Wall clock time and date at job start Tue Mar 31 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.49639 * 2 1 4 4 C 1.53034 * 109.49961 * 239.93494 * 2 1 3 5 5 C 1.53043 * 109.53898 * 178.71641 * 4 2 1 6 6 H 1.09002 * 109.49543 * 301.34550 * 5 4 2 7 7 C 1.50705 * 109.49887 * 181.28365 * 5 4 2 8 8 O 1.20826 * 119.99486 * 0.06526 * 7 5 4 9 9 O 1.34221 * 120.00004 * 179.78545 * 7 5 4 10 10 C 1.53190 * 109.33971 * 61.31368 * 5 4 2 11 11 N 1.46920 * 108.77770 * 305.38277 * 10 5 4 12 12 C 1.34780 * 120.63140 * 233.58831 * 11 10 5 13 13 O 1.21346 * 119.99958 * 174.93377 * 12 11 10 14 14 C 1.49449 * 119.99716 * 354.93744 * 12 11 10 15 15 O 1.21349 * 119.99996 * 275.28930 * 14 12 11 16 16 N 1.34778 * 119.99947 * 95.29689 * 14 12 11 17 17 C 1.46502 * 120.00002 * 185.01910 * 16 14 12 18 18 C 1.52991 * 109.47369 * 175.02101 * 17 16 14 19 19 C 1.50700 * 115.55547 * 279.46264 * 18 17 16 20 20 H 1.08001 * 120.00079 * 95.16596 * 19 18 17 21 21 C 1.37876 * 119.99968 * 275.17564 * 19 18 17 22 22 N 1.31517 * 119.99767 * 5.13058 * 21 19 18 23 23 Si 1.86797 * 120.00042 * 185.13893 * 21 19 18 24 24 H 1.48504 * 109.47237 * 59.99709 * 23 21 19 25 25 H 1.48498 * 109.47301 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47200 * 299.99810 * 23 21 19 27 27 C 1.53007 * 117.49842 * 133.75099 * 18 17 16 28 28 C 1.52996 * 60.00033 * 252.51339 * 27 18 17 29 29 C 1.46928 * 118.73929 * 53.60724 * 11 10 5 30 30 H 1.08992 * 109.47198 * 299.93857 * 1 2 3 31 31 H 1.09008 * 109.47085 * 59.93787 * 1 2 3 32 32 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.48842 * 58.67690 * 4 2 1 34 34 H 1.08998 * 109.43492 * 298.71677 * 4 2 1 35 35 H 0.96704 * 116.99737 * 180.26957 * 9 7 5 36 36 H 1.08997 * 109.58288 * 65.16990 * 10 5 4 37 37 H 1.09002 * 109.58443 * 185.59530 * 10 5 4 38 38 H 0.96994 * 120.00346 * 5.01055 * 16 14 12 39 39 H 1.08999 * 109.47254 * 295.02888 * 17 16 14 40 40 H 1.09008 * 109.46808 * 55.02113 * 17 16 14 41 41 H 0.97009 * 119.99229 * 185.00245 * 22 21 19 42 42 H 1.08997 * 117.49653 * 0.02562 * 27 18 17 43 43 H 1.09004 * 117.49521 * 145.02191 * 27 18 17 44 44 H 1.09006 * 117.50190 * 252.51047 * 28 27 18 45 45 H 1.09004 * 117.50236 * 107.48934 * 28 27 18 46 46 H 1.08993 * 109.58734 * 66.18131 * 29 11 10 47 47 H 1.08995 * 109.58537 * 186.60727 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5709 -0.6953 -1.2657 6 1 3.9164 0.3384 -1.2544 7 6 4.0723 -1.3796 -2.5113 8 8 3.2867 -1.8410 -3.3049 9 8 5.3914 -1.4716 -2.7418 10 6 4.1053 -1.4266 -0.0302 11 7 3.5046 -0.8287 1.1699 12 6 4.2811 -0.3856 2.1785 13 8 3.7800 0.1889 3.1226 14 6 5.7592 -0.6018 2.1340 15 8 6.2312 -1.6494 2.5242 16 7 6.5680 0.3669 1.6607 17 6 8.0038 0.1156 1.5141 18 6 8.6672 1.3219 0.8467 19 6 8.5322 1.3911 -0.6526 20 1 7.7386 1.9734 -1.0971 21 6 9.4218 0.7109 -1.4570 22 7 10.3250 -0.0784 -0.9177 23 14 9.3443 0.9106 -3.3126 24 1 9.5589 2.3368 -3.6664 25 1 10.4007 0.0800 -3.9445 26 1 8.0119 0.4742 -3.8022 27 6 9.9651 1.8460 1.4646 28 6 8.6685 2.6436 1.6176 29 6 2.0413 -0.7234 1.2498 30 1 -0.3633 0.5128 0.8905 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6587 -0.2241 -2.1392 34 1 1.6963 -1.7567 -1.2354 35 1 5.6648 -1.9158 -3.5561 36 1 3.8376 -2.4817 -0.0859 37 1 5.1896 -1.3244 0.0143 38 1 6.1994 1.2304 1.4171 39 1 8.4468 -0.0451 2.4969 40 1 8.1565 -0.7703 0.8975 41 1 10.9964 -0.5000 -1.4767 42 1 10.3466 1.3310 2.3462 43 1 10.7218 2.2407 0.7865 44 1 8.5721 3.5631 1.0402 45 1 8.1967 2.6536 2.6002 46 1 1.6053 -1.7211 1.2986 47 1 1.7637 -0.1572 2.1389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422706926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:02 Heat of formation + Delta-G solvation = -165.153367 kcal Electronic energy + Delta-G solvation = -31091.891366 eV Core-core repulsion = 26853.245903 eV Total energy + Delta-G solvation = -4238.645462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21956 -41.36312 -40.05146 -38.76576 -38.40552 -37.18282 -35.20586 -34.98772 -33.90117 -33.49844 -29.21327 -27.93599 -27.44187 -26.78145 -25.76658 -24.09120 -22.93185 -21.98540 -21.40077 -21.16172 -20.50836 -19.26675 -19.09722 -18.17997 -17.98165 -17.53106 -17.29715 -16.90184 -16.59512 -16.30722 -16.02573 -15.83863 -15.63180 -15.27306 -15.22249 -14.96735 -14.48902 -14.31234 -14.24667 -13.74024 -13.65999 -13.37462 -13.08490 -13.02936 -12.92968 -12.75245 -12.71829 -12.57849 -12.39597 -12.37267 -12.02720 -11.96555 -11.92116 -11.70669 -11.53963 -11.48741 -10.87870 -10.79607 -10.41156 -10.10778 -10.04355 -9.99568 -8.04791 -6.17200 0.85613 0.96047 1.11354 1.48500 1.49993 1.50500 1.56211 1.97436 2.37694 2.49080 3.24238 3.25485 3.36631 3.54527 3.57749 3.77615 3.80162 3.97392 4.22647 4.24597 4.32126 4.36248 4.52654 4.55573 4.62169 4.63101 4.66158 4.71760 4.78955 4.87625 4.92749 5.02361 5.05572 5.13252 5.16339 5.28710 5.30158 5.34428 5.47682 5.54316 5.61085 5.66210 5.80514 5.82476 6.32341 6.40541 6.53600 6.85553 6.90863 6.92005 7.52997 9.03067 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.004775 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.565132 B = 5862.234569 C = 7749.282080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.080 0.920 4 C -0.094 4.094 5 C -0.092 4.092 6 H 0.123 0.877 7 C 0.493 3.507 8 O -0.536 6.536 9 O -0.513 6.513 10 C 0.117 3.883 11 N -0.583 5.583 12 C 0.527 3.473 13 O -0.536 6.536 14 C 0.507 3.493 15 O -0.558 6.558 16 N -0.676 5.676 17 C 0.177 3.823 18 C 0.006 3.994 19 C -0.500 4.500 20 H 0.061 0.939 21 C 0.033 3.967 22 N -0.905 5.905 23 Si 0.941 3.059 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.260 1.260 27 C -0.156 4.156 28 C -0.180 4.180 29 C 0.106 3.894 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.425 0.575 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.258 0.742 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.534 0.064 -1.687 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.098 0.902 4 C -0.131 4.131 5 C -0.111 4.111 6 H 0.141 0.859 7 C 0.335 3.665 8 O -0.426 6.426 9 O -0.326 6.326 10 C -0.006 4.006 11 N -0.316 5.316 12 C 0.309 3.691 13 O -0.412 6.412 14 C 0.287 3.713 15 O -0.436 6.436 16 N -0.326 5.326 17 C 0.054 3.946 18 C 0.006 3.994 19 C -0.537 4.537 20 H 0.079 0.921 21 C -0.168 4.168 22 N -0.543 5.543 23 Si 0.767 3.233 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.184 1.184 27 C -0.194 4.194 28 C -0.217 4.217 29 C -0.014 4.014 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.287 0.713 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.666 -0.491 -0.828 17.693 hybrid contribution 0.992 -0.097 -1.654 1.931 sum -16.674 -0.588 -2.482 16.868 Atomic orbital electron populations 1.21710 0.91787 1.03119 1.03052 1.21468 0.97867 0.99804 0.92431 0.90202 1.21540 0.89468 1.02916 0.99182 1.21447 0.99084 1.01822 0.88783 0.85883 1.23318 0.80043 0.75681 0.87409 1.90697 1.57382 1.46214 1.48289 1.84661 1.25647 1.73746 1.48558 1.21686 0.98580 0.98008 0.82317 1.48030 1.08117 1.59066 1.16409 1.20137 0.87221 0.78476 0.83236 1.90759 1.74379 1.41763 1.34316 1.20363 0.87858 0.84496 0.78555 1.90776 1.76296 1.27875 1.48665 1.45994 1.08989 1.15884 1.61770 1.20870 0.77547 0.99026 0.97203 1.19063 0.97474 0.89665 0.93248 1.20571 1.14351 1.29548 0.89247 0.92061 1.25572 0.95537 0.93867 1.01865 1.70115 1.17284 1.29963 1.36894 0.85881 0.78134 0.77638 0.81614 1.20455 1.22058 1.18447 1.22451 0.91573 1.04531 1.00824 1.23003 1.01770 0.96203 1.00703 1.22143 0.76087 1.02881 1.00308 0.91480 0.91280 0.91468 0.89710 0.90124 0.71314 0.88665 0.90059 0.75107 0.94326 0.93292 0.93282 0.91059 0.91668 0.89439 0.89340 0.88817 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.20 71.98 0.66 -0.69 16 2 C -0.10 -1.32 2.87 -10.72 -0.03 -1.35 16 3 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 4 C -0.09 -1.46 3.75 30.62 0.11 -1.35 16 5 C -0.09 -1.85 2.78 -11.46 -0.03 -1.88 16 6 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 7 C 0.49 11.78 7.63 71.24 0.54 12.32 16 8 O -0.54 -14.56 16.74 21.96 0.37 -14.20 16 9 O -0.51 -12.89 13.36 -51.33 -0.69 -13.58 16 10 C 0.12 2.72 5.54 86.36 0.48 3.20 16 11 N -0.58 -13.93 2.97 -820.51 -2.44 -16.37 16 12 C 0.53 16.53 7.54 87.27 0.66 17.19 16 13 O -0.54 -18.72 16.51 -3.23 -0.05 -18.77 16 14 C 0.51 18.62 5.62 87.27 0.49 19.11 16 15 O -0.56 -24.29 17.11 -3.24 -0.06 -24.35 16 16 N -0.68 -24.32 5.51 -464.41 -2.56 -26.88 16 17 C 0.18 7.57 5.57 86.38 0.48 8.05 16 18 C 0.01 0.28 1.36 -52.93 -0.07 0.20 16 19 C -0.50 -23.97 8.82 25.60 0.23 -23.74 16 20 H 0.06 2.86 7.82 -2.91 -0.02 2.83 16 21 C 0.03 1.63 5.40 84.65 0.46 2.09 16 22 N -0.91 -48.44 12.90 21.45 0.28 -48.16 16 23 Si 0.94 39.67 29.54 68.60 2.03 41.70 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 27 C -0.16 -6.71 9.37 30.60 0.29 -6.42 16 28 C -0.18 -6.71 9.83 30.59 0.30 -6.41 16 29 C 0.11 1.85 5.73 86.36 0.49 2.35 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.08 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.43 7.45 9.10 -74.05 -0.67 6.77 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.36 6.37 -2.39 -0.02 2.34 16 38 H 0.41 13.18 8.40 -92.71 -0.78 12.41 16 39 H 0.04 1.68 7.94 -2.39 -0.02 1.66 16 40 H 0.05 2.42 8.12 -2.38 -0.02 2.40 16 41 H 0.26 13.46 8.32 -92.70 -0.77 12.69 16 42 H 0.07 2.95 8.08 -2.39 -0.02 2.93 16 43 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 45 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.82 7.00 -2.39 -0.02 1.81 16 Total: -1.00 -65.92 395.71 1.49 -64.43 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.45 Total: 33.52 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 5.06 Total: 22.66 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -4.72 Total: -91.42 kcal Atomic # 8 Polarization: -70.46 SS G_CDS: -0.43 Total: -70.89 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -65.92 1.49 -64.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.720 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds