Wall clock time and date at job start Tue Mar 31 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50063 * 2 1 4 4 C 1.53045 * 109.49872 * 120.09553 * 2 1 3 5 5 C 1.53041 * 109.53826 * 58.58400 * 4 2 1 6 6 H 1.09005 * 109.49783 * 301.41375 * 5 4 2 7 7 C 1.50700 * 109.52662 * 181.33322 * 5 4 2 8 8 O 1.20823 * 119.99702 * 0.08131 * 7 5 4 9 9 O 1.34227 * 119.99795 * 180.02562 * 7 5 4 10 10 C 1.53190 * 109.31303 * 61.36461 * 5 4 2 11 11 N 1.46933 * 108.77787 * 305.36669 * 10 5 4 12 12 C 1.34769 * 120.63018 * 233.58618 * 11 10 5 13 13 O 1.21351 * 119.99798 * 175.27935 * 12 11 10 14 14 C 1.49453 * 120.00177 * 355.28063 * 12 11 10 15 15 O 1.21353 * 120.00158 * 273.96124 * 14 12 11 16 16 N 1.34781 * 119.99828 * 93.96671 * 14 12 11 17 17 C 1.46495 * 119.99905 * 184.97530 * 16 14 12 18 18 C 1.53002 * 109.47341 * 175.17081 * 17 16 14 19 19 C 1.50705 * 115.54469 * 39.73752 * 18 17 16 20 20 H 1.07993 * 119.99707 * 272.25843 * 19 18 17 21 21 C 1.37877 * 119.99822 * 92.26078 * 19 18 17 22 22 N 1.31511 * 119.99621 * 182.80883 * 21 19 18 23 23 Si 1.86795 * 120.00232 * 2.80857 * 21 19 18 24 24 H 1.48506 * 109.47252 * 93.70576 * 23 21 19 25 25 H 1.48499 * 109.47433 * 213.70614 * 23 21 19 26 26 H 1.48501 * 109.47300 * 333.70821 * 23 21 19 27 27 C 1.52999 * 117.50134 * 254.03074 * 18 17 16 28 28 C 1.52996 * 117.50149 * 185.40344 * 18 17 16 29 29 C 1.46921 * 118.73441 * 53.60552 * 11 10 5 30 30 H 1.08997 * 109.47732 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46791 * 300.06581 * 1 2 3 32 32 H 1.08999 * 109.47085 * 60.06477 * 1 2 3 33 33 H 1.09000 * 109.46067 * 298.56423 * 4 2 1 34 34 H 1.08997 * 109.46345 * 178.60428 * 4 2 1 35 35 H 0.96708 * 116.99469 * 179.97438 * 9 7 5 36 36 H 1.08997 * 109.58510 * 65.15432 * 10 5 4 37 37 H 1.09001 * 109.58669 * 185.43919 * 10 5 4 38 38 H 0.96995 * 119.99880 * 4.96877 * 16 14 12 39 39 H 1.09001 * 109.47229 * 295.17813 * 17 16 14 40 40 H 1.09005 * 109.47126 * 55.17062 * 17 16 14 41 41 H 0.97004 * 119.99818 * 179.97438 * 22 21 19 42 42 H 1.09002 * 117.49974 * 359.97438 * 27 18 17 43 43 H 1.08994 * 117.49580 * 145.02203 * 27 18 17 44 44 H 1.08997 * 117.49950 * 214.98194 * 28 18 17 45 45 H 1.09004 * 117.49857 * 0.02562 * 28 18 17 46 46 H 1.08996 * 109.59006 * 66.18284 * 29 11 10 47 47 H 1.09004 * 109.58435 * 186.45979 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 1.5030 -2.1561 1.2655 6 1 0.4132 -2.1358 1.2536 7 6 1.9794 -2.8579 2.5111 8 8 2.6766 -2.2723 3.3053 9 8 1.6282 -4.1333 2.7388 10 6 2.0139 -2.9041 0.0301 11 7 1.6514 -2.1379 -1.1701 12 6 0.9747 -2.7215 -2.1789 13 8 0.6064 -2.0583 -3.1261 14 6 0.6777 -4.1855 -2.1311 15 8 1.4953 -4.9841 -2.5389 16 7 -0.4983 -4.6187 -1.6351 17 6 -0.7462 -6.0549 -1.4869 18 6 -2.0942 -6.2712 -0.7961 19 6 -3.1996 -5.3398 -1.2223 20 1 -3.3250 -4.3884 -0.7270 21 6 -4.0509 -5.7024 -2.2444 22 7 -4.9806 -4.8670 -2.6535 23 14 -3.8837 -7.3803 -3.0483 24 1 -4.8003 -8.3412 -2.3836 25 1 -4.2340 -7.2767 -4.4877 26 1 -2.4838 -7.8569 -2.9127 27 6 -2.0746 -6.7231 0.6655 28 6 -2.4802 -7.7067 -0.4340 29 6 2.0412 -0.7236 -1.2497 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6988 -0.1964 2.1389 34 1 3.1305 -0.7448 1.2351 35 1 1.9583 -4.5412 3.5511 36 1 3.0978 -3.0044 0.0861 37 1 1.5571 -3.8928 -0.0133 38 1 -1.1803 -3.9795 -1.3762 39 1 -0.7624 -6.5242 -2.4705 40 1 0.0461 -6.5002 -0.8850 41 1 -5.5792 -5.1220 -3.3729 42 1 -1.1013 -6.8667 1.1349 43 1 -2.8613 -6.3466 1.3192 44 1 -3.5337 -7.9774 -0.5036 45 1 -1.7736 -8.4971 -0.6875 46 1 3.1274 -0.6460 -1.2982 47 1 1.6028 -0.2733 -2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422706927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:04 Heat of formation + Delta-G solvation = -160.167052 kcal Electronic energy + Delta-G solvation = -31282.834362 eV Core-core repulsion = 27044.405122 eV Total energy + Delta-G solvation = -4238.429239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26183 -41.32172 -40.10905 -38.90138 -38.53905 -37.11029 -35.22934 -34.78325 -34.22685 -33.28514 -29.26402 -28.08399 -27.57864 -26.81971 -25.85884 -24.29363 -23.35521 -22.32957 -21.39459 -20.83422 -19.82718 -19.26574 -19.01500 -18.33960 -18.17112 -17.57402 -17.33545 -16.96503 -16.77933 -16.13212 -15.94707 -15.88890 -15.34947 -15.29103 -14.98953 -14.78499 -14.74537 -14.56051 -14.39221 -14.22003 -14.01487 -13.95600 -13.19858 -13.09936 -12.86190 -12.73943 -12.67291 -12.51159 -12.32422 -12.12950 -12.01108 -11.97023 -11.80582 -11.59923 -11.52192 -11.46478 -11.01823 -10.77870 -10.62587 -10.37544 -9.98237 -9.96662 -8.29873 -6.37185 0.89689 1.01436 1.17338 1.33797 1.42162 1.46972 1.51118 2.02763 2.36942 2.44312 3.04913 3.17290 3.38658 3.43283 3.58961 3.80506 3.86352 4.03117 4.03219 4.22079 4.26859 4.37789 4.41789 4.43509 4.56686 4.59235 4.66136 4.67477 4.77065 4.79539 4.90888 4.93923 5.02820 5.09830 5.10437 5.19946 5.20367 5.28760 5.36790 5.44250 5.53778 5.61424 5.70898 5.85153 6.27380 6.34103 6.59247 6.72993 6.86029 6.99182 7.34896 8.83769 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.004078 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.549210 B = 6863.744385 C = 7711.518526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 H 0.121 0.879 4 C -0.094 4.094 5 C -0.097 4.097 6 H 0.120 0.880 7 C 0.497 3.503 8 O -0.536 6.536 9 O -0.510 6.510 10 C 0.117 3.883 11 N -0.581 5.581 12 C 0.521 3.479 13 O -0.543 6.543 14 C 0.507 3.493 15 O -0.555 6.555 16 N -0.674 5.674 17 C 0.159 3.841 18 C -0.043 4.043 19 C -0.482 4.482 20 H 0.050 0.950 21 C 0.029 3.971 22 N -0.939 5.939 23 Si 0.928 3.072 24 H -0.271 1.271 25 H -0.311 1.311 26 H -0.233 1.233 27 C -0.149 4.149 28 C -0.195 4.195 29 C 0.103 3.897 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.429 0.571 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.263 0.737 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.049 5.708 11.967 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.111 4.111 3 H 0.139 0.861 4 C -0.131 4.131 5 C -0.117 4.117 6 H 0.138 0.862 7 C 0.340 3.660 8 O -0.426 6.426 9 O -0.324 6.324 10 C -0.006 4.006 11 N -0.315 5.315 12 C 0.304 3.696 13 O -0.419 6.419 14 C 0.288 3.712 15 O -0.434 6.434 16 N -0.326 5.326 17 C 0.035 3.965 18 C -0.044 4.044 19 C -0.520 4.520 20 H 0.068 0.932 21 C -0.170 4.170 22 N -0.578 5.578 23 Si 0.755 3.245 24 H -0.197 1.197 25 H -0.239 1.239 26 H -0.156 1.156 27 C -0.186 4.186 28 C -0.232 4.232 29 C -0.017 4.017 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.292 0.708 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.251 0.749 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.324 5.840 10.942 20.501 hybrid contribution -0.964 -0.764 -0.284 1.262 sum 15.360 5.077 10.657 19.372 Atomic orbital electron populations 1.21919 0.95370 1.01449 1.02440 1.21504 0.95931 1.00952 0.92733 0.86148 1.21485 1.01903 0.90951 0.98765 1.21491 1.04348 0.96585 0.89253 0.86224 1.23114 0.75871 0.79991 0.87045 1.90720 1.36696 1.67024 1.48152 1.84561 1.71674 1.27106 1.49024 1.21756 1.02347 0.94608 0.81890 1.47995 1.54321 1.12687 1.16457 1.20255 0.78473 0.87473 0.83439 1.90784 1.52732 1.63617 1.34756 1.20283 0.83210 0.89056 0.78668 1.90749 1.48940 1.55389 1.48358 1.46062 1.15528 1.10161 1.60805 1.21058 0.96485 0.79429 0.99487 1.19471 0.93354 0.94798 0.96746 1.20300 1.11416 1.03215 1.17064 0.93199 1.25727 0.94490 0.99997 0.96762 1.70014 1.20713 1.37733 1.29343 0.86088 0.80902 0.81361 0.76188 1.19655 1.23920 1.15565 1.22988 1.02400 1.02171 0.90994 1.22991 1.00959 0.93185 1.06070 1.22121 1.01494 0.77986 1.00147 0.94103 0.90961 0.93049 0.89719 0.89597 0.70844 0.88120 0.89403 0.74851 0.93939 0.89972 0.92754 0.87190 0.89882 0.90699 0.88008 0.88126 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.70 71.98 0.63 -2.12 16 2 C -0.09 -1.24 3.21 -10.72 -0.03 -1.28 16 3 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.09 -1.24 4.01 30.62 0.12 -1.12 16 5 C -0.10 -1.58 2.44 -11.46 -0.03 -1.61 16 6 H 0.12 2.09 6.33 -2.38 -0.02 2.08 16 7 C 0.50 8.58 7.63 71.24 0.54 9.12 16 8 O -0.54 -11.63 16.74 21.97 0.37 -11.26 16 9 O -0.51 -7.30 13.35 -51.39 -0.69 -7.99 16 10 C 0.12 2.22 5.53 86.36 0.48 2.69 16 11 N -0.58 -13.52 2.41 -820.49 -1.98 -15.50 16 12 C 0.52 17.26 7.54 87.27 0.66 17.91 16 13 O -0.54 -21.49 16.51 -3.25 -0.05 -21.55 16 14 C 0.51 18.56 5.62 87.27 0.49 19.05 16 15 O -0.56 -22.66 17.11 -3.26 -0.06 -22.71 16 16 N -0.67 -24.89 5.38 -464.40 -2.50 -27.39 16 17 C 0.16 5.92 5.73 86.38 0.50 6.42 16 18 C -0.04 -1.68 1.24 -52.93 -0.07 -1.75 16 19 C -0.48 -24.14 8.05 25.60 0.21 -23.93 16 20 H 0.05 2.74 7.99 -2.91 -0.02 2.71 16 21 C 0.03 1.59 5.47 84.66 0.46 2.05 16 22 N -0.94 -55.84 13.96 21.45 0.30 -55.54 16 23 Si 0.93 42.91 24.91 68.60 1.71 44.62 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 26 H -0.23 -9.81 5.64 99.48 0.56 -9.25 16 27 C -0.15 -4.80 9.88 30.60 0.30 -4.50 16 28 C -0.19 -6.93 7.07 30.59 0.22 -6.72 16 29 C 0.10 1.82 5.84 86.36 0.50 2.32 16 30 H 0.04 0.88 5.97 -2.39 -0.01 0.86 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.12 8.07 -2.39 -0.02 1.10 16 34 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 35 H 0.43 2.53 9.10 -74.05 -0.67 1.86 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.93 6.38 -2.39 -0.02 1.92 16 38 H 0.41 15.83 7.30 -92.71 -0.68 15.15 16 39 H 0.04 1.75 7.44 -2.39 -0.02 1.74 16 40 H 0.08 2.63 7.95 -2.38 -0.02 2.62 16 41 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 42 H 0.11 2.83 8.08 -2.39 -0.02 2.81 16 43 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.07 2.91 6.42 -2.39 -0.02 2.89 16 45 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.85 7.00 -2.39 -0.02 1.83 16 Total: -1.00 -72.67 379.63 1.61 -71.06 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.48 Total: 29.70 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 4.98 Total: 16.55 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.18 Total: -98.43 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -0.43 Total: -63.51 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.71 Total: 44.62 kcal Total: -72.67 1.61 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.106 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds