Wall clock time and date at job start Tue Mar 31 2020 22:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50063 * 2 1 4 4 C 1.53045 * 109.49872 * 120.09553 * 2 1 3 5 5 C 1.53041 * 109.53826 * 58.58400 * 4 2 1 6 6 H 1.09005 * 109.49783 * 301.41375 * 5 4 2 7 7 C 1.50700 * 109.52662 * 181.33322 * 5 4 2 8 8 O 1.20823 * 119.99702 * 0.08131 * 7 5 4 9 9 O 1.34227 * 119.99795 * 180.02562 * 7 5 4 10 10 C 1.53190 * 109.31303 * 61.36461 * 5 4 2 11 11 N 1.46933 * 108.77787 * 305.36669 * 10 5 4 12 12 C 1.34769 * 120.63018 * 233.58618 * 11 10 5 13 13 O 1.21351 * 119.99798 * 175.27935 * 12 11 10 14 14 C 1.49453 * 120.00177 * 355.28063 * 12 11 10 15 15 O 1.21353 * 120.00158 * 273.96124 * 14 12 11 16 16 N 1.34781 * 119.99828 * 93.96671 * 14 12 11 17 17 C 1.46495 * 119.99905 * 184.97530 * 16 14 12 18 18 C 1.53002 * 109.47341 * 175.17081 * 17 16 14 19 19 C 1.50705 * 115.54469 * 39.73752 * 18 17 16 20 20 H 1.07993 * 119.99707 * 272.25843 * 19 18 17 21 21 C 1.37877 * 119.99822 * 92.26078 * 19 18 17 22 22 N 1.31511 * 119.99621 * 182.80883 * 21 19 18 23 23 Si 1.86795 * 120.00232 * 2.80857 * 21 19 18 24 24 H 1.48506 * 109.47252 * 93.70576 * 23 21 19 25 25 H 1.48499 * 109.47433 * 213.70614 * 23 21 19 26 26 H 1.48501 * 109.47300 * 333.70821 * 23 21 19 27 27 C 1.52999 * 117.50134 * 254.03074 * 18 17 16 28 28 C 1.52996 * 117.50149 * 185.40344 * 18 17 16 29 29 C 1.46921 * 118.73441 * 53.60552 * 11 10 5 30 30 H 1.08997 * 109.47732 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46791 * 300.06581 * 1 2 3 32 32 H 1.08999 * 109.47085 * 60.06477 * 1 2 3 33 33 H 1.09000 * 109.46067 * 298.56423 * 4 2 1 34 34 H 1.08997 * 109.46345 * 178.60428 * 4 2 1 35 35 H 0.96708 * 116.99469 * 179.97438 * 9 7 5 36 36 H 1.08997 * 109.58510 * 65.15432 * 10 5 4 37 37 H 1.09001 * 109.58669 * 185.43919 * 10 5 4 38 38 H 0.96995 * 119.99880 * 4.96877 * 16 14 12 39 39 H 1.09001 * 109.47229 * 295.17813 * 17 16 14 40 40 H 1.09005 * 109.47126 * 55.17062 * 17 16 14 41 41 H 0.97004 * 119.99818 * 179.97438 * 22 21 19 42 42 H 1.09002 * 117.49974 * 359.97438 * 27 18 17 43 43 H 1.08994 * 117.49580 * 145.02203 * 27 18 17 44 44 H 1.08997 * 117.49950 * 214.98194 * 28 18 17 45 45 H 1.09004 * 117.49857 * 0.02562 * 28 18 17 46 46 H 1.08996 * 109.59006 * 66.18284 * 29 11 10 47 47 H 1.09004 * 109.58435 * 186.45979 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 1.5030 -2.1561 1.2655 6 1 0.4132 -2.1358 1.2536 7 6 1.9794 -2.8579 2.5111 8 8 2.6766 -2.2723 3.3053 9 8 1.6282 -4.1333 2.7388 10 6 2.0139 -2.9041 0.0301 11 7 1.6514 -2.1379 -1.1701 12 6 0.9747 -2.7215 -2.1789 13 8 0.6064 -2.0583 -3.1261 14 6 0.6777 -4.1855 -2.1311 15 8 1.4953 -4.9841 -2.5389 16 7 -0.4983 -4.6187 -1.6351 17 6 -0.7462 -6.0549 -1.4869 18 6 -2.0942 -6.2712 -0.7961 19 6 -3.1996 -5.3398 -1.2223 20 1 -3.3250 -4.3884 -0.7270 21 6 -4.0509 -5.7024 -2.2444 22 7 -4.9806 -4.8670 -2.6535 23 14 -3.8837 -7.3803 -3.0483 24 1 -4.8003 -8.3412 -2.3836 25 1 -4.2340 -7.2767 -4.4877 26 1 -2.4838 -7.8569 -2.9127 27 6 -2.0746 -6.7231 0.6655 28 6 -2.4802 -7.7067 -0.4340 29 6 2.0412 -0.7236 -1.2497 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6988 -0.1964 2.1389 34 1 3.1305 -0.7448 1.2351 35 1 1.9583 -4.5412 3.5511 36 1 3.0978 -3.0044 0.0861 37 1 1.5571 -3.8928 -0.0133 38 1 -1.1803 -3.9795 -1.3762 39 1 -0.7624 -6.5242 -2.4705 40 1 0.0461 -6.5002 -0.8850 41 1 -5.5792 -5.1220 -3.3729 42 1 -1.1013 -6.8667 1.1349 43 1 -2.8613 -6.3466 1.3192 44 1 -3.5337 -7.9774 -0.5036 45 1 -1.7736 -8.4971 -0.6875 46 1 3.1274 -0.6460 -1.2982 47 1 1.6028 -0.2733 -2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422706927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:05 Heat of formation + Delta-G solvation = -136.244115 kcal Electronic energy + Delta-G solvation = -31281.796985 eV Core-core repulsion = 27044.405122 eV Total energy + Delta-G solvation = -4237.391863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24213 -40.29314 -38.86634 -37.67772 -37.03849 -36.35638 -33.86159 -33.67316 -32.47351 -32.22690 -27.97157 -27.04368 -26.12836 -25.40181 -25.02510 -23.09237 -21.85192 -21.51807 -19.95859 -19.45696 -18.86868 -18.30953 -17.96404 -17.07267 -16.68927 -16.58545 -15.96548 -15.83429 -15.18709 -14.97989 -14.71507 -14.59523 -14.37367 -14.17168 -14.02160 -13.82596 -13.38486 -13.23325 -13.10483 -12.89000 -12.51453 -12.39186 -12.34722 -11.97336 -11.77619 -11.58924 -11.37138 -11.25584 -11.21920 -11.02737 -10.93702 -10.85335 -10.72377 -10.51805 -10.29820 -9.65219 -9.38341 -9.19065 -8.96697 -8.85753 -8.64277 -8.41281 -6.24704 -4.31758 1.85253 2.25297 2.32720 2.72975 2.85444 3.22848 3.35588 3.38797 3.63147 4.15207 4.32743 4.32926 4.47328 4.57836 4.69260 4.78910 4.87762 4.96502 5.07458 5.09488 5.11992 5.33714 5.38245 5.45075 5.52322 5.59046 5.61629 5.78372 5.82902 5.87738 5.89625 5.98414 6.11223 6.12727 6.20983 6.25933 6.35932 6.37373 6.61863 6.73030 6.92122 6.96985 6.99996 7.58322 7.62365 7.81566 7.85829 8.28466 8.38505 8.73522 9.38087 10.85706 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.004078 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.549210 B = 6863.744385 C = 7711.518526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.099 4.099 5 C -0.100 4.100 6 H 0.124 0.876 7 C 0.489 3.511 8 O -0.514 6.514 9 O -0.508 6.508 10 C 0.120 3.880 11 N -0.597 5.597 12 C 0.521 3.479 13 O -0.504 6.504 14 C 0.505 3.495 15 O -0.532 6.532 16 N -0.674 5.674 17 C 0.153 3.847 18 C -0.016 4.016 19 C -0.501 4.501 20 H 0.080 0.920 21 C 0.084 3.916 22 N -0.888 5.888 23 Si 0.882 3.118 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.255 1.255 27 C -0.177 4.177 28 C -0.193 4.193 29 C 0.110 3.890 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.267 0.733 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 6.316 9.966 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.137 4.137 5 C -0.120 4.120 6 H 0.142 0.858 7 C 0.331 3.669 8 O -0.402 6.402 9 O -0.319 6.319 10 C -0.004 4.004 11 N -0.333 5.333 12 C 0.304 3.696 13 O -0.377 6.377 14 C 0.284 3.716 15 O -0.409 6.409 16 N -0.326 5.326 17 C 0.029 3.971 18 C -0.017 4.017 19 C -0.538 4.538 20 H 0.098 0.902 21 C -0.121 4.121 22 N -0.523 5.523 23 Si 0.710 3.290 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.179 1.179 27 C -0.215 4.215 28 C -0.231 4.231 29 C -0.012 4.012 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.271 0.729 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.918 6.471 8.864 17.724 hybrid contribution -0.253 -0.993 0.213 1.047 sum 13.664 5.477 9.077 17.295 Atomic orbital electron populations 1.21906 0.94030 1.02718 1.02336 1.21532 0.97244 0.99732 0.93806 0.88938 1.21497 1.01416 0.91954 0.98791 1.21523 1.04530 0.95921 0.90044 0.85822 1.23186 0.76537 0.79818 0.87389 1.90721 1.35618 1.66462 1.47383 1.84598 1.71830 1.27712 1.47769 1.21610 1.01232 0.95251 0.82298 1.47959 1.56452 1.11596 1.17276 1.20579 0.77806 0.88416 0.82791 1.90798 1.50594 1.63284 1.33000 1.19969 0.83796 0.88193 0.79618 1.90775 1.48357 1.54381 1.47405 1.46068 1.15473 1.10338 1.60750 1.21141 0.96526 0.79086 1.00316 1.19582 0.94115 0.94219 0.93767 1.20112 1.11183 1.03770 1.18721 0.90212 1.25002 0.94329 0.97081 0.95648 1.69878 1.18827 1.35690 1.27913 0.86837 0.79688 0.84491 0.78012 1.20605 1.22220 1.17916 1.22957 1.00871 1.04857 0.92768 1.22917 1.01016 0.93490 1.05677 1.21819 0.99928 0.79752 0.99678 0.92132 0.92266 0.91916 0.90201 0.90561 0.72935 0.90113 0.88156 0.74524 0.91924 0.92611 0.92304 0.90695 0.89427 0.89294 0.90561 0.90836 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.70 37.16 0.32 -1.10 16 2 C -0.10 -0.82 3.21 -90.50 -0.29 -1.11 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.10 -0.80 4.01 -26.69 -0.11 -0.91 16 5 C -0.10 -0.92 2.44 -91.65 -0.22 -1.15 16 6 H 0.12 1.16 6.33 -51.93 -0.33 0.83 16 7 C 0.49 4.82 7.63 36.01 0.27 5.09 16 8 O -0.51 -6.20 16.74 -18.75 -0.31 -6.51 16 9 O -0.51 -4.32 13.35 -39.25 -0.52 -4.84 16 10 C 0.12 1.25 5.53 -3.71 -0.02 1.23 16 11 N -0.60 -7.28 2.41 -173.28 -0.42 -7.69 16 12 C 0.52 8.61 7.54 -11.59 -0.09 8.52 16 13 O -0.50 -9.74 16.51 5.50 0.09 -9.65 16 14 C 0.50 9.28 5.62 -11.58 -0.07 9.21 16 15 O -0.53 -11.00 17.11 5.49 0.09 -10.91 16 16 N -0.67 -12.51 5.38 -60.73 -0.33 -12.83 16 17 C 0.15 2.97 5.73 -4.04 -0.02 2.95 16 18 C -0.02 -0.32 1.24 -155.66 -0.19 -0.51 16 19 C -0.50 -12.38 8.05 -34.44 -0.28 -12.66 16 20 H 0.08 2.11 7.99 -52.49 -0.42 1.69 16 21 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 22 N -0.89 -25.39 13.96 55.43 0.77 -24.62 16 23 Si 0.88 20.79 24.91 -169.99 -4.23 16.55 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.26 -5.70 5.64 56.52 0.32 -5.39 16 27 C -0.18 -3.16 9.88 -26.73 -0.26 -3.42 16 28 C -0.19 -3.74 7.07 -26.73 -0.19 -3.93 16 29 C 0.11 1.07 5.84 -3.71 -0.02 1.05 16 30 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.41 1.79 9.10 45.56 0.41 2.21 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.19 6.38 -51.93 -0.33 0.86 16 38 H 0.42 7.80 7.30 -40.82 -0.30 7.50 16 39 H 0.06 1.33 7.44 -51.93 -0.39 0.95 16 40 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.09 1.83 6.42 -51.93 -0.33 1.49 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -32.75 379.63 -6.60 -39.35 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.21 Total: 10.05 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.26 Total: 5.40 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.03 Total: -45.15 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.65 Total: -31.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.23 Total: 16.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.75 -6.60 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.893 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds