 3.974 19 C -0.535 4.535 20 H 0.077 0.923 21 C -0.128 4.128 22 N -0.510 5.510 23 Si 0.715 3.285 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.198 1.198 27 C -0.183 4.183 28 C -0.249 4.249 29 C -0.011 4.011 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.271 0.729 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.237 0.763 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.293 -1.311 -0.242 15.351 hybrid contribution 0.260 0.174 -1.807 1.834 sum -15.033 -1.137 -2.050 15.215 Atomic orbital electron populations 1.21730 0.93602 1.02349 1.02387 1.21524 0.96562 1.00434 0.93998 0.89993 1.21541 0.91198 1.02432 0.98556 1.21419 0.97722 1.02197 0.90300 0.86160 1.23106 0.80402 0.76192 0.87274 1.90705 1.57103 1.45396 1.47530 1.84671 1.25260 1.73506 1.47450 1.21688 0.99969 0.96980 0.82006 1.48019 1.07018 1.60674 1.17440 1.20708 0.88418 0.77925 0.82585 1.90762 1.74538 1.40308 1.33352 1.19918 0.86613 0.85291 0.79721 1.90801 1.75290 1.26576 1.47255 1.46181 1.10079 1.15340 1.61943 1.21321 0.75907 1.00633 0.98385 1.19049 0.96671 0.88022 0.93690 1.20292 1.14775 1.30396 0.87993 0.92253 1.24937 0.95585 0.93931 0.98342 1.69996 1.16442 1.28715 1.35822 0.86734 0.77876 0.78048 0.85796 1.20469 1.21391 1.19849 1.22511 0.91450 1.03408 1.00907 1.23014 1.04196 0.97423 1.00233 1.21838 0.78336 1.01443 0.99472 0.92051 0.91988 0.92256 0.90208 0.90518 0.72882 0.90043 0.87537 0.76283 0.93832 0.89943 0.92797 0.91590 0.89712 0.90165 0.91497 0.90782 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.11 -0.87 2.87 -90.50 -0.26 -1.13 16 3 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 4 C -0.10 -0.91 3.75 -26.69 -0.10 -1.01 16 5 C -0.10 -1.06 2.78 -91.65 -0.25 -1.31 16 6 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 7 C 0.49 6.16 7.63 36.01 0.27 6.43 16 8 O -0.52 -7.45 16.74 -18.75 -0.31 -7.76 16 9 O -0.50 -6.46 13.36 -39.23 -0.52 -6.98 16 10 C 0.12 1.42 5.54 -3.72 -0.02 1.40 16 11 N -0.60 -7.57 2.97 -173.29 -0.52 -8.09 16 12 C 0.52 8.39 7.54 -11.58 -0.09 8.30 16 13 O -0.52 -9.28 16.51 5.50 0.09 -9.19 16 14 C 0.51 9.27 5.62 -11.58 -0.07 9.21 16 15 O -0.52 -11.20 17.11 5.50 0.09 -11.10 16 16 N -0.69 -12.39 5.51 -60.73 -0.33 -12.72 16 17 C 0.16 3.37 5.57 -4.05 -0.02 3.35 16 18 C 0.03 0.58 1.36 -155.66 -0.21 0.37 16 19 C -0.50 -11.99 8.82 -34.44 -0.30 -12.30 16 20 H 0.06 1.42 7.82 -52.49 -0.41 1.00 16 21 C 0.08 1.90 5.40 -17.82 -0.10 1.81 16 22 N -0.87 -22.92 12.90 55.43 0.72 -22.21 16 23 Si 0.89 19.40 29.54 -169.99 -5.02 14.37 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 C -0.14 -3.12 9.37 -26.73 -0.25 -3.37 16 28 C -0.21 -4.12 9.83 -26.73 -0.26 -4.39 16 29 C 0.11 1.10 5.73 -3.71 -0.02 1.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.41 3.77 9.10 45.56 0.41 4.19 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.55 6.37 -51.93 -0.33 1.21 16 38 H 0.40 6.63 8.40 -40.82 -0.34 6.29 16 39 H 0.04 0.93 7.94 -51.93 -0.41 0.52 16 40 H 0.08 1.97 8.12 -51.92 -0.42 1.55 16 41 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 42 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 43 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 44 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.06 7.00 -51.93 -0.36 0.70 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -30.82 395.71 -7.68 -38.50 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.49 Total: 11.37 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -1.34 Total: 7.85 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.13 Total: -43.02 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.65 Total: -35.04 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.82 -7.68 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.052 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds